Wall clock time and date at job start Tue Mar 31 2020 17:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42911 * 109.46753 * 2 1 4 4 C 1.35726 * 116.99445 * 180.02562 * 3 2 1 5 5 C 1.41858 * 126.77650 * 180.02562 * 4 3 2 6 6 C 1.36729 * 103.80428 * 179.97438 * 5 4 3 7 7 C 1.47406 * 126.88683 * 179.97438 * 6 5 4 8 8 O 1.21498 * 120.00026 * 359.97438 * 7 6 5 9 9 O 1.34777 * 119.99961 * 179.97438 * 7 6 5 10 10 C 1.45198 * 117.00172 * 179.97438 * 9 7 6 11 11 C 1.50703 * 109.47256 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00119 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99770 * 179.97438 * 11 10 9 14 14 C 1.46495 * 120.00299 * 0.02562 * 13 11 10 15 15 C 1.53004 * 109.47229 * 89.99839 * 14 13 11 16 16 C 1.46501 * 119.99712 * 179.97438 * 13 11 10 17 17 C 1.50702 * 109.46970 * 90.00372 * 16 13 11 18 18 H 1.08003 * 119.99718 * 359.97438 * 17 16 13 19 19 C 1.37875 * 120.00035 * 179.97438 * 17 16 13 20 20 N 1.31513 * 120.00249 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99954 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47508 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47104 * 120.00552 * 21 19 17 24 24 H 1.48503 * 109.47241 * 240.00289 * 21 19 17 25 25 O 1.34685 * 106.22580 * 0.23993 * 6 5 4 26 26 N 1.20874 * 111.62669 * 359.56278 * 25 6 5 27 27 H 1.09003 * 109.46490 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47246 * 299.99677 * 1 2 3 29 29 H 1.08991 * 109.47636 * 60.00195 * 1 2 3 30 30 H 1.08999 * 109.47246 * 240.00323 * 2 1 3 31 31 H 1.09000 * 109.47484 * 119.99531 * 2 1 3 32 32 H 1.08003 * 128.09930 * 359.95706 * 5 4 3 33 33 H 1.08998 * 109.47176 * 300.00208 * 10 9 7 34 34 H 1.08994 * 109.46872 * 60.00175 * 10 9 7 35 35 H 1.08998 * 109.47131 * 209.99973 * 14 13 11 36 36 H 1.09001 * 109.46942 * 329.99919 * 14 13 11 37 37 H 1.08998 * 109.47174 * 300.00108 * 15 14 13 38 38 H 1.09001 * 109.47093 * 60.00173 * 15 14 13 39 39 H 1.08997 * 109.46861 * 180.02562 * 15 14 13 40 40 H 1.08999 * 109.47028 * 209.99712 * 16 13 11 41 41 H 1.08998 * 109.47424 * 330.00608 * 16 13 11 42 42 H 0.97001 * 120.00188 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3518 1.5252 -0.0005 5 6 4.0450 2.7629 -0.0001 6 6 5.3629 2.3988 -0.0004 7 6 6.5297 3.2995 -0.0007 8 8 6.3676 4.5037 -0.0012 9 8 7.7764 2.7874 -0.0004 10 6 8.8777 3.7336 -0.0013 11 6 10.1847 2.9832 -0.0015 12 8 10.1876 1.7704 -0.0004 13 7 11.3502 3.6600 -0.0028 14 6 11.3467 5.1249 -0.0035 15 6 11.3466 5.6357 1.4388 16 6 12.6207 2.9305 -0.0023 17 6 13.0558 2.6787 -1.4230 18 1 12.4466 3.0268 -2.2441 19 6 14.2315 2.0039 -1.6746 20 7 14.9731 1.5796 -0.6749 21 14 14.7704 1.6912 -3.4356 22 1 13.7682 2.2647 -4.3694 23 1 16.0892 2.3321 -3.6709 24 1 14.8827 0.2285 -3.6666 25 8 5.3812 1.0521 -0.0063 26 7 4.2638 0.5913 -0.0009 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 3.6290 3.7596 0.0000 33 1 8.8184 4.3594 -0.8917 34 1 8.8186 4.3608 0.8882 35 1 12.2354 5.4901 -0.5182 36 1 10.4554 5.4858 -0.5168 37 1 10.4580 5.2704 1.9535 38 1 12.2379 5.2747 1.9521 39 1 11.3436 6.7256 1.4382 40 1 13.3791 3.5221 0.5104 41 1 12.4929 1.9784 0.5126 42 1 15.8001 1.1045 -0.8519 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837921516.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:46 Heat of formation + Delta-G solvation = -80.523932 kcal Electronic energy + Delta-G solvation = -26967.044566 eV Core-core repulsion = 22724.461958 eV Total energy + Delta-G solvation = -4242.582608 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.140 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.36036 -40.69962 -39.41298 -39.01534 -36.73145 -35.35847 -33.93063 -32.87260 -32.50085 -31.58488 -30.21472 -29.32394 -26.78131 -25.20837 -23.86760 -23.61422 -23.10176 -22.52309 -21.26017 -19.58089 -18.70693 -18.35962 -17.32694 -17.27804 -16.85196 -16.59732 -16.40673 -16.25859 -15.79674 -15.41811 -14.93294 -14.60583 -14.33310 -14.01866 -13.58411 -13.54509 -13.43296 -13.19825 -13.04853 -12.74822 -12.37360 -12.21655 -12.09138 -11.77359 -11.66059 -11.60766 -11.27320 -11.17922 -11.01758 -10.91537 -10.70678 -10.57939 -10.32795 -10.16356 -9.71873 -9.66220 -9.06147 -8.46326 -7.78975 -6.07256 -4.12095 0.21656 1.67253 1.76109 2.16494 2.32351 2.81619 3.19351 3.29153 3.37288 3.41186 3.63873 3.83780 4.25690 4.42212 4.43493 4.45394 4.54846 4.66295 4.76286 4.80254 5.01097 5.09860 5.10405 5.24824 5.27600 5.27605 5.30683 5.52138 5.54736 5.69257 5.88038 5.99036 6.16482 6.41773 6.52261 6.94410 7.18781 7.37279 7.45245 7.67884 7.88727 8.18320 8.25142 8.80996 8.96287 9.53103 11.00934 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.018046 B = 0.002319 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.260736 B =12070.500991 C =13110.403026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.280 6.280 4 C 0.204 3.796 5 C -0.143 4.143 6 C -0.034 4.034 7 C 0.557 3.443 8 O -0.476 6.476 9 O -0.310 6.310 10 C 0.049 3.951 11 C 0.506 3.494 12 O -0.514 6.514 13 N -0.591 5.591 14 C 0.101 3.899 15 C -0.171 4.171 16 C 0.247 3.753 17 C -0.528 4.528 18 H 0.059 0.941 19 C 0.061 3.939 20 N -0.894 5.894 21 Si 0.899 3.101 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.282 1.282 25 O 0.145 5.855 26 N -0.381 5.381 27 H 0.083 0.917 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.195 0.805 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.088 0.912 36 H 0.065 0.935 37 H 0.050 0.950 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.037 0.963 41 H 0.046 0.954 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.185 5.177 3.313 24.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.187 6.187 4 C 0.008 3.992 5 C -0.165 4.165 6 C -0.099 4.099 7 C 0.398 3.602 8 O -0.364 6.364 9 O -0.224 6.224 10 C -0.028 4.028 11 C 0.290 3.710 12 O -0.390 6.390 13 N -0.324 5.324 14 C -0.023 4.023 15 C -0.229 4.229 16 C 0.129 3.871 17 C -0.567 4.567 18 H 0.077 0.923 19 C -0.141 4.141 20 N -0.532 5.532 21 Si 0.727 3.273 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.208 1.208 25 O 0.074 5.926 26 N -0.101 5.101 27 H 0.102 0.898 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.213 0.787 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.107 0.893 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.054 0.946 41 H 0.064 0.936 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -24.316 3.656 3.356 24.818 hybrid contribution 0.251 0.588 -0.967 1.159 sum -24.065 4.243 2.389 24.553 Atomic orbital electron populations 1.21800 0.91967 1.03365 1.03718 1.22897 0.96029 0.80246 1.02753 1.86219 1.12601 1.30597 1.89284 1.21741 0.86119 0.90139 1.01231 1.22145 0.89343 0.99655 1.05343 1.22548 0.93682 0.84638 1.09049 1.19029 0.82191 0.85214 0.73811 1.90945 1.86245 1.13753 1.45410 1.86693 1.13399 1.39778 1.82500 1.23176 0.83914 0.90859 1.04859 1.19617 0.84180 0.88135 0.79053 1.90747 1.86600 1.13225 1.48392 1.48208 1.07061 1.05980 1.71201 1.21527 1.03108 0.81061 0.96632 1.22240 1.02474 1.00730 0.97487 1.19354 0.77409 0.92634 0.97709 1.21460 1.06193 1.36811 0.92231 0.92287 1.24936 0.96383 0.95290 0.97506 1.69937 1.14226 1.38399 1.30686 0.86429 0.78281 0.78134 0.84488 1.19782 1.20985 1.20835 1.85152 1.22311 1.17904 1.67199 1.74090 0.90451 1.22152 1.23424 0.89807 0.91291 0.91278 0.91299 0.91311 0.78749 0.87965 0.88055 0.89338 0.91700 0.93104 0.91747 0.91860 0.94550 0.93625 0.92709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 10.28 37.16 0.38 -0.35 16 2 C 0.06 0.41 6.38 37.16 0.24 0.65 16 3 O -0.28 -2.75 10.21 -18.88 -0.19 -2.94 16 4 C 0.20 2.27 8.00 -16.72 -0.13 2.13 16 5 C -0.14 -1.44 10.97 -38.74 -0.43 -1.87 16 6 C -0.03 -0.42 7.36 -36.40 -0.27 -0.68 16 7 C 0.56 7.42 7.96 34.46 0.27 7.69 16 8 O -0.48 -6.50 16.70 -19.26 -0.32 -6.82 16 9 O -0.31 -4.90 9.77 -47.71 -0.47 -5.37 16 10 C 0.05 0.73 4.51 36.01 0.16 0.89 16 11 C 0.51 10.28 7.75 -10.98 -0.09 10.19 16 12 O -0.51 -12.96 16.08 -14.10 -0.23 -13.19 16 13 N -0.59 -11.90 2.46 -175.06 -0.43 -12.33 16 14 C 0.10 1.49 5.93 -4.04 -0.02 1.47 16 15 C -0.17 -2.12 10.24 37.16 0.38 -1.73 16 16 C 0.25 6.25 5.16 -5.19 -0.03 6.23 16 17 C -0.53 -14.64 9.39 -34.44 -0.32 -14.97 16 18 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 21 Si 0.90 21.66 29.54 -169.99 -5.02 16.63 16 22 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 25 O 0.14 1.94 11.22 15.43 0.17 2.11 16 26 N -0.38 -4.83 11.50 30.47 0.35 -4.48 16 27 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.20 1.44 8.06 -52.48 -0.42 1.02 16 33 H 0.10 1.32 7.40 -51.93 -0.38 0.93 16 34 H 0.10 1.25 7.18 -51.93 -0.37 0.88 16 35 H 0.09 1.36 8.07 -51.93 -0.42 0.94 16 36 H 0.06 0.78 6.44 -51.93 -0.33 0.45 16 37 H 0.05 0.59 7.22 -51.93 -0.38 0.22 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 41 H 0.05 1.31 7.42 -51.93 -0.39 0.92 16 42 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 374.44 15.07 5.64 5.64 Total: -1.00 -33.87 374.44 -5.32 -39.19 By element: Atomic # 1 Polarization: 1.34 SS G_CDS: -5.62 Total: -4.28 kcal Atomic # 6 Polarization: 11.22 SS G_CDS: 0.05 Total: 11.28 kcal Atomic # 7 Polarization: -42.91 SS G_CDS: 0.66 Total: -42.25 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -1.03 Total: -26.21 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.87 -5.32 -39.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837921516.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.331 kcal (2) G-P(sol) polarization free energy of solvation -33.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds