Wall clock time and date at job start Tue Mar 31 2020 16:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.46822 * 2 1 4 4 C 1.50701 * 109.47799 * 120.00156 * 2 1 3 5 5 C 1.38224 * 120.01055 * 59.99645 * 4 2 1 6 6 C 1.38219 * 120.02221 * 179.97438 * 5 4 2 7 7 C 1.38265 * 120.05383 * 0.02807 * 6 5 4 8 8 C 1.38170 * 120.02442 * 359.97438 * 7 6 5 9 9 C 1.38432 * 120.01322 * 239.72360 * 4 2 1 10 10 F 1.35099 * 120.02854 * 0.02562 * 9 4 2 11 11 C 1.53001 * 109.46901 * 240.00268 * 2 1 3 12 12 H 1.08999 * 109.47164 * 299.99522 * 11 2 1 13 13 O 1.42903 * 109.47171 * 179.97438 * 11 2 1 14 14 C 1.50707 * 109.47316 * 59.99941 * 11 2 1 15 15 O 1.20823 * 119.99815 * 114.99650 * 14 11 2 16 16 O 1.34232 * 119.99215 * 294.99910 * 14 11 2 17 17 C 1.45200 * 116.99096 * 179.97438 * 16 14 11 18 18 C 1.53004 * 109.46734 * 179.97438 * 17 16 14 19 19 O 1.42903 * 109.47197 * 64.99975 * 18 17 16 20 20 C 1.42894 * 113.99968 * 180.02562 * 19 18 17 21 21 C 1.50696 * 109.47416 * 179.97438 * 20 19 18 22 22 H 1.08004 * 119.99458 * 0.02562 * 21 20 19 23 23 C 1.37871 * 120.00502 * 179.97438 * 21 20 19 24 24 N 1.31517 * 120.00023 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00155 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47118 * 60.00442 * 25 23 21 27 27 H 1.48498 * 109.47302 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47465 * 300.00494 * 25 23 21 29 29 H 1.09009 * 109.46870 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46908 * 299.99495 * 1 2 3 31 31 H 1.08997 * 109.47655 * 60.00037 * 1 2 3 32 32 H 1.08001 * 119.98467 * 359.96404 * 5 4 2 33 33 H 1.08004 * 119.97321 * 180.02562 * 6 5 4 34 34 H 1.08003 * 119.98749 * 179.97438 * 7 6 5 35 35 H 1.08009 * 120.01360 * 179.97438 * 8 7 6 36 36 H 0.96700 * 114.00311 * 300.00378 * 13 11 2 37 37 H 1.08995 * 109.47524 * 299.99566 * 17 16 14 38 38 H 1.09002 * 109.47518 * 60.00257 * 17 16 14 39 39 H 1.08997 * 109.47073 * 185.00261 * 18 17 16 40 40 H 1.09000 * 109.47147 * 304.99850 * 18 17 16 41 41 H 1.09001 * 109.47337 * 299.99937 * 20 19 18 42 42 H 1.09001 * 109.47411 * 59.99741 * 20 19 18 43 43 H 0.97004 * 120.00133 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 1.2304 5 6 1.6987 -2.0338 1.4494 6 6 2.1599 -2.6857 2.5775 7 6 2.9550 -2.0151 3.4885 8 6 3.2898 -0.6922 3.2716 9 6 2.8331 -0.0396 2.1388 10 9 3.1641 1.2524 1.9233 11 6 2.0399 -0.7212 -1.2493 12 1 1.6766 -1.7489 -1.2493 13 8 3.4690 -0.7207 -1.2497 14 6 1.5376 -0.0107 -2.4798 15 8 2.3190 0.5268 -3.2283 16 8 0.2220 0.0248 -2.7440 17 6 -0.1900 0.7272 -3.9461 18 6 -1.7128 0.6608 -4.0790 19 8 -2.3169 1.3745 -2.9983 20 6 -3.7455 1.3736 -3.0277 21 6 -4.2727 2.1499 -1.8485 22 1 -3.5854 2.5994 -1.1471 23 6 -5.6324 2.2873 -1.6657 24 7 -6.4693 1.7404 -2.5202 25 14 -6.2858 3.2489 -0.2037 26 1 -5.7896 4.6471 -0.2691 27 1 -7.7705 3.2481 -0.2343 28 1 -5.8168 2.6157 1.0550 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.0772 -2.5584 0.7388 33 1 1.8990 -3.7199 2.7476 34 1 3.3144 -2.5254 4.3698 35 1 3.9106 -0.1683 3.9836 36 1 3.8620 0.1628 -1.2498 37 1 0.1245 1.7690 -3.8841 38 1 0.2709 0.2597 -4.8162 39 1 -2.0150 1.1100 -5.0250 40 1 -2.0348 -0.3802 -4.0519 41 1 -4.0902 1.8374 -3.9519 42 1 -4.1094 0.3473 -2.9785 43 1 -7.4259 1.8367 -2.3914 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870075027.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:33 Heat of formation + Delta-G solvation = -211.486913 kcal Electronic energy + Delta-G solvation = -27858.278111 eV Core-core repulsion = 23590.096560 eV Total energy + Delta-G solvation = -4268.181551 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.08220 -40.86678 -39.45674 -37.69715 -36.81772 -36.09071 -34.31668 -32.80547 -30.80000 -30.53981 -29.67207 -27.32224 -26.78683 -24.37390 -23.04302 -22.53680 -22.24230 -21.31569 -20.61945 -18.47742 -17.77813 -17.50197 -16.78483 -16.72688 -16.43241 -15.96349 -15.80541 -15.58278 -15.33477 -14.74535 -14.64925 -14.40091 -14.36523 -13.89304 -13.80781 -13.36697 -13.07245 -12.99066 -12.71686 -12.43620 -12.21046 -12.08062 -11.99971 -11.97714 -11.49652 -11.30806 -11.12875 -10.92177 -10.89315 -10.81788 -10.68337 -10.41816 -10.17060 -10.05684 -9.18269 -9.17003 -8.91694 -8.85095 -8.25517 -6.15195 -4.17162 0.91704 0.96951 2.06865 2.58051 3.29650 3.32692 3.34363 3.36280 3.89406 4.02261 4.28601 4.32511 4.35249 4.57422 4.62374 4.68135 4.75856 4.80014 4.99544 5.07640 5.16137 5.21546 5.26865 5.35955 5.39263 5.62195 5.79328 5.80771 5.83199 5.86483 5.94690 5.99639 6.04358 6.13285 6.17950 6.44625 6.57563 6.66455 7.01067 7.12634 7.35567 7.69235 7.74215 8.08579 8.47427 8.94818 9.47818 10.96249 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.011120 B = 0.003285 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2517.487382 B = 8521.338918 C =10181.043075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.080 4.080 3 H 0.091 0.909 4 C -0.095 4.095 5 C -0.083 4.083 6 C -0.126 4.126 7 C -0.096 4.096 8 C -0.153 4.153 9 C 0.103 3.897 10 F -0.138 7.138 11 C 0.129 3.871 12 H 0.138 0.862 13 O -0.529 6.529 14 C 0.433 3.567 15 O -0.507 6.507 16 O -0.332 6.332 17 C 0.070 3.930 18 C 0.062 3.938 19 O -0.390 6.390 20 C 0.196 3.804 21 C -0.516 4.516 22 H 0.066 0.934 23 C 0.058 3.942 24 N -0.899 5.899 25 Si 0.907 3.093 26 H -0.275 1.275 27 H -0.286 1.286 28 H -0.274 1.274 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.097 0.903 32 H 0.134 0.866 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.133 0.867 36 H 0.385 0.615 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.063 0.937 40 H 0.051 0.949 41 H 0.005 0.995 42 H 0.007 0.993 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.018 -9.104 7.551 22.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.099 4.099 3 H 0.109 0.891 4 C -0.096 4.096 5 C -0.101 4.101 6 C -0.144 4.144 7 C -0.114 4.114 8 C -0.172 4.172 9 C 0.084 3.916 10 F -0.117 7.117 11 C 0.068 3.932 12 H 0.155 0.845 13 O -0.334 6.334 14 C 0.275 3.725 15 O -0.396 6.396 16 O -0.248 6.248 17 C -0.004 4.004 18 C -0.016 4.016 19 O -0.310 6.310 20 C 0.122 3.878 21 C -0.554 4.554 22 H 0.084 0.916 23 C -0.144 4.144 24 N -0.538 5.538 25 Si 0.735 3.265 26 H -0.200 1.200 27 H -0.211 1.211 28 H -0.200 1.200 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.115 0.885 32 H 0.152 0.848 33 H 0.147 0.853 34 H 0.148 0.852 35 H 0.151 0.849 36 H 0.234 0.766 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.023 0.977 42 H 0.025 0.975 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 19.045 -9.439 7.394 22.505 hybrid contribution -0.482 1.279 0.274 1.394 sum 18.563 -8.160 7.669 21.679 Atomic orbital electron populations 1.22046 0.90398 1.03695 1.05011 1.20749 0.99212 0.99587 0.90373 0.89102 1.19614 0.98676 0.95106 0.96172 1.20923 0.98579 0.92953 0.97622 1.21193 0.98326 1.00465 0.94465 1.20998 0.97510 0.93534 0.99400 1.21114 1.02855 0.96017 0.97181 1.17534 0.98842 0.79110 0.96164 1.91488 1.90881 1.34572 1.94753 1.21642 0.82226 1.01116 0.88233 0.84470 1.86629 1.16140 1.34570 1.96109 1.24635 0.81610 0.78416 0.87837 1.90663 1.57013 1.42978 1.48912 1.86679 1.24555 1.69252 1.44273 1.23273 0.95283 0.97250 0.84578 1.22315 0.89640 0.97290 0.92336 1.87901 1.23890 1.73681 1.45566 1.20220 0.73942 0.96348 0.97326 1.20991 0.91487 1.33335 1.09560 0.91560 1.24933 0.96444 0.95951 0.97057 1.69948 1.02903 1.44576 1.36338 0.86405 0.77484 0.80360 0.82300 1.20002 1.21132 1.19963 0.91748 0.91640 0.88475 0.84847 0.85257 0.85167 0.84860 0.76619 0.90435 0.90385 0.91959 0.93127 0.97680 0.97505 0.92550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 8.48 37.16 0.32 -1.69 16 2 C -0.08 -0.91 2.31 -91.77 -0.21 -1.13 16 3 H 0.09 1.09 7.13 -51.93 -0.37 0.72 16 4 C -0.09 -1.01 4.44 -104.55 -0.46 -1.48 16 5 C -0.08 -0.76 8.71 -39.59 -0.34 -1.10 16 6 C -0.13 -1.00 10.04 -39.58 -0.40 -1.40 16 7 C -0.10 -0.74 10.04 -39.60 -0.40 -1.14 16 8 C -0.15 -1.38 10.03 -39.52 -0.40 -1.78 16 9 C 0.10 1.13 7.25 -39.42 -0.29 0.84 16 10 F -0.14 -1.67 16.19 2.25 0.04 -1.63 16 11 C 0.13 1.45 2.91 -27.88 -0.08 1.37 16 12 H 0.14 1.32 7.39 -51.93 -0.38 0.93 16 13 O -0.53 -6.04 12.62 -55.15 -0.70 -6.74 16 14 C 0.43 6.07 7.13 36.01 0.26 6.33 16 15 O -0.51 -8.20 16.07 -25.46 -0.41 -8.61 16 16 O -0.33 -5.02 7.41 -42.03 -0.31 -5.33 16 17 C 0.07 1.04 5.84 37.16 0.22 1.26 16 18 C 0.06 1.07 6.33 37.16 0.24 1.31 16 19 O -0.39 -8.96 10.30 -38.80 -0.40 -9.36 16 20 C 0.20 5.18 5.69 36.00 0.20 5.38 16 21 C -0.52 -14.80 9.43 -34.44 -0.32 -15.12 16 22 H 0.07 1.89 7.81 -52.48 -0.41 1.48 16 23 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 24 N -0.90 -26.38 13.29 55.43 0.74 -25.64 16 25 Si 0.91 21.50 29.54 -169.99 -5.02 16.48 16 26 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 27 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 28 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 29 H 0.06 0.75 7.39 -51.92 -0.38 0.36 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.10 1.52 5.54 -51.93 -0.29 1.23 16 32 H 0.13 1.02 7.10 -52.49 -0.37 0.65 16 33 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 34 H 0.13 0.67 8.06 -52.48 -0.42 0.24 16 35 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 36 H 0.38 3.70 8.79 45.56 0.40 4.10 16 37 H 0.08 1.20 8.13 -51.93 -0.42 0.78 16 38 H 0.08 0.99 8.13 -51.93 -0.42 0.57 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 42 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 43 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 371.45 15.07 5.60 5.60 Total: -1.00 -33.04 371.45 -7.41 -40.45 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -5.17 Total: 1.60 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: -1.77 Total: -6.80 kcal Atomic # 7 Polarization: -26.38 SS G_CDS: 0.74 Total: -25.64 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -1.82 Total: -30.04 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.04 -7.41 -40.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870075027.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -171.041 kcal (2) G-P(sol) polarization free energy of solvation -33.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds