Wall clock time and date at job start Tue Mar 31 2020 16:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47495 * 2 1 4 4 O 1.45203 * 109.47230 * 239.99684 * 2 1 3 5 5 C 1.34229 * 116.99817 * 89.99812 * 4 2 1 6 6 O 1.20828 * 120.00053 * 0.02562 * 5 4 2 7 7 C 1.50701 * 119.99764 * 180.02562 * 5 4 2 8 8 C 1.50698 * 109.46892 * 180.02562 * 7 5 4 9 9 C 1.38321 * 119.96754 * 269.72384 * 8 7 5 10 10 C 1.38282 * 120.14251 * 179.76706 * 9 8 7 11 11 C 1.38122 * 120.06735 * 0.50860 * 10 9 8 12 12 C 1.38856 * 119.92967 * 359.74355 * 11 10 9 13 13 O 1.35746 * 120.06869 * 179.97438 * 12 11 10 14 14 C 1.34822 * 117.00179 * 354.49274 * 13 12 11 15 15 H 1.08004 * 120.00125 * 5.05767 * 14 13 12 16 16 C 1.38658 * 120.00494 * 185.05954 * 14 13 12 17 17 N 1.31562 * 119.99665 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00669 * 180.02562 * 16 14 13 19 19 H 1.48509 * 109.47165 * 59.99229 * 18 16 14 20 20 H 1.48491 * 109.47459 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46822 * 299.99711 * 18 16 14 22 22 C 1.38086 * 119.96949 * 89.99665 * 8 7 5 23 23 C 1.50703 * 109.47116 * 120.00199 * 2 1 3 24 24 C 1.38242 * 119.99380 * 264.99876 * 23 2 1 25 25 C 1.38232 * 119.99393 * 180.02562 * 24 23 2 26 26 C 1.38232 * 120.00381 * 359.97138 * 25 24 23 27 27 C 1.38234 * 120.00022 * 0.03345 * 26 25 24 28 28 C 1.38232 * 120.00391 * 84.97619 * 23 2 1 29 29 H 1.08992 * 109.47241 * 60.00082 * 1 2 3 30 30 H 1.09000 * 109.47246 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46925 * 299.99852 * 1 2 3 32 32 H 1.09003 * 109.46907 * 299.99489 * 7 5 4 33 33 H 1.08999 * 109.47449 * 59.99982 * 7 5 4 34 34 H 1.08003 * 119.92976 * 359.97438 * 9 8 7 35 35 H 1.08001 * 119.96745 * 180.24822 * 10 9 8 36 36 H 1.07994 * 120.03756 * 179.72119 * 11 10 9 37 37 H 0.97001 * 120.00303 * 180.02562 * 17 16 14 38 38 H 1.08001 * 120.02928 * 359.96043 * 22 8 7 39 39 H 1.07993 * 120.00258 * 359.97437 * 24 23 2 40 40 H 1.08006 * 119.99777 * 179.69831 * 25 24 23 41 41 H 1.08002 * 119.99840 * 179.97438 * 26 25 24 42 42 H 1.08001 * 120.00312 * 180.02562 * 27 26 25 43 43 H 1.07995 * 120.00101 * 359.97438 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6846 -1.1855 5 6 2.2171 0.0639 -2.2811 6 8 1.9982 1.2518 -2.2504 7 6 2.7183 -0.5774 -3.5494 8 6 2.8614 0.4728 -4.6207 9 6 1.7989 0.7514 -5.4614 10 6 1.9246 1.7177 -6.4426 11 6 3.1158 2.4006 -6.5927 12 6 4.1860 2.1196 -5.7537 13 8 5.3581 2.7886 -5.8990 14 6 5.4564 3.6306 -6.9474 15 1 4.5982 3.8104 -7.5780 16 6 6.6593 4.2657 -7.2163 17 7 7.7047 4.0471 -6.4479 18 14 6.7954 5.4328 -8.6683 19 1 5.8304 6.5489 -8.4985 20 1 8.1748 5.9780 -8.7378 21 1 6.4886 4.6999 -9.9229 22 6 4.0548 1.1521 -4.7657 23 6 2.0324 -0.7105 1.2305 24 6 2.3611 0.0141 2.3610 25 6 2.8224 -0.6376 3.4894 26 6 2.9544 -2.0136 3.4877 27 6 2.6257 -2.7380 2.3572 28 6 2.1639 -2.0865 1.2288 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.6872 -1.0409 -3.3639 33 1 2.0088 -1.3371 -3.8774 34 1 0.8680 0.2154 -5.3492 35 1 1.0919 1.9358 -7.0949 36 1 3.2150 3.1520 -7.3620 37 1 8.5461 4.4917 -6.6357 38 1 4.8852 0.9314 -4.1114 39 1 2.2584 1.0891 2.3622 40 1 3.0839 -0.0711 4.3711 41 1 3.3152 -2.5226 4.3693 42 1 2.7284 -3.8131 2.3559 43 1 1.9064 -2.6525 0.3459 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760352394.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:00 Heat of formation + Delta-G solvation = -84.518455 kcal Electronic energy + Delta-G solvation = -25892.631501 eV Core-core repulsion = 22060.724940 eV Total energy + Delta-G solvation = -3831.906561 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.135 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.81769 -40.76286 -40.07221 -38.47956 -37.51157 -34.39891 -34.19140 -33.43485 -31.81060 -30.95100 -30.26638 -28.81394 -27.29590 -25.23635 -23.79576 -23.35814 -23.06941 -22.03476 -21.33373 -19.52571 -18.83857 -18.76259 -18.19303 -17.33234 -16.99200 -16.73823 -16.29756 -16.13581 -16.07281 -15.67917 -15.48033 -15.12334 -14.92248 -14.53864 -14.42109 -14.25324 -14.14762 -13.96527 -13.62962 -13.49625 -13.18384 -12.99294 -12.92956 -12.61634 -12.50398 -12.43606 -12.25243 -12.15034 -12.11858 -11.82052 -11.70599 -11.49302 -11.22582 -10.80590 -9.84506 -9.75614 -9.69250 -9.01292 -8.47612 -6.16453 0.29118 0.44461 0.48104 0.72619 1.19987 1.33851 1.44681 1.50589 1.70753 2.17354 2.81291 2.85186 3.15015 3.38958 3.51561 3.69135 3.88886 3.89548 4.06215 4.10026 4.16926 4.18299 4.28546 4.29182 4.37341 4.52711 4.57960 4.59408 4.60786 4.71532 4.72616 4.77490 5.00568 5.02207 5.08931 5.11091 5.14417 5.25666 5.35609 5.54428 5.60846 5.61178 5.66369 5.69020 5.71704 6.01366 6.07011 6.20012 6.75168 6.96664 7.77690 8.75687 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.018412 B = 0.002306 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.382069 B =12138.328069 C =13016.178257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.123 3.877 3 H 0.073 0.927 4 O -0.346 6.346 5 C 0.466 3.534 6 O -0.533 6.533 7 C -0.062 4.062 8 C -0.036 4.036 9 C -0.176 4.176 10 C -0.072 4.072 11 C -0.242 4.242 12 C 0.111 3.889 13 O -0.234 6.234 14 C -0.415 4.415 15 H 0.102 0.898 16 C -0.024 4.024 17 N -0.922 5.922 18 Si 1.020 2.980 19 H -0.258 1.258 20 H -0.271 1.271 21 H -0.255 1.255 22 C -0.190 4.190 23 C -0.105 4.105 24 C -0.123 4.123 25 C -0.126 4.126 26 C -0.120 4.120 27 C -0.126 4.126 28 C -0.105 4.105 29 H 0.056 0.944 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.130 0.870 33 H 0.157 0.843 34 H 0.151 0.849 35 H 0.148 0.852 36 H 0.120 0.880 37 H 0.273 0.727 38 H 0.107 0.893 39 H 0.127 0.873 40 H 0.143 0.857 41 H 0.147 0.853 42 H 0.146 0.854 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.152 -14.730 15.459 26.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.068 3.932 3 H 0.091 0.909 4 O -0.263 6.263 5 C 0.310 3.690 6 O -0.421 6.421 7 C -0.099 4.099 8 C -0.037 4.037 9 C -0.194 4.194 10 C -0.090 4.090 11 C -0.261 4.261 12 C 0.061 3.939 13 O -0.141 6.141 14 C -0.491 4.491 15 H 0.119 0.881 16 C -0.221 4.221 17 N -0.561 5.561 18 Si 0.839 3.161 19 H -0.183 1.183 20 H -0.196 1.196 21 H -0.179 1.179 22 C -0.210 4.210 23 C -0.105 4.105 24 C -0.141 4.141 25 C -0.144 4.144 26 C -0.138 4.138 27 C -0.144 4.144 28 C -0.123 4.123 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.148 0.852 33 H 0.174 0.826 34 H 0.169 0.831 35 H 0.166 0.834 36 H 0.137 0.863 37 H 0.082 0.918 38 H 0.125 0.875 39 H 0.145 0.855 40 H 0.161 0.839 41 H 0.164 0.836 42 H 0.163 0.837 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -14.818 -14.314 15.665 25.881 hybrid contribution 0.583 1.191 -0.554 1.437 sum -14.235 -13.124 15.111 24.560 Atomic orbital electron populations 1.22126 0.91788 1.03977 1.03374 1.21515 0.95691 0.95521 0.80450 0.90928 1.86532 1.77173 1.42300 1.20278 1.24055 0.73586 0.85663 0.85667 1.90710 1.48696 1.18277 1.84463 1.20394 1.06409 0.97133 0.85930 1.19116 0.92404 0.96193 0.95943 1.21009 0.99023 1.01510 0.97856 1.21157 0.95964 0.94333 0.97579 1.21340 0.94906 1.05938 1.03925 1.19858 0.86910 0.91926 0.95193 1.83936 1.31521 1.52100 1.46506 1.21798 0.99125 1.22077 1.06104 0.88105 1.26626 0.93435 0.99997 1.02086 1.70187 1.02295 1.43620 1.39955 0.84636 0.78313 0.77160 0.76020 1.18287 1.19560 1.17926 1.20231 0.99698 0.99861 1.01169 1.19664 1.02155 0.94894 0.93812 1.21172 0.99310 1.00405 0.93242 1.21410 0.99254 0.95340 0.98383 1.21574 0.98849 0.94243 0.99154 1.21503 0.98743 1.01307 0.92850 1.21188 0.98535 0.93422 0.99132 0.92503 0.90174 0.89387 0.85216 0.82562 0.83088 0.83396 0.86256 0.91832 0.87504 0.85502 0.83882 0.83570 0.83658 0.84876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 9.53 71.98 0.69 -2.17 16 2 C 0.12 2.80 2.77 29.85 0.08 2.88 16 3 H 0.07 1.96 7.06 -2.39 -0.02 1.94 16 4 O -0.35 -8.41 9.03 -51.40 -0.46 -8.87 16 5 C 0.47 13.34 7.92 71.24 0.56 13.90 16 6 O -0.53 -19.83 15.25 21.96 0.33 -19.50 16 7 C -0.06 -1.50 5.94 29.10 0.17 -1.32 16 8 C -0.04 -1.25 4.37 -19.88 -0.09 -1.33 16 9 C -0.18 -5.56 9.70 22.30 0.22 -5.34 16 10 C -0.07 -2.55 10.04 22.25 0.22 -2.33 16 11 C -0.24 -10.95 9.17 22.39 0.21 -10.74 16 12 C 0.11 5.80 6.65 22.58 0.15 5.95 16 13 O -0.23 -14.62 9.76 -22.62 -0.22 -14.84 16 14 C -0.41 -24.90 9.49 67.92 0.64 -24.26 16 15 H 0.10 5.54 5.20 -2.91 -0.02 5.52 16 16 C -0.02 -1.41 5.49 84.83 0.47 -0.95 16 17 N -0.92 -57.99 13.67 21.62 0.30 -57.70 16 18 Si 1.02 43.78 29.55 68.60 2.03 45.81 16 19 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 20 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 21 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 22 C -0.19 -8.52 9.65 22.39 0.22 -8.30 16 23 C -0.11 -2.14 5.01 -19.86 -0.10 -2.24 16 24 C -0.12 -2.29 9.68 22.27 0.22 -2.07 16 25 C -0.13 -1.91 10.05 22.27 0.22 -1.69 16 26 C -0.12 -1.64 10.05 22.27 0.22 -1.41 16 27 C -0.13 -1.83 10.05 22.27 0.22 -1.61 16 28 C -0.10 -1.87 9.35 22.27 0.21 -1.67 16 29 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.13 2.74 8.08 -2.39 -0.02 2.72 16 33 H 0.16 2.40 8.08 -2.39 -0.02 2.38 16 34 H 0.15 3.48 8.06 -2.91 -0.02 3.45 16 35 H 0.15 4.03 8.06 -2.91 -0.02 4.01 16 36 H 0.12 5.45 5.64 -2.91 -0.02 5.43 16 37 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 38 H 0.11 4.80 8.06 -2.91 -0.02 4.77 16 39 H 0.13 2.14 8.06 -2.91 -0.02 2.12 16 40 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 41 H 0.15 1.21 8.06 -2.91 -0.02 1.19 16 42 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 43 H 0.13 2.16 7.63 -2.91 -0.02 2.14 16 Total: -1.00 -79.83 374.33 7.53 -72.31 By element: Atomic # 1 Polarization: 26.49 SS G_CDS: 1.02 Total: 27.51 kcal Atomic # 6 Polarization: -49.25 SS G_CDS: 4.54 Total: -44.71 kcal Atomic # 7 Polarization: -57.99 SS G_CDS: 0.30 Total: -57.70 kcal Atomic # 8 Polarization: -42.86 SS G_CDS: -0.35 Total: -43.21 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -79.83 7.53 -72.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760352394.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.211 kcal (2) G-P(sol) polarization free energy of solvation -79.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds