Wall clock time and date at job start Tue Mar 31 2020 16:33:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.08994 * 109.47172 * 2 1
4 4 C 1.50706 * 109.46676 * 120.00293 * 2 1 3
5 5 O 1.20820 * 119.99985 * 120.27647 * 4 2 1
6 6 O 1.34234 * 120.00044 * 299.99151 * 4 2 1
7 7 C 1.45191 * 117.00100 * 180.02562 * 6 4 2
8 8 C 1.50694 * 109.47412 * 180.02562 * 7 6 4
9 9 C 1.38306 * 119.93446 * 269.73509 * 8 7 6
10 10 C 1.38099 * 120.06736 * 179.72401 * 9 8 7
11 11 C 1.38874 * 119.93457 * 0.56719 * 10 9 8
12 12 O 1.35748 * 120.07384 * 179.68834 * 11 10 9
13 13 C 1.34827 * 117.00490 * 174.48449 * 12 11 10
14 14 H 1.08002 * 119.99701 * 5.05362 * 13 12 11
15 15 C 1.38653 * 120.00267 * 185.05225 * 13 12 11
16 16 N 1.31557 * 120.00212 * 179.97438 * 15 13 12
17 17 Si 1.86798 * 119.99778 * 0.02562 * 15 13 12
18 18 H 1.48501 * 109.47143 * 89.99828 * 17 15 13
19 19 H 1.48505 * 109.47117 * 209.99666 * 17 15 13
20 20 H 1.48493 * 109.47445 * 329.99947 * 17 15 13
21 21 C 1.38886 * 119.85823 * 359.70257 * 11 10 9
22 22 C 1.38095 * 119.93293 * 0.02562 * 21 11 10
23 23 C 1.50703 * 109.46895 * 239.99559 * 2 1 3
24 24 C 1.38230 * 120.00048 * 299.73190 * 23 2 1
25 25 C 1.38236 * 119.99557 * 179.80777 * 24 23 2
26 26 C 1.38239 * 120.00304 * 0.40045 * 25 24 23
27 27 C 1.38243 * 119.99685 * 359.85109 * 26 25 24
28 28 C 1.38230 * 119.99836 * 359.96124 * 27 26 25
29 29 H 1.09010 * 109.47028 * 300.00313 * 1 2 3
30 30 H 1.09001 * 109.47207 * 59.99925 * 1 2 3
31 31 H 1.09002 * 109.47474 * 179.97438 * 1 2 3
32 32 H 1.09001 * 109.47627 * 300.01188 * 7 6 4
33 33 H 1.09005 * 109.47124 * 60.00624 * 7 6 4
34 34 H 1.07998 * 119.96320 * 359.96821 * 9 8 7
35 35 H 1.08009 * 120.03142 * 180.27101 * 10 9 8
36 36 H 0.96992 * 119.99935 * 179.97438 * 16 15 13
37 37 H 1.08001 * 120.03115 * 179.97438 * 21 11 10
38 38 H 1.08000 * 119.96418 * 179.97438 * 22 21 11
39 39 H 1.07998 * 120.00529 * 359.97438 * 24 23 2
40 40 H 1.08001 * 120.00027 * 180.22571 * 25 24 23
41 41 H 1.07992 * 120.00424 * 179.83456 * 26 25 24
42 42 H 1.07996 * 119.99849 * 179.97438 * 27 26 25
43 43 H 1.08004 * 120.00022 * 180.02562 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0323 -0.7105 1.2305
5 8 2.7310 -1.6899 1.1197
6 8 1.7081 -0.2519 2.4497
7 6 2.2275 -0.9858 3.5897
8 6 1.7626 -0.3293 4.8640
9 6 2.5306 0.6600 5.4507
10 6 2.1044 1.2674 6.6154
11 6 0.9091 0.8757 7.2040
12 8 0.4906 1.4664 8.3523
13 6 -0.7303 1.1215 8.8085
14 1 -1.2933 0.3456 8.3110
15 6 -1.2632 1.7628 9.9163
16 7 -2.4548 1.4265 10.3611
17 14 -0.2898 3.1053 10.7763
18 1 -0.6158 4.4201 10.1680
19 1 -0.6427 3.1260 12.2186
20 1 1.1630 2.8370 10.6260
21 6 0.1429 -0.1220 6.6154
22 6 0.5718 -0.7217 5.4477
23 6 2.0323 -0.7105 -1.2304
24 6 1.7029 -2.0355 -1.4463
25 6 2.1604 -2.6860 -2.5770
26 6 2.9541 -2.0139 -3.4876
27 6 3.2878 -0.6903 -3.2691
28 6 2.8271 -0.0387 -2.1404
29 1 -0.3633 0.5139 0.8900
30 1 -0.3634 0.5138 -0.8900
31 1 -0.3634 -1.0277 -0.0005
32 1 1.8642 -2.0129 3.5569
33 1 3.3171 -0.9847 3.5566
34 1 3.4626 0.9606 4.9953
35 1 2.7025 2.0431 7.0707
36 1 -2.8273 1.8749 11.1363
37 1 -0.7869 -0.4292 7.0710
38 1 -0.0234 -1.4979 4.9898
39 1 1.0860 -2.5618 -0.7330
40 1 1.9001 -3.7202 -2.7475
41 1 3.3137 -2.5229 -4.3696
42 1 3.9082 -0.1653 -3.9803
43 1 3.0874 0.9955 -1.9698
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000751995476.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 16:33:24
Heat of formation + Delta-G solvation = -80.769468 kcal
Electronic energy + Delta-G solvation = -25672.321308 eV
Core-core repulsion = 21840.577316 eV
Total energy + Delta-G solvation = -3831.743993 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 326.135 amu
Computer time = 0.94 seconds
Orbital eigenvalues (eV)
-41.82512 -40.94124 -40.01240 -38.64926 -37.32877 -35.33751 -34.50913 -32.28311
-31.87667 -31.79436 -30.37020 -28.03276 -26.64110 -25.60531 -23.77712 -23.57547
-23.25801 -22.10014 -21.12534 -19.87852 -19.17944 -18.60045 -18.01263 -17.63172
-17.25516 -16.66766 -16.24438 -16.09842 -15.87518 -15.70548 -15.54060 -15.23104
-14.73284 -14.52955 -14.42923 -14.24005 -14.14601 -14.01210 -13.95346 -13.63185
-13.20708 -13.08801 -13.04074 -12.68494 -12.57662 -12.51826 -12.32049 -11.97202
-11.93117 -11.82270 -11.68406 -11.34776 -11.30741 -10.92332 -9.88019 -9.78735
-9.68053 -9.15494 -8.51822 -6.25209 0.28743 0.46153 0.51050 0.53218
1.16654 1.32289 1.35564 1.52183 1.82612 2.27174 2.74274 2.91458
3.01309 3.12094 3.46553 3.70645 3.84596 3.88406 3.98310 4.09648
4.10195 4.19333 4.25691 4.27245 4.31054 4.41366 4.52036 4.62120
4.66480 4.70798 4.83024 4.88440 4.88873 5.07885 5.16532 5.16583
5.21629 5.28306 5.43441 5.51793 5.56949 5.63670 5.63821 5.65598
5.74764 5.84575 6.11837 6.14901 6.72731 6.81846 7.53333 8.59284
Molecular weight = 326.14amu
Principal moments of inertia in cm(-1)
A = 0.032512 B = 0.001973 C = 0.001956
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 861.024394 B =14188.448762 C =14314.734724
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.039 4.039
3 H 0.137 0.863
4 C 0.463 3.537
5 O -0.530 6.530
6 O -0.354 6.354
7 C 0.128 3.872
8 C -0.172 4.172
9 C -0.043 4.043
10 C -0.192 4.192
11 C 0.132 3.868
12 O -0.239 6.239
13 C -0.402 4.402
14 H 0.083 0.917
15 C 0.011 3.989
16 N -0.920 5.920
17 Si 0.971 3.029
18 H -0.265 1.265
19 H -0.268 1.268
20 H -0.262 1.262
21 C -0.239 4.239
22 C -0.048 4.048
23 C -0.090 4.090
24 C -0.105 4.105
25 C -0.134 4.134
26 C -0.123 4.123
27 C -0.128 4.128
28 C -0.116 4.116
29 H 0.073 0.927
30 H 0.090 0.910
31 H 0.057 0.943
32 H 0.077 0.923
33 H 0.086 0.914
34 H 0.156 0.844
35 H 0.136 0.864
36 H 0.285 0.715
37 H 0.113 0.887
38 H 0.135 0.865
39 H 0.109 0.891
40 H 0.134 0.866
41 H 0.142 0.858
42 H 0.146 0.854
43 H 0.143 0.857
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.977 -2.828 -27.031 29.312
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.058 4.058
3 H 0.155 0.845
4 C 0.307 3.693
5 O -0.419 6.419
6 O -0.271 6.271
7 C 0.055 3.945
8 C -0.173 4.173
9 C -0.060 4.060
10 C -0.211 4.211
11 C 0.082 3.918
12 O -0.146 6.146
13 C -0.478 4.478
14 H 0.101 0.899
15 C -0.188 4.188
16 N -0.560 5.560
17 Si 0.793 3.207
18 H -0.190 1.190
19 H -0.193 1.193
20 H -0.186 1.186
21 C -0.258 4.258
22 C -0.066 4.066
23 C -0.091 4.091
24 C -0.123 4.123
25 C -0.152 4.152
26 C -0.141 4.141
27 C -0.146 4.146
28 C -0.134 4.134
29 H 0.092 0.908
30 H 0.109 0.891
31 H 0.076 0.924
32 H 0.096 0.904
33 H 0.104 0.896
34 H 0.173 0.827
35 H 0.154 0.846
36 H 0.095 0.905
37 H 0.131 0.869
38 H 0.153 0.847
39 H 0.127 0.873
40 H 0.152 0.848
41 H 0.160 0.840
42 H 0.164 0.836
43 H 0.161 0.839
Dipole moment (debyes) X Y Z Total
from point charges 11.120 -2.943 -26.709 29.081
hybrid contribution -0.348 -0.104 1.018 1.081
sum 10.772 -3.048 -25.691 28.024
Atomic orbital electron populations
1.21801 0.90128 1.03190 1.04495 1.20075 0.99139 1.00765 0.85784
0.84544 1.24135 0.77026 0.82707 0.85383 1.90661 1.36515 1.27187
1.87581 1.86617 1.69681 1.55865 1.14914 1.21663 0.98987 0.94125
0.79706 1.19282 0.97704 1.02883 0.97414 1.20965 0.99321 0.92836
0.92928 1.20519 0.96260 1.05342 0.99010 1.19740 0.94345 0.91985
0.85684 1.83521 1.33921 1.61875 1.35281 1.20720 0.91432 1.21685
1.13945 0.89942 1.25301 0.96443 1.00289 0.96761 1.69724 1.16759
1.43541 1.25956 0.85211 0.79360 0.78453 0.77674 1.18990 1.19265
1.18579 1.21267 1.02741 1.01663 1.00172 1.20926 0.94801 0.97695
0.93160 1.19455 0.99592 0.94649 0.95360 1.21033 0.99686 0.94343
0.97263 1.21377 0.98621 1.00749 0.94488 1.21507 0.97649 0.95171
0.99777 1.21453 1.00179 0.95148 0.97823 1.21324 0.96678 1.00988
0.94416 0.90797 0.89110 0.92432 0.90427 0.89554 0.82658 0.84633
0.90484 0.86899 0.84701 0.87255 0.84848 0.83971 0.83630 0.83932
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.07 8.94 71.98 0.64 -1.43 16
2 C -0.04 -0.66 3.01 -12.28 -0.04 -0.70 16
3 H 0.14 1.73 7.88 -2.39 -0.02 1.71 16
4 C 0.46 10.96 7.12 71.24 0.51 11.47 16
5 O -0.53 -15.22 14.85 21.98 0.33 -14.89 16
6 O -0.35 -8.99 10.11 -51.45 -0.52 -9.51 16
7 C 0.13 3.24 5.59 71.23 0.40 3.64 16
8 C -0.17 -5.20 5.52 -19.83 -0.11 -5.31 16
9 C -0.04 -1.27 9.69 22.25 0.22 -1.06 16
10 C -0.19 -7.05 9.99 22.39 0.22 -6.83 16
11 C 0.13 6.03 6.65 22.58 0.15 6.18 16
12 O -0.24 -12.70 8.58 -22.69 -0.19 -12.89 16
13 C -0.40 -23.26 9.95 67.92 0.68 -22.59 16
14 H 0.08 5.00 5.44 -2.91 -0.02 4.98 16
15 C 0.01 0.63 5.49 84.83 0.47 1.09 16
16 N -0.92 -54.17 13.96 21.61 0.30 -53.87 16
17 Si 0.97 44.57 28.62 68.60 1.96 46.53 16
18 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16
19 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16
20 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16
21 C -0.24 -10.29 9.17 22.39 0.21 -10.08 16
22 C -0.05 -1.64 9.69 22.25 0.22 -1.42 16
23 C -0.09 -1.64 4.40 -19.87 -0.09 -1.72 16
24 C -0.11 -2.06 7.93 22.27 0.18 -1.88 16
25 C -0.13 -2.23 10.05 22.27 0.22 -2.01 16
26 C -0.12 -1.72 10.05 22.27 0.22 -1.49 16
27 C -0.13 -1.71 10.05 22.27 0.22 -1.48 16
28 C -0.12 -1.73 9.67 22.27 0.22 -1.52 16
29 H 0.07 1.18 8.11 -2.38 -0.02 1.16 16
30 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16
31 H 0.06 0.91 7.40 -2.39 -0.02 0.89 16
32 H 0.08 1.90 8.08 -2.39 -0.02 1.88 16
33 H 0.09 1.98 8.07 -2.38 -0.02 1.96 16
34 H 0.16 3.45 8.06 -2.91 -0.02 3.43 16
35 H 0.14 4.50 8.06 -2.91 -0.02 4.48 16
36 H 0.29 15.41 8.31 -92.71 -0.77 14.64 16
37 H 0.11 5.33 5.64 -2.91 -0.02 5.31 16
38 H 0.14 3.94 8.06 -2.91 -0.02 3.91 16
39 H 0.11 2.23 7.52 -2.91 -0.02 2.21 16
40 H 0.13 1.74 8.06 -2.91 -0.02 1.72 16
41 H 0.14 1.27 8.06 -2.91 -0.02 1.24 16
42 H 0.15 1.18 8.06 -2.91 -0.02 1.15 16
43 H 0.14 1.45 7.95 -2.91 -0.02 1.42 16
Total: -1.00 -69.12 371.28 7.42 -61.70
By element:
Atomic # 1 Polarization: 19.05 SS G_CDS: 1.02 Total: 20.07 kcal
Atomic # 6 Polarization: -41.67 SS G_CDS: 4.53 Total: -37.14 kcal
Atomic # 7 Polarization: -54.17 SS G_CDS: 0.30 Total: -53.87 kcal
Atomic # 8 Polarization: -36.90 SS G_CDS: -0.39 Total: -37.29 kcal
Atomic # 14 Polarization: 44.57 SS G_CDS: 1.96 Total: 46.53 kcal
Total: -69.12 7.42 -61.70 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000751995476.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -19.073 kcal
(2) G-P(sol) polarization free energy of solvation -69.121 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.194 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.425 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.696 kcal
(6) G-S(sol) free energy of system = (1) + (5) -80.769 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.95 seconds