Wall clock time and date at job start Tue Mar 31 2020 16:33:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.08994 * 109.47172 * 2 1
4 4 C 1.50706 * 109.46676 * 120.00293 * 2 1 3
5 5 O 1.20820 * 119.99985 * 120.27647 * 4 2 1
6 6 O 1.34234 * 120.00044 * 299.99151 * 4 2 1
7 7 C 1.45191 * 117.00100 * 180.02562 * 6 4 2
8 8 C 1.50694 * 109.47412 * 180.02562 * 7 6 4
9 9 C 1.38306 * 119.93446 * 269.73509 * 8 7 6
10 10 C 1.38099 * 120.06736 * 179.72401 * 9 8 7
11 11 C 1.38874 * 119.93457 * 0.56719 * 10 9 8
12 12 O 1.35748 * 120.07384 * 179.68834 * 11 10 9
13 13 C 1.34827 * 117.00490 * 174.48449 * 12 11 10
14 14 H 1.08002 * 119.99701 * 5.05362 * 13 12 11
15 15 C 1.38653 * 120.00267 * 185.05225 * 13 12 11
16 16 N 1.31557 * 120.00212 * 179.97438 * 15 13 12
17 17 Si 1.86798 * 119.99778 * 0.02562 * 15 13 12
18 18 H 1.48501 * 109.47143 * 89.99828 * 17 15 13
19 19 H 1.48505 * 109.47117 * 209.99666 * 17 15 13
20 20 H 1.48493 * 109.47445 * 329.99947 * 17 15 13
21 21 C 1.38886 * 119.85823 * 359.70257 * 11 10 9
22 22 C 1.38095 * 119.93293 * 0.02562 * 21 11 10
23 23 C 1.50703 * 109.46895 * 239.99559 * 2 1 3
24 24 C 1.38230 * 120.00048 * 299.73190 * 23 2 1
25 25 C 1.38236 * 119.99557 * 179.80777 * 24 23 2
26 26 C 1.38239 * 120.00304 * 0.40045 * 25 24 23
27 27 C 1.38243 * 119.99685 * 359.85109 * 26 25 24
28 28 C 1.38230 * 119.99836 * 359.96124 * 27 26 25
29 29 H 1.09010 * 109.47028 * 300.00313 * 1 2 3
30 30 H 1.09001 * 109.47207 * 59.99925 * 1 2 3
31 31 H 1.09002 * 109.47474 * 179.97438 * 1 2 3
32 32 H 1.09001 * 109.47627 * 300.01188 * 7 6 4
33 33 H 1.09005 * 109.47124 * 60.00624 * 7 6 4
34 34 H 1.07998 * 119.96320 * 359.96821 * 9 8 7
35 35 H 1.08009 * 120.03142 * 180.27101 * 10 9 8
36 36 H 0.96992 * 119.99935 * 179.97438 * 16 15 13
37 37 H 1.08001 * 120.03115 * 179.97438 * 21 11 10
38 38 H 1.08000 * 119.96418 * 179.97438 * 22 21 11
39 39 H 1.07998 * 120.00529 * 359.97438 * 24 23 2
40 40 H 1.08001 * 120.00027 * 180.22571 * 25 24 23
41 41 H 1.07992 * 120.00424 * 179.83456 * 26 25 24
42 42 H 1.07996 * 119.99849 * 179.97438 * 27 26 25
43 43 H 1.08004 * 120.00022 * 180.02562 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0323 -0.7105 1.2305
5 8 2.7310 -1.6899 1.1197
6 8 1.7081 -0.2519 2.4497
7 6 2.2275 -0.9858 3.5897
8 6 1.7626 -0.3293 4.8640
9 6 2.5306 0.6600 5.4507
10 6 2.1044 1.2674 6.6154
11 6 0.9091 0.8757 7.2040
12 8 0.4906 1.4664 8.3523
13 6 -0.7303 1.1215 8.8085
14 1 -1.2933 0.3456 8.3110
15 6 -1.2632 1.7628 9.9163
16 7 -2.4548 1.4265 10.3611
17 14 -0.2898 3.1053 10.7763
18 1 -0.6158 4.4201 10.1680
19 1 -0.6427 3.1260 12.2186
20 1 1.1630 2.8370 10.6260
21 6 0.1429 -0.1220 6.6154
22 6 0.5718 -0.7217 5.4477
23 6 2.0323 -0.7105 -1.2304
24 6 1.7029 -2.0355 -1.4463
25 6 2.1604 -2.6860 -2.5770
26 6 2.9541 -2.0139 -3.4876
27 6 3.2878 -0.6903 -3.2691
28 6 2.8271 -0.0387 -2.1404
29 1 -0.3633 0.5139 0.8900
30 1 -0.3634 0.5138 -0.8900
31 1 -0.3634 -1.0277 -0.0005
32 1 1.8642 -2.0129 3.5569
33 1 3.3171 -0.9847 3.5566
34 1 3.4626 0.9606 4.9953
35 1 2.7025 2.0431 7.0707
36 1 -2.8273 1.8749 11.1363
37 1 -0.7869 -0.4292 7.0710
38 1 -0.0234 -1.4979 4.9898
39 1 1.0860 -2.5618 -0.7330
40 1 1.9001 -3.7202 -2.7475
41 1 3.3137 -2.5229 -4.3696
42 1 3.9082 -0.1653 -3.9803
43 1 3.0874 0.9955 -1.9698
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000751995476.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 16:33:25
Heat of formation + Delta-G solvation = -66.598088 kcal
Electronic energy + Delta-G solvation = -25671.706791 eV
Core-core repulsion = 21840.577316 eV
Total energy + Delta-G solvation = -3831.129475 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 326.135 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-40.82930 -39.44602 -39.10552 -37.15346 -36.09979 -34.58217 -32.52869 -31.16716
-30.84072 -30.35273 -29.66048 -26.47312 -25.27661 -24.48640 -22.88454 -22.44932
-22.19042 -20.59722 -20.26471 -18.01374 -17.60630 -17.46453 -17.19825 -16.58066
-16.24880 -15.50149 -15.11282 -14.85412 -14.65091 -14.17808 -14.00604 -13.88049
-13.80171 -13.59356 -13.40278 -13.07670 -12.93760 -12.75850 -12.42486 -12.36772
-12.30085 -12.15147 -11.88002 -11.50236 -11.27728 -11.20888 -11.02606 -10.85836
-10.78598 -10.51000 -10.33545 -10.21798 -9.48197 -9.14154 -9.02268 -8.95324
-8.37595 -7.49667 -6.50325 -4.17111 1.02948 1.17860 1.85018 2.03791
2.17103 2.88998 3.17233 3.21015 3.34907 3.58995 4.16593 4.19898
4.34915 4.51283 4.72559 4.73143 4.79556 4.83214 4.88778 4.94930
5.02107 5.12169 5.15682 5.22432 5.28696 5.43011 5.52659 5.54570
5.58330 5.65961 5.71146 5.78658 5.88143 6.02592 6.19277 6.21546
6.26432 6.32366 6.43945 6.48419 6.67128 6.73792 6.90934 7.10545
7.17728 7.48856 7.70295 7.76342 7.93798 8.84107 9.44525 10.56734
Molecular weight = 326.14amu
Principal moments of inertia in cm(-1)
A = 0.032512 B = 0.001973 C = 0.001956
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 861.024394 B =14188.448762 C =14314.734724
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.044 4.044
3 H 0.115 0.885
4 C 0.461 3.539
5 O -0.506 6.506
6 O -0.348 6.348
7 C 0.128 3.872
8 C -0.195 4.195
9 C -0.050 4.050
10 C -0.196 4.196
11 C 0.169 3.831
12 O -0.211 6.211
13 C -0.392 4.392
14 H 0.108 0.892
15 C 0.065 3.935
16 N -0.874 5.874
17 Si 0.906 3.094
18 H -0.272 1.272
19 H -0.281 1.281
20 H -0.259 1.259
21 C -0.225 4.225
22 C -0.046 4.046
23 C -0.075 4.075
24 C -0.084 4.084
25 C -0.122 4.122
26 C -0.118 4.118
27 C -0.124 4.124
28 C -0.109 4.109
29 H 0.078 0.922
30 H 0.072 0.928
31 H 0.062 0.938
32 H 0.070 0.930
33 H 0.070 0.930
34 H 0.115 0.885
35 H 0.120 0.880
36 H 0.281 0.719
37 H 0.136 0.864
38 H 0.111 0.889
39 H 0.119 0.881
40 H 0.122 0.878
41 H 0.120 0.880
42 H 0.122 0.878
43 H 0.123 0.877
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.446 -3.607 -24.198 25.882
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.063 4.063
3 H 0.133 0.867
4 C 0.304 3.696
5 O -0.394 6.394
6 O -0.264 6.264
7 C 0.055 3.945
8 C -0.196 4.196
9 C -0.069 4.069
10 C -0.215 4.215
11 C 0.116 3.884
12 O -0.116 6.116
13 C -0.467 4.467
14 H 0.125 0.875
15 C -0.140 4.140
16 N -0.511 5.511
17 Si 0.731 3.269
18 H -0.198 1.198
19 H -0.207 1.207
20 H -0.183 1.183
21 C -0.244 4.244
22 C -0.065 4.065
23 C -0.075 4.075
24 C -0.102 4.102
25 C -0.140 4.140
26 C -0.136 4.136
27 C -0.142 4.142
28 C -0.127 4.127
29 H 0.097 0.903
30 H 0.091 0.909
31 H 0.081 0.919
32 H 0.089 0.911
33 H 0.088 0.912
34 H 0.133 0.867
35 H 0.138 0.862
36 H 0.091 0.909
37 H 0.154 0.846
38 H 0.130 0.870
39 H 0.137 0.863
40 H 0.140 0.860
41 H 0.138 0.862
42 H 0.140 0.860
43 H 0.141 0.859
Dipole moment (debyes) X Y Z Total
from point charges 8.573 -3.705 -23.830 25.595
hybrid contribution 0.276 0.329 0.540 0.690
sum 8.849 -3.376 -23.290 25.142
Atomic orbital electron populations
1.21807 0.90931 1.03304 1.03898 1.19968 0.98575 1.00213 0.87565
0.86673 1.23499 0.77789 0.83030 0.85293 1.90667 1.35261 1.26008
1.87442 1.86641 1.69470 1.55842 1.14494 1.21709 0.98074 0.94122
0.80559 1.18931 0.99129 1.04484 0.97067 1.20512 0.98163 0.93954
0.94259 1.20193 0.97571 1.05123 0.98598 1.19182 0.92701 0.91018
0.85510 1.83572 1.34673 1.60148 1.33163 1.20796 0.90454 1.21876
1.13561 0.87455 1.24493 0.95432 0.97982 0.96046 1.69640 1.15136
1.41615 1.24759 0.86169 0.81215 0.81230 0.78240 1.19772 1.20678
1.18315 1.21263 1.03230 1.01040 0.98860 1.20672 0.93937 0.97509
0.94349 1.19344 0.98736 0.94576 0.94892 1.20943 0.98890 0.93752
0.96665 1.21129 0.98381 0.99936 0.94540 1.21170 0.98279 0.94850
0.99345 1.21086 1.00400 0.95032 0.97652 1.21020 0.97201 0.99953
0.94490 0.90289 0.90880 0.91901 0.91141 0.91159 0.86726 0.86197
0.90892 0.84637 0.87050 0.86272 0.86028 0.86156 0.85995 0.85907
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.19 8.94 37.16 0.33 -0.86 16
2 C -0.04 -0.43 3.01 -92.92 -0.28 -0.71 16
3 H 0.12 0.92 7.88 -51.93 -0.41 0.51 16
4 C 0.46 5.97 7.12 36.01 0.26 6.23 16
5 O -0.51 -7.71 14.85 -18.75 -0.28 -7.99 16
6 O -0.35 -4.91 10.11 -39.27 -0.40 -5.31 16
7 C 0.13 1.83 5.59 36.00 0.20 2.03 16
8 C -0.20 -3.22 5.52 -104.57 -0.58 -3.80 16
9 C -0.05 -0.84 9.69 -39.61 -0.38 -1.22 16
10 C -0.20 -3.75 9.99 -39.40 -0.39 -4.14 16
11 C 0.17 3.79 6.65 -39.11 -0.26 3.53 16
12 O -0.21 -5.43 8.58 0.06 0.00 -5.43 16
13 C -0.39 -10.75 9.95 30.89 0.31 -10.44 16
14 H 0.11 3.00 5.44 -52.49 -0.29 2.71 16
15 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16
16 N -0.87 -24.67 13.96 55.48 0.77 -23.90 16
17 Si 0.91 21.14 28.62 -169.99 -4.86 16.28 16
18 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16
19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16
20 H -0.26 -6.06 7.11 56.52 0.40 -5.66 16
21 C -0.22 -4.69 9.17 -39.39 -0.36 -5.06 16
22 C -0.05 -0.82 9.69 -39.61 -0.38 -1.20 16
23 C -0.08 -0.75 4.40 -104.62 -0.46 -1.21 16
24 C -0.08 -0.87 7.93 -39.59 -0.31 -1.18 16
25 C -0.12 -1.10 10.05 -39.58 -0.40 -1.49 16
26 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16
27 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16
28 C -0.11 -0.96 9.67 -39.58 -0.38 -1.34 16
29 H 0.08 0.70 8.11 -51.92 -0.42 0.28 16
30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16
31 H 0.06 0.53 7.40 -51.93 -0.38 0.14 16
32 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16
33 H 0.07 0.95 8.07 -51.93 -0.42 0.53 16
34 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16
35 H 0.12 2.12 8.06 -52.48 -0.42 1.70 16
36 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16
37 H 0.14 2.96 5.64 -52.49 -0.30 2.66 16
38 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16
39 H 0.12 1.22 7.52 -52.49 -0.39 0.82 16
40 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16
41 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16
42 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16
43 H 0.12 0.83 7.95 -52.48 -0.42 0.42 16
LS Contribution 371.28 15.07 5.60 5.60
Total: -1.00 -30.63 371.28 -8.70 -39.33
By element:
Atomic # 1 Polarization: 8.92 SS G_CDS: -5.54 Total: 3.38 kcal
Atomic # 6 Polarization: -17.97 SS G_CDS: -3.99 Total: -21.96 kcal
Atomic # 7 Polarization: -24.67 SS G_CDS: 0.77 Total: -23.90 kcal
Atomic # 8 Polarization: -18.05 SS G_CDS: -0.67 Total: -18.72 kcal
Atomic # 14 Polarization: 21.14 SS G_CDS: -4.86 Total: 16.28 kcal
Total LS contribution 5.60 Total: 5.60 kcal
Total: -30.63 -8.70 -39.33 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000751995476.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -27.269 kcal
(2) G-P(sol) polarization free energy of solvation -30.630 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.899 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.699 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.329 kcal
(6) G-S(sol) free energy of system = (1) + (5) -66.598 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds