Wall clock time and date at job start Tue Mar 31 2020 16:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35829 * 116.99656 * 2 1 4 4 C 1.39893 * 119.62950 * 359.97438 * 3 2 1 5 5 C 1.35920 * 120.88083 * 179.97438 * 4 3 2 6 6 C 1.40747 * 119.89159 * 0.08612 * 5 4 3 7 7 C 1.40168 * 120.96133 * 179.97438 * 6 5 4 8 8 C 1.38871 * 119.45634 * 179.97438 * 7 6 5 9 9 C 1.47007 * 119.77345 * 179.97438 * 8 7 6 10 10 C 1.35048 * 120.00298 * 316.42645 * 9 8 7 11 11 C 1.46120 * 120.00182 * 348.69882 * 10 9 8 12 12 O 1.21640 * 119.99667 * 353.21055 * 11 10 9 13 13 O 1.34923 * 120.00268 * 173.21600 * 11 10 9 14 14 C 1.42895 * 117.00177 * 179.97438 * 13 11 10 15 15 H 1.09004 * 109.47220 * 29.99732 * 14 13 11 16 16 C 1.53000 * 109.46965 * 269.99892 * 14 13 11 17 17 C 1.50705 * 109.47206 * 149.99804 * 14 13 11 18 18 H 1.07992 * 120.00148 * 0.02562 * 17 14 13 19 19 C 1.37877 * 119.99683 * 179.97438 * 17 14 13 20 20 N 1.31516 * 120.00537 * 0.02562 * 19 17 14 21 21 Si 1.86801 * 119.99711 * 180.02562 * 19 17 14 22 22 H 1.48495 * 109.47263 * 90.00007 * 21 19 17 23 23 H 1.48503 * 109.46802 * 210.00190 * 21 19 17 24 24 H 1.48501 * 109.47198 * 329.99776 * 21 19 17 25 25 C 1.40928 * 120.44825 * 0.28130 * 8 7 6 26 26 C 1.35602 * 120.79465 * 359.40465 * 25 8 7 27 27 C 1.40835 * 120.06904 * 0.61066 * 26 25 8 28 28 C 1.37699 * 119.62765 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46954 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47246 * 299.99682 * 1 2 3 31 31 H 1.08997 * 109.47065 * 60.00335 * 1 2 3 32 32 H 1.07997 * 119.56059 * 0.02562 * 4 3 2 33 33 H 1.08003 * 120.05136 * 180.02562 * 5 4 3 34 34 H 1.07994 * 120.27184 * 0.02562 * 7 6 5 35 35 H 1.08006 * 119.99239 * 136.42222 * 9 8 7 36 36 H 1.08006 * 120.00103 * 168.97451 * 10 9 8 37 37 H 1.08994 * 109.47137 * 299.99884 * 16 14 13 38 38 H 1.09000 * 109.47243 * 60.00129 * 16 14 13 39 39 H 1.09006 * 109.46942 * 179.97438 * 16 14 13 40 40 H 0.96999 * 120.00514 * 179.97438 * 20 19 17 41 41 H 1.07997 * 119.60502 * 179.72536 * 25 8 7 42 42 H 1.07999 * 119.96718 * 180.28656 * 26 25 8 43 43 H 1.07994 * 120.19936 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2103 0.0000 4 6 1.2761 2.3785 -0.0005 5 6 1.8665 3.6028 0.0000 6 6 3.2703 3.7046 -0.0008 7 6 3.9026 4.9555 -0.0008 8 6 5.2898 5.0195 -0.0010 9 6 5.9602 6.3278 -0.0016 10 6 5.5140 7.3149 -0.8081 11 6 4.5345 7.0194 -1.8513 12 8 4.2135 5.8677 -2.0755 13 8 3.9862 8.0239 -2.5661 14 6 3.0362 7.6622 -3.5703 15 1 2.5200 6.7502 -3.2706 16 6 3.7614 7.4254 -4.8966 17 6 2.0338 8.7750 -3.7376 18 1 2.1144 9.6691 -3.1374 19 6 1.0144 8.6519 -4.6578 20 7 0.9165 7.5633 -5.3892 21 14 -0.2277 10.0315 -4.8656 22 1 0.2559 10.9815 -5.8994 23 1 -1.5330 9.4629 -5.2878 24 1 -0.3937 10.7468 -3.5749 25 6 6.0592 3.8388 -0.0072 26 6 5.4623 2.6212 -0.0009 27 6 4.0573 2.5241 -0.0010 28 6 3.4212 1.2735 0.0005 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.1985 2.3067 -0.0005 33 1 1.2593 4.4960 0.0000 34 1 3.3158 5.8621 0.0001 35 1 6.8096 6.4995 0.6430 36 1 5.8845 8.3219 -0.6849 37 1 4.2776 8.3373 -5.1964 38 1 4.4864 6.6205 -4.7756 39 1 3.0367 7.1490 -5.6626 40 1 0.1991 7.4765 -6.0362 41 1 7.1372 3.9045 -0.0117 42 1 6.0650 1.7250 -0.0010 43 1 4.0067 0.3660 0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733711232.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:22 Heat of formation + Delta-G solvation = -55.207318 kcal Electronic energy + Delta-G solvation = -26932.710397 eV Core-core repulsion = 23102.074863 eV Total energy + Delta-G solvation = -3830.635535 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.135 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.54827 -39.66795 -38.69524 -36.45687 -35.28401 -33.28291 -33.21538 -32.00741 -29.81934 -29.58762 -28.78081 -26.94057 -25.32678 -24.54607 -23.15973 -22.19652 -21.88939 -20.56673 -19.10560 -18.16341 -17.54856 -16.86341 -16.62940 -16.18638 -15.80907 -15.64078 -15.16899 -14.79118 -14.53426 -14.51508 -14.13895 -13.80418 -13.36226 -13.23293 -13.07608 -12.91643 -12.53769 -12.47874 -12.09999 -11.85753 -11.83803 -11.47260 -11.22685 -11.16126 -11.07531 -10.84202 -10.70771 -10.57068 -10.38636 -10.27432 -10.02897 -9.56423 -9.42342 -8.95906 -8.82134 -8.47411 -8.22331 -7.23653 -6.17223 -4.24371 0.53825 0.94746 1.60092 2.31777 3.12757 3.21409 3.23969 3.29494 3.33186 3.62802 3.83244 4.27542 4.35507 4.66042 4.81484 4.85288 4.91035 5.02261 5.08734 5.15309 5.21413 5.30884 5.31997 5.36600 5.41630 5.56287 5.68244 5.78905 5.90627 6.06377 6.16591 6.27334 6.32295 6.36560 6.43439 6.65129 6.67508 6.78711 6.80744 6.92660 6.95804 7.10324 7.20509 7.36024 7.61735 7.75623 7.96822 8.16778 8.68136 8.93789 9.41553 10.89963 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.010626 B = 0.003788 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2634.525346 B = 7390.159790 C = 9389.867862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.320 6.320 3 C 0.129 3.871 4 C -0.201 4.201 5 C -0.047 4.047 6 C -0.086 4.086 7 C 0.001 3.999 8 C -0.097 4.097 9 C -0.030 4.030 10 C -0.179 4.179 11 C 0.473 3.527 12 O -0.506 6.506 13 O -0.346 6.346 14 C 0.213 3.787 15 H 0.044 0.956 16 C -0.155 4.155 17 C -0.520 4.520 18 H 0.068 0.932 19 C 0.063 3.937 20 N -0.888 5.888 21 Si 0.909 3.091 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.272 1.272 25 C -0.075 4.075 26 C -0.137 4.137 27 C 0.000 4.000 28 C -0.162 4.162 29 H 0.098 0.902 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.128 0.872 33 H 0.132 0.868 34 H 0.121 0.879 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.035 0.965 38 H 0.015 0.985 39 H 0.097 0.903 40 H 0.265 0.735 41 H 0.121 0.879 42 H 0.124 0.876 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.221 -10.466 13.622 17.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.233 6.233 3 C 0.084 3.916 4 C -0.220 4.220 5 C -0.065 4.065 6 C -0.086 4.086 7 C -0.017 4.017 8 C -0.097 4.097 9 C -0.049 4.049 10 C -0.198 4.198 11 C 0.318 3.682 12 O -0.397 6.397 13 O -0.262 6.262 14 C 0.160 3.840 15 H 0.062 0.938 16 C -0.213 4.213 17 C -0.558 4.558 18 H 0.086 0.914 19 C -0.139 4.139 20 N -0.526 5.526 21 Si 0.736 3.264 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.196 1.196 25 C -0.093 4.093 26 C -0.155 4.155 27 C 0.000 4.000 28 C -0.181 4.181 29 H 0.116 0.884 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.146 0.854 33 H 0.150 0.850 34 H 0.139 0.861 35 H 0.157 0.843 36 H 0.159 0.841 37 H 0.054 0.946 38 H 0.034 0.966 39 H 0.116 0.884 40 H 0.075 0.925 41 H 0.139 0.861 42 H 0.142 0.858 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.033 -11.058 13.355 18.055 hybrid contribution -0.994 0.833 -0.563 1.414 sum 4.039 -10.225 12.792 16.867 Atomic orbital electron populations 1.23052 0.78535 1.03734 1.01533 1.86036 1.21318 1.27138 1.88823 1.18960 0.92152 0.83897 0.96553 1.20946 1.00113 0.92314 1.08601 1.20991 0.93594 0.97538 0.94348 1.17909 0.93184 0.93035 1.04508 1.21334 0.93460 0.96145 0.90772 1.18702 0.93062 0.92790 1.05192 1.22374 0.96033 0.91150 0.95318 1.22540 1.00041 1.00525 0.96676 1.21312 0.80477 0.84323 0.82077 1.90903 1.59683 1.21515 1.67638 1.86194 1.54644 1.37886 1.47507 1.20183 0.84391 0.97842 0.81633 0.93799 1.22176 0.99777 0.97984 1.01355 1.21045 1.09842 1.03025 1.21930 0.91412 1.24882 0.97586 0.96329 0.95120 1.69908 1.32607 1.26441 1.23652 0.86312 0.80011 0.81400 0.78642 1.20355 1.21002 1.19631 1.20761 0.99248 0.91539 0.97762 1.20646 0.92831 0.97727 1.04318 1.17754 0.93420 0.91605 0.97210 1.20296 0.91241 0.97346 1.09248 0.88407 0.92681 0.92462 0.85372 0.85043 0.86123 0.84323 0.84129 0.94585 0.96607 0.88450 0.92476 0.86088 0.85823 0.85126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.80 101.05 0.99 1.22 16 2 O -0.32 -4.04 10.48 -19.20 -0.20 -4.24 16 3 C 0.13 1.82 6.67 -39.16 -0.26 1.56 16 4 C -0.20 -2.77 8.94 -39.79 -0.36 -3.13 16 5 C -0.05 -0.71 9.74 -39.47 -0.38 -1.10 16 6 C -0.09 -1.42 5.74 -106.83 -0.61 -2.03 16 7 C 0.00 0.02 6.33 -38.62 -0.24 -0.23 16 8 C -0.10 -1.45 4.55 -105.09 -0.48 -1.93 16 9 C -0.03 -0.39 9.79 -37.16 -0.36 -0.75 16 10 C -0.18 -2.69 10.02 -37.56 -0.38 -3.07 16 11 C 0.47 9.80 6.86 33.89 0.23 10.04 16 12 O -0.51 -11.54 11.42 -19.37 -0.22 -11.76 16 13 O -0.35 -8.31 9.75 -41.11 -0.40 -8.71 16 14 C 0.21 5.75 2.51 -27.88 -0.07 5.68 16 15 H 0.04 1.30 7.11 -51.93 -0.37 0.93 16 16 C -0.16 -4.03 9.31 37.16 0.35 -3.69 16 17 C -0.52 -14.67 8.89 -34.44 -0.31 -14.98 16 18 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 19 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 20 N -0.89 -25.39 11.32 55.43 0.63 -24.77 16 21 Si 0.91 21.09 29.54 -169.99 -5.02 16.06 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 C -0.08 -0.99 9.68 -39.51 -0.38 -1.38 16 26 C -0.14 -1.84 9.72 -39.54 -0.38 -2.23 16 27 C 0.00 0.00 5.75 -106.74 -0.61 -0.61 16 28 C -0.16 -2.31 9.72 -39.00 -0.38 -2.69 16 29 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.42 7.64 -51.93 -0.40 0.02 16 31 H 0.06 0.49 7.64 -51.93 -0.40 0.09 16 32 H 0.13 1.44 6.22 -52.49 -0.33 1.11 16 33 H 0.13 1.87 8.06 -52.48 -0.42 1.44 16 34 H 0.12 2.09 6.99 -52.49 -0.37 1.72 16 35 H 0.14 1.19 8.06 -52.48 -0.42 0.76 16 36 H 0.14 1.73 8.06 -52.48 -0.42 1.31 16 37 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.10 2.70 6.07 -51.93 -0.32 2.38 16 40 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 42 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 43 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 363.68 15.07 5.48 5.48 Total: -1.00 -32.89 363.68 -9.00 -41.88 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -5.52 Total: 3.72 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: -3.74 Total: -17.67 kcal Atomic # 7 Polarization: -25.39 SS G_CDS: 0.63 Total: -24.77 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -0.82 Total: -24.71 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.89 -9.00 -41.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733711232.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.323 kcal (2) G-P(sol) polarization free energy of solvation -32.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds