Wall clock time and date at job start Tue Mar 31 2020 14:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47315 * 2 1 4 4 C 1.53002 * 109.47225 * 239.99573 * 2 1 3 5 5 C 1.50694 * 109.47181 * 60.00096 * 4 2 1 6 6 H 1.08001 * 119.99953 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00119 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99798 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 119.99789 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.46928 * 90.00103 * 9 7 5 11 11 H 1.48499 * 109.47126 * 209.99686 * 9 7 5 12 12 H 1.48499 * 109.47416 * 329.99833 * 9 7 5 13 13 C 1.53002 * 109.46793 * 119.99643 * 2 1 3 14 14 N 1.46502 * 109.47051 * 300.00033 * 13 2 1 15 15 C 1.34779 * 119.99790 * 179.97438 * 14 13 2 16 16 O 1.21592 * 120.00086 * 0.02562 * 15 14 13 17 17 N 1.34773 * 119.99971 * 179.97438 * 15 14 13 18 18 N 1.40103 * 120.00200 * 0.02562 * 17 15 14 19 19 C 1.39771 * 120.00231 * 180.02562 * 18 17 15 20 20 C 1.39325 * 120.47811 * 179.97438 * 19 18 17 21 21 C 1.38458 * 118.37957 * 179.97438 * 20 19 18 22 22 C 1.38432 * 119.22491 * 359.97438 * 21 20 19 23 23 Cl 1.73599 * 119.55073 * 179.97438 * 22 21 20 24 24 N 1.31926 * 120.89061 * 0.25995 * 22 21 20 25 25 C 1.31857 * 121.78388 * 359.46549 * 24 22 21 26 26 H 1.09002 * 109.47246 * 300.00335 * 1 2 3 27 27 H 1.08998 * 109.46824 * 60.00096 * 1 2 3 28 28 H 1.08995 * 109.47435 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46977 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.46399 * 299.99564 * 3 2 1 31 31 H 1.08992 * 109.47254 * 59.99635 * 3 2 1 32 32 H 1.08998 * 109.47143 * 180.02562 * 4 2 1 33 33 H 1.09000 * 109.46954 * 299.99895 * 4 2 1 34 34 H 0.97001 * 119.99309 * 179.97438 * 8 7 5 35 35 H 1.09006 * 109.47059 * 180.02562 * 13 2 1 36 36 H 1.09000 * 109.47515 * 60.00026 * 13 2 1 37 37 H 0.96998 * 119.99871 * 359.97438 * 14 13 2 38 38 H 0.96999 * 119.99937 * 180.02562 * 17 15 14 39 39 H 0.97005 * 119.99369 * 359.97438 * 18 17 15 40 40 H 1.08009 * 120.81290 * 359.95581 * 20 19 18 41 41 H 1.07995 * 120.38919 * 180.02562 * 21 20 19 42 42 H 1.08004 * 119.66260 * 180.26827 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5378 -0.0111 -2.4797 6 1 0.9172 0.8673 -2.3807 7 6 1.8713 -0.4819 -3.7319 8 7 1.4333 0.1384 -4.8058 9 14 2.9452 -2.0007 -3.9031 10 1 2.0866 -3.2114 -3.9491 11 1 3.7376 -1.9080 -5.1556 12 1 3.8652 -2.0901 -2.7408 13 6 2.0399 -0.7212 1.2493 14 7 1.5515 -0.0305 2.4454 15 6 1.8766 -0.4912 3.6696 16 8 2.5757 -1.4798 3.7812 17 7 1.4278 0.1445 4.7700 18 7 0.6228 1.2839 4.6414 19 6 0.1577 1.9435 5.7825 20 6 -0.6429 3.0778 5.6662 21 6 -1.0799 3.6966 6.8252 22 6 -0.7105 3.1721 8.0519 23 17 -1.2530 3.9416 9.5104 24 7 0.0529 2.0988 8.1275 25 6 0.4857 1.4769 7.0483 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9562 -0.8901 31 1 1.6767 1.9564 0.8899 32 1 3.1300 -0.7217 -1.2489 33 1 1.6767 -1.7490 -1.2491 34 1 1.6683 -0.1927 -5.6867 35 1 3.1300 -0.7208 1.2496 36 1 1.6766 -1.7489 1.2494 37 1 0.9942 0.7584 2.3563 38 1 1.6621 -0.1869 5.6510 39 1 0.3888 1.6155 3.7603 40 1 -0.9159 3.4651 4.6956 41 1 -1.7023 4.5776 6.7728 42 1 1.1055 0.5983 7.1501 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807591793.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:36 Heat of formation + Delta-G solvation = 13.264438 kcal Electronic energy + Delta-G solvation = -24685.151861 eV Core-core repulsion = 20919.638137 eV Total energy + Delta-G solvation = -3765.513724 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.125 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.72842 -41.00507 -38.89545 -37.93551 -37.22621 -35.22867 -34.13862 -33.75561 -32.47480 -29.72571 -29.34763 -27.97622 -27.62390 -25.13528 -24.36586 -23.94087 -22.05647 -20.65572 -19.67259 -19.20566 -18.86753 -18.14130 -17.46474 -16.96376 -16.86774 -16.52122 -16.08324 -15.70596 -15.49244 -15.33672 -15.11968 -15.07777 -14.24312 -14.21975 -14.15348 -14.12108 -13.67464 -13.56303 -12.94034 -12.84025 -12.61793 -12.36789 -12.29255 -12.22951 -12.15426 -11.81335 -11.69305 -11.50966 -11.18717 -11.08138 -10.90318 -10.69551 -10.69217 -10.45803 -10.09239 -8.45090 -8.21289 -6.21017 0.01399 0.19214 0.74531 0.99214 1.36864 1.40397 1.49357 1.93733 1.94352 2.39983 2.64985 3.14566 3.38387 3.56428 3.81625 3.88484 3.97956 4.06266 4.07063 4.15851 4.58222 4.62530 4.71875 4.73866 4.86852 4.92963 4.95138 5.01170 5.08090 5.11129 5.28661 5.31979 5.40288 5.43101 5.43895 5.57363 5.71643 5.76828 5.90296 6.25930 6.39015 6.73823 6.86228 7.01474 7.33663 7.41818 8.93989 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.028762 B = 0.002089 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.269238 B =13402.409504 C =14179.309697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.057 4.057 3 C -0.125 4.125 4 C -0.005 4.005 5 C -0.499 4.499 6 H 0.055 0.945 7 C 0.004 3.996 8 N -0.950 5.950 9 Si 0.932 3.068 10 H -0.273 1.273 11 H -0.291 1.291 12 H -0.250 1.250 13 C 0.154 3.846 14 N -0.720 5.720 15 C 0.712 3.288 16 O -0.616 6.616 17 N -0.526 5.526 18 N -0.526 5.526 19 C 0.176 3.824 20 C -0.124 4.124 21 C -0.091 4.091 22 C 0.094 3.906 23 Cl -0.045 7.045 24 N -0.464 5.464 25 C 0.033 3.967 26 H 0.070 0.930 27 H 0.046 0.954 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.046 0.954 31 H 0.070 0.930 32 H 0.015 0.985 33 H 0.014 0.986 34 H 0.262 0.738 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.405 0.595 38 H 0.438 0.562 39 H 0.436 0.564 40 H 0.183 0.817 41 H 0.174 0.826 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.804 8.228 24.903 26.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.058 4.058 3 C -0.182 4.182 4 C -0.043 4.043 5 C -0.537 4.537 6 H 0.073 0.927 7 C -0.192 4.192 8 N -0.592 5.592 9 Si 0.758 3.242 10 H -0.198 1.198 11 H -0.218 1.218 12 H -0.174 1.174 13 C 0.029 3.971 14 N -0.378 5.378 15 C 0.411 3.589 16 O -0.493 6.493 17 N -0.281 5.281 18 N -0.257 5.257 19 C 0.069 3.931 20 C -0.155 4.155 21 C -0.113 4.113 22 C -0.072 4.072 23 Cl -0.017 7.017 24 N -0.174 5.174 25 C -0.130 4.130 26 H 0.088 0.912 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.088 0.912 32 H 0.034 0.966 33 H 0.032 0.968 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.243 0.757 38 H 0.285 0.715 39 H 0.281 0.719 40 H 0.200 0.800 41 H 0.192 0.808 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -4.985 7.086 25.564 26.992 hybrid contribution 0.059 -0.118 -1.337 1.344 sum -4.926 6.968 24.227 25.686 Atomic orbital electron populations 1.21720 0.93772 1.01378 1.01346 1.20560 0.96559 0.96165 0.92489 1.21717 1.00348 0.94789 1.01349 1.19577 0.96054 0.95566 0.93104 1.21368 1.30128 1.12266 0.89982 0.92729 1.25830 0.97500 0.99841 0.96029 1.70039 1.48145 1.42639 0.98410 0.85925 0.79918 0.80503 0.77888 1.19848 1.21760 1.17415 1.21253 0.98406 0.95417 0.82000 1.45018 1.55922 1.33165 1.03700 1.15716 0.80238 0.82242 0.80676 1.91022 1.44648 1.28737 1.84885 1.44336 1.51997 1.22957 1.08811 1.43198 1.52790 1.22509 1.07166 1.18821 0.94478 0.92820 0.86987 1.21320 0.98793 0.94274 1.01159 1.21891 0.99106 1.01041 0.89219 1.21630 1.01537 0.95596 0.88439 1.98388 1.87722 1.78365 1.37245 1.66735 1.09220 1.07694 1.33723 1.22095 1.03636 1.01749 0.85547 0.91161 0.93469 0.93659 0.93693 0.93459 0.91154 0.96629 0.96780 0.92947 0.92372 0.92300 0.75710 0.71498 0.71873 0.79955 0.80833 0.81815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.63 8.05 71.98 0.58 -3.05 16 2 C -0.06 -1.80 0.54 -52.18 -0.03 -1.83 16 3 C -0.12 -3.63 8.05 71.98 0.58 -3.05 16 4 C -0.01 -0.21 3.11 29.85 0.09 -0.12 16 5 C -0.50 -25.83 8.20 25.60 0.21 -25.62 16 6 H 0.05 3.03 5.92 -2.91 -0.02 3.01 16 7 C 0.00 0.24 5.47 84.65 0.46 0.70 16 8 N -0.95 -57.14 13.96 21.45 0.30 -56.85 16 9 Si 0.93 43.16 27.47 68.60 1.88 45.04 16 10 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 12 H -0.25 -10.87 6.54 99.48 0.65 -10.22 16 13 C 0.15 4.31 4.56 86.38 0.39 4.70 16 14 N -0.72 -15.05 4.92 -478.51 -2.36 -17.41 16 15 C 0.71 16.46 8.68 179.05 1.55 18.01 16 16 O -0.62 -19.94 17.18 -4.00 -0.07 -20.01 16 17 N -0.53 -8.08 6.23 -184.74 -1.15 -9.23 16 18 N -0.53 -5.40 6.46 -51.10 -0.33 -5.73 16 19 C 0.18 1.93 6.75 38.28 0.26 2.18 16 20 C -0.12 -0.94 10.04 22.58 0.23 -0.71 16 21 C -0.09 -0.89 9.87 22.37 0.22 -0.67 16 22 C 0.09 1.50 7.27 84.72 0.62 2.12 16 23 Cl -0.05 -0.71 29.10 -2.72 -0.08 -0.79 16 24 N -0.46 -8.66 10.33 -186.17 -1.92 -10.59 16 25 C 0.03 0.49 10.65 84.83 0.90 1.39 16 26 H 0.07 1.42 6.86 -2.39 -0.02 1.40 16 27 H 0.05 1.64 6.62 -2.39 -0.02 1.63 16 28 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.05 1.65 6.62 -2.39 -0.02 1.63 16 31 H 0.07 1.42 6.86 -2.39 -0.02 1.40 16 32 H 0.02 0.67 7.20 -2.39 -0.02 0.65 16 33 H 0.01 0.59 7.57 -2.39 -0.02 0.57 16 34 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 35 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 36 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.40 6.01 4.08 -92.71 -0.38 5.63 16 38 H 0.44 5.90 6.74 -213.32 -1.44 4.47 16 39 H 0.44 2.91 6.73 -213.31 -1.44 1.48 16 40 H 0.18 0.16 8.06 -2.91 -0.02 0.13 16 41 H 0.17 0.77 8.06 -2.91 -0.02 0.74 16 42 H 0.16 1.93 6.22 -2.91 -0.02 1.91 16 Total: -1.00 -71.33 356.05 0.13 -71.20 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -2.22 Total: 10.30 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: 6.07 Total: -5.95 kcal Atomic # 7 Polarization: -94.34 SS G_CDS: -5.46 Total: -99.80 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.07 Total: -20.01 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 1.88 Total: 45.04 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -0.08 Total: -0.79 kcal Total: -71.33 0.13 -71.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807591793.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.464 kcal (2) G-P(sol) polarization free energy of solvation -71.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds