Wall clock time and date at job start Tue Mar 31 2020 14:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47368 * 2 1 4 4 C 1.53001 * 109.47041 * 240.00037 * 2 1 3 5 5 C 1.53001 * 109.47102 * 120.00568 * 2 1 3 6 6 N 1.46491 * 109.47343 * 59.99633 * 5 2 1 7 7 C 1.46503 * 120.00413 * 270.00426 * 6 5 2 8 8 C 1.50703 * 109.46824 * 269.99814 * 7 6 5 9 9 H 1.07998 * 119.99843 * 359.97438 * 8 7 6 10 10 C 1.37879 * 119.99783 * 179.97438 * 8 7 6 11 11 N 1.31507 * 119.99911 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99697 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47240 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.46770 * 120.00020 * 12 10 8 15 15 H 1.48499 * 109.46987 * 239.99646 * 12 10 8 16 16 C 1.34783 * 120.00138 * 90.00093 * 6 5 2 17 17 S 1.71198 * 120.00090 * 179.97438 * 16 6 5 18 18 N 1.34779 * 119.99768 * 0.02562 * 16 6 5 19 19 C 1.46499 * 119.99872 * 180.02562 * 18 16 6 20 20 C 1.50701 * 109.46992 * 179.97438 * 19 18 16 21 21 C 1.33393 * 125.20065 * 89.99565 * 20 19 18 22 22 C 1.38425 * 114.92007 * 179.97438 * 21 20 19 23 23 C 1.33389 * 114.92135 * 0.02562 * 22 21 20 24 24 S 1.75882 * 125.20483 * 269.69419 * 20 19 18 25 25 H 1.08999 * 109.46490 * 300.00162 * 1 2 3 26 26 H 1.08999 * 109.46834 * 59.99435 * 1 2 3 27 27 H 1.08991 * 109.47010 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46948 * 179.97438 * 3 2 1 29 29 H 1.08991 * 109.47297 * 300.00056 * 3 2 1 30 30 H 1.09006 * 109.46810 * 60.00438 * 3 2 1 31 31 H 1.08997 * 109.47712 * 300.00415 * 4 2 1 32 32 H 1.08999 * 109.46875 * 60.00554 * 4 2 1 33 33 H 1.09004 * 109.47184 * 179.97438 * 4 2 1 34 34 H 1.09007 * 109.46720 * 299.99363 * 5 2 1 35 35 H 1.09004 * 109.46913 * 179.97438 * 5 2 1 36 36 H 1.09003 * 109.46641 * 29.99581 * 7 6 5 37 37 H 1.08997 * 109.47376 * 149.99912 * 7 6 5 38 38 H 0.97005 * 119.99711 * 179.97438 * 11 10 8 39 39 H 0.97000 * 119.99708 * 359.97438 * 18 16 6 40 40 H 1.09002 * 109.47391 * 59.99686 * 19 18 16 41 41 H 1.09001 * 109.46813 * 299.99742 * 19 18 16 42 42 H 1.08005 * 122.54147 * 359.96383 * 21 20 19 43 43 H 1.07995 * 122.53675 * 180.02562 * 22 21 20 44 44 H 1.07999 * 125.20519 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0400 -0.7214 1.2492 6 7 1.5517 -2.1025 1.2491 7 6 0.2715 -2.4269 1.8834 8 6 0.5024 -2.7751 3.3314 9 1 1.5027 -2.7569 3.7383 10 6 -0.5633 -3.1168 4.1367 11 7 -1.7814 -3.1384 3.6413 12 14 -0.2772 -3.5476 5.9317 13 1 1.1719 -3.4469 6.2400 14 1 -1.0330 -2.6037 6.7938 15 1 -0.7434 -4.9340 6.1883 16 6 2.2800 -3.0749 0.6655 17 16 1.7096 -4.6890 0.6660 18 7 3.4579 -2.7765 0.0823 19 6 4.2493 -3.8333 -0.5526 20 6 5.5111 -3.2407 -1.1252 21 6 6.6688 -3.1204 -0.4735 22 6 7.6928 -2.5440 -1.2052 23 6 7.3666 -2.1958 -2.4508 24 16 5.6846 -2.6087 -2.7574 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9563 -0.8899 30 1 1.6768 1.9563 0.8901 31 1 1.6767 -1.7489 -1.2494 32 1 1.6767 -0.2073 -2.1392 33 1 3.1300 -0.7209 -1.2495 34 1 1.6767 -0.2075 2.1392 35 1 3.1301 -0.7218 1.2489 36 1 -0.3945 -1.5665 1.8183 37 1 -0.1817 -3.2768 1.3732 38 1 -2.5311 -3.3791 4.2077 39 1 3.7812 -1.8620 0.0824 40 1 3.6680 -4.2917 -1.3526 41 1 4.5067 -4.5897 0.1889 42 1 6.7973 -3.4478 0.5476 43 1 8.6809 -2.3882 -0.7983 44 1 8.0346 -1.7355 -3.1637 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729645849.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:25 Heat of formation + Delta-G solvation = 50.711830 kcal Electronic energy + Delta-G solvation = -24065.963242 eV Core-core repulsion = 20850.410280 eV Total energy + Delta-G solvation = -3215.552962 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 326.118 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.79771 -38.21220 -36.33683 -34.80505 -32.54576 -30.68760 -28.00454 -27.35193 -27.10753 -26.77763 -25.61264 -23.38515 -22.77054 -21.27826 -19.50654 -18.85569 -18.00426 -16.96610 -16.66247 -16.44478 -15.64804 -15.14246 -14.75226 -14.44130 -14.23979 -14.19140 -13.83697 -13.29691 -13.05073 -12.94876 -12.74356 -12.61995 -12.32839 -12.20612 -12.13441 -11.71570 -11.55178 -11.42270 -11.33186 -10.99387 -10.89661 -10.74738 -10.66064 -10.56823 -10.47314 -10.15406 -10.05754 -9.53835 -9.06152 -8.71805 -8.40040 -8.13580 -6.89505 -6.38023 -6.01118 -4.03779 0.65536 1.37146 1.75820 2.25031 2.41452 2.83823 3.33153 3.41986 3.43683 3.52154 3.90519 4.47591 4.49474 4.76165 4.77380 4.80080 4.96951 5.12687 5.28892 5.30851 5.35231 5.48648 5.49873 5.54521 5.72879 5.75759 5.80043 5.88106 5.89547 5.96804 6.01551 6.06638 6.09943 6.22015 6.22789 6.36833 6.45720 6.58856 6.71872 7.24215 7.53375 7.63256 7.95064 8.05181 8.21244 8.94794 9.58508 11.07346 Molecular weight = 326.12amu Principal moments of inertia in cm(-1) A = 0.013914 B = 0.004054 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.909028 B = 6904.802433 C = 7900.195950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 C -0.137 4.137 4 C -0.145 4.145 5 C 0.103 3.897 6 N -0.534 5.534 7 C 0.235 3.765 8 C -0.516 4.516 9 H 0.055 0.945 10 C 0.067 3.933 11 N -0.891 5.891 12 Si 0.897 3.103 13 H -0.275 1.275 14 H -0.286 1.286 15 H -0.282 1.282 16 C 0.565 3.435 17 S -0.661 6.661 18 N -0.704 5.704 19 C 0.204 3.796 20 C -0.198 4.198 21 C -0.118 4.118 22 C -0.138 4.138 23 C -0.213 4.213 24 S 0.115 5.885 25 H 0.059 0.941 26 H 0.049 0.951 27 H 0.070 0.930 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.048 0.952 34 H 0.097 0.903 35 H 0.062 0.938 36 H 0.044 0.956 37 H 0.077 0.923 38 H 0.262 0.738 39 H 0.392 0.608 40 H 0.091 0.909 41 H 0.100 0.900 42 H 0.143 0.857 43 H 0.140 0.860 44 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.236 9.269 -12.520 22.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.087 4.087 3 C -0.195 4.195 4 C -0.203 4.203 5 C -0.024 4.024 6 N -0.238 5.238 7 C 0.117 3.883 8 C -0.555 4.555 9 H 0.073 0.927 10 C -0.135 4.135 11 N -0.529 5.529 12 Si 0.725 3.275 13 H -0.200 1.200 14 H -0.212 1.212 15 H -0.208 1.208 16 C 0.206 3.794 17 S -0.532 6.532 18 N -0.341 5.341 19 C 0.078 3.922 20 C -0.316 4.316 21 C -0.149 4.149 22 C -0.168 4.168 23 C -0.349 4.349 24 S 0.378 5.622 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.089 0.911 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.115 0.885 35 H 0.080 0.920 36 H 0.062 0.938 37 H 0.094 0.906 38 H 0.072 0.928 39 H 0.231 0.769 40 H 0.109 0.891 41 H 0.118 0.882 42 H 0.161 0.839 43 H 0.158 0.842 44 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 14.661 8.348 -13.693 21.728 hybrid contribution 1.674 0.922 2.268 2.965 sum 16.334 9.271 -11.425 21.984 Atomic orbital electron populations 1.21975 0.93286 1.03395 1.01393 1.21012 0.97424 0.95310 0.94993 1.21809 1.00519 0.95021 1.02171 1.22057 0.99834 1.01253 0.97117 1.21876 0.98001 0.83335 0.99195 1.47745 1.22396 1.04337 1.49335 1.20050 0.76201 0.98949 0.93127 1.21193 0.93689 1.46955 0.93699 0.92687 1.24802 0.94921 0.95143 0.98638 1.69925 0.98627 1.48369 1.36027 0.86458 0.78098 0.78219 0.84709 1.19978 1.21218 1.20778 1.22043 0.82412 0.94003 0.80977 1.93185 1.79675 1.00030 1.80309 1.45209 1.19323 1.11665 1.57938 1.19798 0.85766 0.88638 0.98020 1.24661 0.99919 1.09171 0.97838 1.20291 0.91869 1.01165 1.01623 1.20195 1.00770 1.01844 0.94006 1.25726 0.99332 1.08683 1.01123 1.84462 1.07148 1.58219 1.12336 0.92149 0.93180 0.91071 0.92918 0.92351 0.92224 0.91918 0.92445 0.93297 0.88463 0.91963 0.93779 0.90568 0.92802 0.76886 0.89083 0.88250 0.83917 0.84214 0.81903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 7.22 37.16 0.27 -1.79 16 2 C -0.09 -1.08 0.84 -154.51 -0.13 -1.21 16 3 C -0.14 -1.37 8.47 37.16 0.31 -1.06 16 4 C -0.15 -1.78 7.00 37.16 0.26 -1.52 16 5 C 0.10 1.54 4.52 -4.05 -0.02 1.52 16 6 N -0.53 -10.35 1.98 -177.08 -0.35 -10.70 16 7 C 0.24 5.73 3.83 -5.19 -0.02 5.72 16 8 C -0.52 -14.10 9.39 -34.44 -0.32 -14.42 16 9 H 0.05 1.53 7.81 -52.49 -0.41 1.12 16 10 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 11 N -0.89 -25.95 13.29 55.43 0.74 -25.22 16 12 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 15 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 16 C 0.57 10.95 6.09 -86.91 -0.53 10.42 16 17 S -0.66 -16.05 27.17 -107.50 -2.92 -18.97 16 18 N -0.70 -10.31 4.23 -63.21 -0.27 -10.57 16 19 C 0.20 2.71 5.62 -5.19 -0.03 2.68 16 20 C -0.20 -2.12 5.88 -36.00 -0.21 -2.33 16 21 C -0.12 -1.14 10.05 -41.21 -0.41 -1.56 16 22 C -0.14 -1.15 10.18 -41.21 -0.42 -1.57 16 23 C -0.21 -1.70 11.23 29.04 0.33 -1.38 16 24 S 0.11 1.07 23.33 -107.50 -2.51 -1.44 16 25 H 0.06 0.89 8.08 -51.93 -0.42 0.47 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 1.24 5.99 -51.93 -0.31 0.93 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.95 6.13 -51.93 -0.32 0.63 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.53 6.66 -51.93 -0.35 0.19 16 34 H 0.10 1.53 8.07 -51.93 -0.42 1.11 16 35 H 0.06 0.81 6.36 -51.93 -0.33 0.48 16 36 H 0.04 1.08 6.05 -51.93 -0.31 0.77 16 37 H 0.08 2.15 6.58 -51.93 -0.34 1.81 16 38 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 39 H 0.39 4.97 4.38 -40.82 -0.18 4.79 16 40 H 0.09 1.30 7.99 -51.93 -0.42 0.89 16 41 H 0.10 1.44 7.99 -51.93 -0.41 1.03 16 42 H 0.14 1.30 8.06 -52.48 -0.42 0.88 16 43 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 44 H 0.16 0.93 8.06 -52.49 -0.42 0.50 16 LS Contribution 371.92 15.07 5.60 5.60 Total: -1.00 -32.13 371.92 -12.49 -44.61 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -6.74 Total: 4.47 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -1.02 Total: -4.71 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: 0.12 Total: -46.49 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 16 Polarization: -14.98 SS G_CDS: -5.43 Total: -20.40 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.13 -12.49 -44.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729645849.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.326 kcal (2) G-P(sol) polarization free energy of solvation -32.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds