Wall clock time and date at job start Tue Mar 31 2020 14:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47315 * 2 1 4 4 C 1.53002 * 109.47225 * 239.99573 * 2 1 3 5 5 C 1.50694 * 109.47181 * 60.00096 * 4 2 1 6 6 H 1.08001 * 119.99953 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00119 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99798 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 119.99789 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.46928 * 90.00103 * 9 7 5 11 11 H 1.48499 * 109.47126 * 209.99686 * 9 7 5 12 12 H 1.48499 * 109.47416 * 329.99833 * 9 7 5 13 13 C 1.53002 * 109.46793 * 119.99643 * 2 1 3 14 14 N 1.46502 * 109.47051 * 300.00033 * 13 2 1 15 15 C 1.34779 * 119.99790 * 179.97438 * 14 13 2 16 16 O 1.21592 * 120.00086 * 0.02562 * 15 14 13 17 17 N 1.34773 * 119.99971 * 179.97438 * 15 14 13 18 18 N 1.40103 * 120.00200 * 0.02562 * 17 15 14 19 19 C 1.39771 * 120.00231 * 180.02562 * 18 17 15 20 20 C 1.39325 * 120.47811 * 179.97438 * 19 18 17 21 21 C 1.38458 * 118.37957 * 179.97438 * 20 19 18 22 22 C 1.38432 * 119.22491 * 359.97438 * 21 20 19 23 23 Cl 1.73599 * 119.55073 * 179.97438 * 22 21 20 24 24 N 1.31926 * 120.89061 * 0.25995 * 22 21 20 25 25 C 1.31857 * 121.78388 * 359.46549 * 24 22 21 26 26 H 1.09002 * 109.47246 * 300.00335 * 1 2 3 27 27 H 1.08998 * 109.46824 * 60.00096 * 1 2 3 28 28 H 1.08995 * 109.47435 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46977 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.46399 * 299.99564 * 3 2 1 31 31 H 1.08992 * 109.47254 * 59.99635 * 3 2 1 32 32 H 1.08998 * 109.47143 * 180.02562 * 4 2 1 33 33 H 1.09000 * 109.46954 * 299.99895 * 4 2 1 34 34 H 0.97001 * 119.99309 * 179.97438 * 8 7 5 35 35 H 1.09006 * 109.47059 * 180.02562 * 13 2 1 36 36 H 1.09000 * 109.47515 * 60.00026 * 13 2 1 37 37 H 0.96998 * 119.99871 * 359.97438 * 14 13 2 38 38 H 0.96999 * 119.99937 * 180.02562 * 17 15 14 39 39 H 0.97005 * 119.99369 * 359.97438 * 18 17 15 40 40 H 1.08009 * 120.81290 * 359.95581 * 20 19 18 41 41 H 1.07995 * 120.38919 * 180.02562 * 21 20 19 42 42 H 1.08004 * 119.66260 * 180.26827 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5378 -0.0111 -2.4797 6 1 0.9172 0.8673 -2.3807 7 6 1.8713 -0.4819 -3.7319 8 7 1.4333 0.1384 -4.8058 9 14 2.9452 -2.0007 -3.9031 10 1 2.0866 -3.2114 -3.9491 11 1 3.7376 -1.9080 -5.1556 12 1 3.8652 -2.0901 -2.7408 13 6 2.0399 -0.7212 1.2493 14 7 1.5515 -0.0305 2.4454 15 6 1.8766 -0.4912 3.6696 16 8 2.5757 -1.4798 3.7812 17 7 1.4278 0.1445 4.7700 18 7 0.6228 1.2839 4.6414 19 6 0.1577 1.9435 5.7825 20 6 -0.6429 3.0778 5.6662 21 6 -1.0799 3.6966 6.8252 22 6 -0.7105 3.1721 8.0519 23 17 -1.2530 3.9416 9.5104 24 7 0.0529 2.0988 8.1275 25 6 0.4857 1.4769 7.0483 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9562 -0.8901 31 1 1.6767 1.9564 0.8899 32 1 3.1300 -0.7217 -1.2489 33 1 1.6767 -1.7490 -1.2491 34 1 1.6683 -0.1927 -5.6867 35 1 3.1300 -0.7208 1.2496 36 1 1.6766 -1.7489 1.2494 37 1 0.9942 0.7584 2.3563 38 1 1.6621 -0.1869 5.6510 39 1 0.3888 1.6155 3.7603 40 1 -0.9159 3.4651 4.6956 41 1 -1.7023 4.5776 6.7728 42 1 1.1055 0.5983 7.1501 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807591793.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:37 Heat of formation + Delta-G solvation = 35.057007 kcal Electronic energy + Delta-G solvation = -24684.206864 eV Core-core repulsion = 20919.638137 eV Total energy + Delta-G solvation = -3764.568727 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.125 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.01202 -40.16191 -37.66584 -37.16026 -36.53664 -33.84228 -33.30000 -32.24400 -31.75512 -28.75713 -27.91408 -26.70147 -26.43460 -24.47579 -23.35836 -22.73366 -21.01142 -19.67000 -18.97453 -17.98377 -17.56821 -16.99686 -16.69643 -16.23610 -15.89460 -15.40289 -15.02630 -14.65501 -14.47111 -14.11943 -13.99483 -13.79715 -13.59453 -13.18313 -13.02424 -12.85721 -12.50178 -12.34910 -11.71651 -11.61919 -11.36456 -11.26184 -11.10737 -10.71813 -10.63618 -10.60778 -10.48419 -10.12998 -10.09154 -9.82620 -9.75522 -9.65806 -9.09001 -9.07862 -8.60097 -7.82813 -6.10899 -4.08813 0.55330 0.71209 1.40919 1.59568 2.85592 2.91594 3.21149 3.26757 3.35307 3.38487 3.96190 4.10894 4.29868 4.39634 4.46522 4.64397 5.03972 5.18057 5.20884 5.34001 5.39833 5.41907 5.47880 5.62717 5.94570 5.95289 5.95752 6.04724 6.16578 6.26158 6.46495 6.50013 6.68037 6.77762 6.88044 6.89773 6.93530 7.10190 7.26570 7.30690 7.70135 7.82229 8.27325 8.44943 8.92259 9.51515 11.01623 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.028762 B = 0.002089 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.269238 B =13402.409504 C =14179.309697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.063 4.063 3 C -0.128 4.128 4 C -0.002 4.002 5 C -0.513 4.513 6 H 0.078 0.922 7 C 0.067 3.933 8 N -0.902 5.902 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.140 3.860 14 N -0.731 5.731 15 C 0.710 3.290 16 O -0.572 6.572 17 N -0.539 5.539 18 N -0.534 5.534 19 C 0.177 3.823 20 C -0.136 4.136 21 C -0.094 4.094 22 C 0.113 3.887 23 Cl -0.039 7.039 24 N -0.432 5.432 25 C 0.047 3.953 26 H 0.027 0.973 27 H 0.074 0.926 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.074 0.926 31 H 0.027 0.973 32 H 0.019 0.981 33 H 0.015 0.985 34 H 0.263 0.737 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.391 0.609 38 H 0.431 0.569 39 H 0.427 0.573 40 H 0.150 0.850 41 H 0.149 0.851 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.416 7.698 23.394 25.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.064 4.064 3 C -0.186 4.186 4 C -0.039 4.039 5 C -0.551 4.551 6 H 0.096 0.904 7 C -0.135 4.135 8 N -0.541 5.541 9 Si 0.703 3.297 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.017 3.983 14 N -0.388 5.388 15 C 0.410 3.590 16 O -0.446 6.446 17 N -0.295 5.295 18 N -0.262 5.262 19 C 0.070 3.930 20 C -0.168 4.168 21 C -0.116 4.116 22 C -0.054 4.054 23 Cl -0.011 7.011 24 N -0.142 5.142 25 C -0.117 4.117 26 H 0.046 0.954 27 H 0.093 0.907 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.093 0.907 31 H 0.046 0.954 32 H 0.038 0.962 33 H 0.033 0.967 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.226 0.774 38 H 0.277 0.723 39 H 0.271 0.729 40 H 0.168 0.832 41 H 0.167 0.833 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -4.570 6.517 24.005 25.290 hybrid contribution 0.014 -0.058 -0.958 0.960 sum -4.556 6.459 23.047 24.364 Atomic orbital electron populations 1.21783 0.94758 1.01422 1.00626 1.20721 0.95832 0.95949 0.93871 1.21779 1.00651 0.95514 1.00624 1.19588 0.96387 0.95540 0.92429 1.21044 1.32034 1.13413 0.88581 0.90405 1.25005 0.95679 0.96774 0.95993 1.69899 1.45776 1.40522 0.97918 0.86853 0.81308 0.83854 0.77718 1.20350 1.21475 1.18972 1.21644 0.99010 0.95854 0.81764 1.45373 1.55817 1.32942 1.04665 1.15755 0.80516 0.82593 0.80169 1.91044 1.42708 1.26702 1.84103 1.44640 1.52640 1.22729 1.09519 1.43278 1.52979 1.23286 1.06670 1.18789 0.94259 0.92428 0.87547 1.20936 1.00434 0.95462 0.99966 1.21595 0.99390 1.00515 0.90064 1.21330 1.01003 0.95329 0.87721 1.98395 1.87683 1.78351 1.36626 1.66802 1.08069 1.06684 1.32613 1.21915 1.03262 1.01340 0.85199 0.95405 0.90682 0.93209 0.93204 0.90679 0.95401 0.96244 0.96693 0.92732 0.91494 0.91494 0.77359 0.72319 0.72919 0.83222 0.83287 0.82505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 8.05 37.16 0.30 -1.70 16 2 C -0.06 -1.05 0.54 -154.50 -0.08 -1.13 16 3 C -0.13 -2.00 8.05 37.16 0.30 -1.70 16 4 C 0.00 -0.03 3.11 -27.89 -0.09 -0.12 16 5 C -0.51 -13.12 8.20 -34.44 -0.28 -13.41 16 6 H 0.08 2.10 5.92 -52.49 -0.31 1.79 16 7 C 0.07 1.83 5.47 -17.82 -0.10 1.73 16 8 N -0.90 -26.44 13.96 55.43 0.77 -25.67 16 9 Si 0.88 20.88 27.47 -169.99 -4.67 16.21 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 13 C 0.14 2.12 4.56 -4.04 -0.02 2.10 16 14 N -0.73 -8.80 4.92 -65.22 -0.32 -9.12 16 15 C 0.71 9.08 8.68 -86.92 -0.75 8.32 16 16 O -0.57 -9.65 17.18 5.28 0.09 -9.56 16 17 N -0.54 -4.87 6.23 27.63 0.17 -4.70 16 18 N -0.53 -3.71 6.46 32.50 0.21 -3.50 16 19 C 0.18 1.25 6.75 -83.61 -0.56 0.68 16 20 C -0.14 -0.78 10.04 -39.10 -0.39 -1.18 16 21 C -0.09 -0.60 9.87 -39.43 -0.39 -0.99 16 22 C 0.11 0.99 7.27 -17.44 -0.13 0.86 16 23 Cl -0.04 -0.32 29.10 -51.86 -1.51 -1.83 16 24 N -0.43 -4.27 10.33 -10.20 -0.11 -4.38 16 25 C 0.05 0.39 10.65 -17.32 -0.18 0.20 16 26 H 0.03 0.33 6.86 -51.93 -0.36 -0.02 16 27 H 0.07 1.34 6.62 -51.93 -0.34 1.00 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 1.34 6.62 -51.93 -0.34 1.00 16 31 H 0.03 0.33 6.86 -51.93 -0.36 -0.02 16 32 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 33 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 34 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.39 3.76 4.08 -40.82 -0.17 3.59 16 38 H 0.43 3.36 6.74 -182.60 -1.23 2.13 16 39 H 0.43 2.43 6.73 -182.59 -1.23 1.20 16 40 H 0.15 0.47 8.06 -52.48 -0.42 0.05 16 41 H 0.15 0.59 8.06 -52.49 -0.42 0.17 16 42 H 0.16 1.03 6.22 -52.48 -0.33 0.70 16 LS Contribution 356.05 15.07 5.37 5.37 Total: -1.00 -31.87 356.05 -9.51 -41.38 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -7.13 Total: 2.12 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -2.38 Total: -6.32 kcal Atomic # 7 Polarization: -48.09 SS G_CDS: 0.73 Total: -47.36 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.09 Total: -9.56 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.67 Total: 16.21 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -1.51 Total: -1.83 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.87 -9.51 -41.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807591793.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.432 kcal (2) G-P(sol) polarization free energy of solvation -31.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds