Wall clock time and date at job start Tue Mar 31 2020 17:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42911 * 109.46753 * 2 1 4 4 C 1.35726 * 116.99445 * 180.02562 * 3 2 1 5 5 C 1.41858 * 126.77650 * 180.02562 * 4 3 2 6 6 C 1.36729 * 103.80428 * 179.97438 * 5 4 3 7 7 C 1.47406 * 126.88683 * 179.97438 * 6 5 4 8 8 O 1.21498 * 120.00026 * 359.97438 * 7 6 5 9 9 O 1.34777 * 119.99961 * 179.97438 * 7 6 5 10 10 C 1.45198 * 117.00172 * 179.97438 * 9 7 6 11 11 C 1.50703 * 109.47256 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00119 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99770 * 179.97438 * 11 10 9 14 14 C 1.46495 * 120.00299 * 0.02562 * 13 11 10 15 15 C 1.53004 * 109.47229 * 89.99839 * 14 13 11 16 16 C 1.46501 * 119.99712 * 179.97438 * 13 11 10 17 17 C 1.50702 * 109.46970 * 90.00372 * 16 13 11 18 18 H 1.08003 * 119.99718 * 359.97438 * 17 16 13 19 19 C 1.37875 * 120.00035 * 179.97438 * 17 16 13 20 20 N 1.31513 * 120.00249 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99954 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47508 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47104 * 120.00552 * 21 19 17 24 24 H 1.48503 * 109.47241 * 240.00289 * 21 19 17 25 25 O 1.34685 * 106.22580 * 0.23993 * 6 5 4 26 26 N 1.20874 * 111.62669 * 359.56278 * 25 6 5 27 27 H 1.09003 * 109.46490 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47246 * 299.99677 * 1 2 3 29 29 H 1.08991 * 109.47636 * 60.00195 * 1 2 3 30 30 H 1.08999 * 109.47246 * 240.00323 * 2 1 3 31 31 H 1.09000 * 109.47484 * 119.99531 * 2 1 3 32 32 H 1.08003 * 128.09930 * 359.95706 * 5 4 3 33 33 H 1.08998 * 109.47176 * 300.00208 * 10 9 7 34 34 H 1.08994 * 109.46872 * 60.00175 * 10 9 7 35 35 H 1.08998 * 109.47131 * 209.99973 * 14 13 11 36 36 H 1.09001 * 109.46942 * 329.99919 * 14 13 11 37 37 H 1.08998 * 109.47174 * 300.00108 * 15 14 13 38 38 H 1.09001 * 109.47093 * 60.00173 * 15 14 13 39 39 H 1.08997 * 109.46861 * 180.02562 * 15 14 13 40 40 H 1.08999 * 109.47028 * 209.99712 * 16 13 11 41 41 H 1.08998 * 109.47424 * 330.00608 * 16 13 11 42 42 H 0.97001 * 120.00188 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3518 1.5252 -0.0005 5 6 4.0450 2.7629 -0.0001 6 6 5.3629 2.3988 -0.0004 7 6 6.5297 3.2995 -0.0007 8 8 6.3676 4.5037 -0.0012 9 8 7.7764 2.7874 -0.0004 10 6 8.8777 3.7336 -0.0013 11 6 10.1847 2.9832 -0.0015 12 8 10.1876 1.7704 -0.0004 13 7 11.3502 3.6600 -0.0028 14 6 11.3467 5.1249 -0.0035 15 6 11.3466 5.6357 1.4388 16 6 12.6207 2.9305 -0.0023 17 6 13.0558 2.6787 -1.4230 18 1 12.4466 3.0268 -2.2441 19 6 14.2315 2.0039 -1.6746 20 7 14.9731 1.5796 -0.6749 21 14 14.7704 1.6912 -3.4356 22 1 13.7682 2.2647 -4.3694 23 1 16.0892 2.3321 -3.6709 24 1 14.8827 0.2285 -3.6666 25 8 5.3812 1.0521 -0.0063 26 7 4.2638 0.5913 -0.0009 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 3.6290 3.7596 0.0000 33 1 8.8184 4.3594 -0.8917 34 1 8.8186 4.3608 0.8882 35 1 12.2354 5.4901 -0.5182 36 1 10.4554 5.4858 -0.5168 37 1 10.4580 5.2704 1.9535 38 1 12.2379 5.2747 1.9521 39 1 11.3436 6.7256 1.4382 40 1 13.3791 3.5221 0.5104 41 1 12.4929 1.9784 0.5126 42 1 15.8001 1.1045 -0.8519 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837921516.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:18 Heat of formation + Delta-G solvation = -103.400218 kcal Electronic energy + Delta-G solvation = -26968.036556 eV Core-core repulsion = 22724.461958 eV Total energy + Delta-G solvation = -4243.574599 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.140 amu Computer time = 27.10 seconds Orbital eigenvalues (eV) -46.25638 -41.84489 -40.55477 -40.15115 -37.88800 -36.97355 -34.92276 -34.74098 -33.39320 -32.18788 -31.71136 -30.69092 -28.52695 -26.25281 -24.88040 -24.64945 -24.33383 -23.91696 -22.12640 -20.61087 -20.18292 -19.27245 -18.64081 -18.47681 -18.08035 -17.94252 -17.80298 -17.17665 -16.99723 -16.78243 -16.24370 -15.97979 -15.64636 -14.96197 -14.76972 -14.72210 -14.55206 -14.12370 -14.02442 -13.96221 -13.58204 -13.55273 -13.26143 -13.05337 -13.03611 -12.68314 -12.51912 -12.49040 -12.23559 -12.16809 -12.16476 -12.08292 -11.80285 -11.67726 -11.20663 -10.72726 -10.63902 -10.55386 -9.51830 -8.22064 -6.36072 -0.71557 0.73268 0.80387 1.34947 1.37328 1.37693 1.40379 1.51522 1.64516 1.82493 2.34659 2.46850 2.84846 3.08271 3.41101 3.42596 3.52124 3.77020 3.91350 3.92189 3.99075 4.03695 4.19992 4.26085 4.42727 4.45856 4.64226 4.77599 4.79636 4.85734 4.97124 4.99570 5.07084 5.15455 5.23116 5.41601 5.56565 5.78241 5.81386 6.05825 6.12923 6.63478 6.74052 6.77064 7.23641 7.38595 8.85451 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.018046 B = 0.002319 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.260736 B =12070.500991 C =13110.403026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.048 3.952 3 O -0.282 6.282 4 C 0.205 3.795 5 C -0.118 4.118 6 C -0.049 4.049 7 C 0.566 3.434 8 O -0.476 6.476 9 O -0.335 6.335 10 C 0.061 3.939 11 C 0.497 3.503 12 O -0.578 6.578 13 N -0.594 5.594 14 C 0.093 3.907 15 C -0.164 4.164 16 C 0.262 3.738 17 C -0.542 4.542 18 H 0.056 0.944 19 C 0.007 3.993 20 N -0.928 5.928 21 Si 0.967 3.033 22 H -0.266 1.266 23 H -0.269 1.269 24 H -0.284 1.284 25 O 0.119 5.881 26 N -0.396 5.396 27 H 0.102 0.898 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.225 0.775 33 H 0.132 0.868 34 H 0.136 0.864 35 H 0.080 0.920 36 H 0.104 0.896 37 H 0.060 0.940 38 H 0.041 0.959 39 H 0.098 0.902 40 H 0.030 0.970 41 H -0.001 1.001 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.287 7.354 2.466 27.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.027 4.027 3 O -0.189 6.189 4 C 0.008 3.992 5 C -0.139 4.139 6 C -0.113 4.113 7 C 0.408 3.592 8 O -0.363 6.363 9 O -0.250 6.250 10 C -0.015 4.015 11 C 0.284 3.716 12 O -0.458 6.458 13 N -0.326 5.326 14 C -0.029 4.029 15 C -0.222 4.222 16 C 0.141 3.859 17 C -0.581 4.581 18 H 0.074 0.926 19 C -0.192 4.192 20 N -0.567 5.567 21 Si 0.792 3.208 22 H -0.190 1.190 23 H -0.195 1.195 24 H -0.210 1.210 25 O 0.051 5.949 26 N -0.120 5.120 27 H 0.120 0.880 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.242 0.758 33 H 0.149 0.851 34 H 0.153 0.847 35 H 0.099 0.901 36 H 0.122 0.878 37 H 0.079 0.921 38 H 0.060 0.940 39 H 0.116 0.884 40 H 0.048 0.952 41 H 0.017 0.983 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -26.426 5.909 2.516 27.195 hybrid contribution 0.811 -0.092 -0.659 1.049 sum -25.614 5.817 1.857 26.332 Atomic orbital electron populations 1.21824 0.89767 1.04685 1.03958 1.23150 0.97728 0.79237 1.02580 1.86248 1.11700 1.31995 1.88987 1.21977 0.86593 0.90288 1.00333 1.22509 0.88176 1.00477 1.02743 1.22527 0.93974 0.84277 1.10512 1.18981 0.81526 0.85332 0.73395 1.90937 1.86127 1.13616 1.45634 1.86676 1.14446 1.40801 1.83093 1.23085 0.80862 0.89769 1.07794 1.20547 0.85915 0.87738 0.77378 1.90712 1.87726 1.16174 1.51167 1.48193 1.05547 1.08219 1.70667 1.21905 1.04651 0.77498 0.98867 1.22190 1.01905 1.02810 0.95334 1.18792 0.79818 0.91184 0.96104 1.21751 1.06341 1.36893 0.93095 0.92564 1.25850 0.96532 0.94981 1.01875 1.70052 1.14721 1.39058 1.32910 0.85372 0.78411 0.77780 0.79267 1.19024 1.19458 1.20981 1.85130 1.22745 1.18673 1.68341 1.74081 0.90619 1.22962 1.24377 0.87950 0.90993 0.91037 0.91551 0.91483 0.75795 0.85058 0.84668 0.90124 0.87831 0.92090 0.93961 0.88364 0.95184 0.98282 0.92424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 10.28 71.98 0.74 -0.40 16 2 C 0.05 0.66 6.38 71.98 0.46 1.12 16 3 O -0.28 -5.13 10.21 -90.48 -0.92 -6.05 16 4 C 0.21 4.30 8.00 85.78 0.69 4.98 16 5 C -0.12 -2.12 10.97 22.81 0.25 -1.87 16 6 C -0.05 -1.13 7.36 24.33 0.18 -0.95 16 7 C 0.57 14.14 7.96 70.24 0.56 14.70 16 8 O -0.48 -11.55 16.70 19.84 0.33 -11.22 16 9 O -0.34 -10.34 9.77 -50.17 -0.49 -10.83 16 10 C 0.06 1.70 4.51 71.24 0.32 2.02 16 11 C 0.50 20.37 7.75 87.66 0.68 21.05 16 12 O -0.58 -30.54 16.08 15.77 0.25 -30.28 16 13 N -0.59 -24.12 2.46 -826.16 -2.03 -26.15 16 14 C 0.09 2.57 5.93 86.38 0.51 3.08 16 15 C -0.16 -3.68 10.24 71.98 0.74 -2.94 16 16 C 0.26 13.83 5.16 85.63 0.44 14.28 16 17 C -0.54 -30.82 9.39 25.60 0.24 -30.58 16 18 H 0.06 3.15 7.81 -2.91 -0.02 3.13 16 19 C 0.01 0.38 5.46 84.65 0.46 0.84 16 20 N -0.93 -55.83 13.29 21.45 0.28 -55.54 16 21 Si 0.97 44.79 29.54 68.60 2.03 46.82 16 22 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 23 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 24 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 25 O 0.12 3.21 11.22 65.41 0.73 3.94 16 26 N -0.40 -10.00 11.50 -171.99 -1.98 -11.98 16 27 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.07 0.94 8.14 -2.39 -0.02 0.93 16 31 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.23 2.52 8.06 -2.91 -0.02 2.50 16 33 H 0.13 2.91 7.40 -2.39 -0.02 2.90 16 34 H 0.14 2.86 7.18 -2.39 -0.02 2.84 16 35 H 0.08 2.38 8.07 -2.39 -0.02 2.36 16 36 H 0.10 2.09 6.44 -2.39 -0.02 2.07 16 37 H 0.06 1.24 7.22 -2.39 -0.02 1.23 16 38 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.03 1.60 8.07 -2.39 -0.02 1.58 16 41 H 0.00 -0.06 7.42 -2.39 -0.02 -0.08 16 42 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -77.47 374.44 5.52 -71.95 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: 1.04 Total: 4.02 kcal Atomic # 6 Polarization: 19.05 SS G_CDS: 6.27 Total: 25.32 kcal Atomic # 7 Polarization: -89.94 SS G_CDS: -3.72 Total: -93.66 kcal Atomic # 8 Polarization: -54.34 SS G_CDS: -0.09 Total: -54.44 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -77.47 5.52 -71.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837921516.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.454 kcal (2) G-P(sol) polarization free energy of solvation -77.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 27.10 seconds