Wall clock time and date at job start Tue Mar 31 2020 15:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.58233 * 2 1 4 4 C 1.53194 * 109.58747 * 239.71622 * 2 1 3 5 5 C 1.53039 * 109.31137 * 294.70737 * 4 2 1 6 6 H 1.08996 * 109.46462 * 58.64094 * 5 4 2 7 7 N 1.46502 * 109.45963 * 178.61691 * 5 4 2 8 8 C 1.34775 * 119.99956 * 204.99966 * 7 5 4 9 9 O 1.21612 * 120.00273 * 359.97438 * 8 7 5 10 10 C 1.47386 * 120.00079 * 179.97438 * 8 7 5 11 11 C 1.38065 * 126.42001 * 0.18979 * 10 8 7 12 12 N 1.34235 * 107.43660 * 180.22194 * 11 10 8 13 13 C 1.46498 * 125.74031 * 179.78777 * 12 11 10 14 14 N 1.39936 * 108.52468 * 359.76861 * 12 11 10 15 15 C 1.30535 * 108.89044 * 359.97438 * 14 12 11 16 16 Cl 1.73595 * 126.00371 * 179.97438 * 15 14 12 17 17 C 1.53041 * 109.53886 * 298.63378 * 5 4 2 18 18 C 1.53197 * 109.31109 * 61.36266 * 17 5 4 19 19 N 1.46919 * 108.77946 * 305.36849 * 18 17 5 20 20 C 1.36938 * 120.63155 * 233.62796 * 19 18 17 21 21 H 1.08005 * 119.99626 * 151.80591 * 20 19 18 22 22 C 1.38807 * 120.00060 * 331.80535 * 20 19 18 23 23 N 1.31616 * 119.99794 * 343.09086 * 22 20 19 24 24 Si 1.86804 * 119.99900 * 163.08228 * 22 20 19 25 25 H 1.48501 * 109.46511 * 90.00519 * 24 22 20 26 26 H 1.48501 * 109.46990 * 210.00327 * 24 22 20 27 27 H 1.48500 * 109.47148 * 330.00525 * 24 22 20 28 28 H 1.09000 * 109.47142 * 180.28168 * 1 2 3 29 29 H 1.08994 * 109.47334 * 300.28469 * 1 2 3 30 30 H 1.09000 * 109.46947 * 60.28708 * 1 2 3 31 31 H 1.09000 * 109.49748 * 174.75355 * 4 2 1 32 32 H 1.09006 * 109.49756 * 54.65563 * 4 2 1 33 33 H 0.96999 * 119.99794 * 24.99425 * 7 5 4 34 34 H 1.08003 * 126.28815 * 359.97438 * 11 10 8 35 35 H 1.09003 * 109.47281 * 270.00073 * 13 12 11 36 36 H 1.09000 * 109.47300 * 30.00272 * 13 12 11 37 37 H 1.09004 * 109.47195 * 150.00444 * 13 12 11 38 38 H 1.08995 * 109.50282 * 181.32194 * 17 5 4 39 39 H 1.09004 * 109.49733 * 301.41611 * 17 5 4 40 40 H 1.09000 * 109.58212 * 185.57804 * 18 17 5 41 41 H 1.09000 * 109.69725 * 65.22596 * 18 17 5 42 42 H 0.97007 * 119.99948 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7278 -1.2463 5 6 1.6446 -2.2034 -1.1712 6 1 0.5599 -2.2830 -1.0989 7 7 2.1055 -2.8956 -2.3772 8 6 1.4800 -4.0149 -2.7924 9 8 0.5332 -4.4505 -2.1656 10 6 1.9433 -4.7111 -4.0060 11 6 3.0003 -4.3379 -4.8120 12 7 3.0821 -5.2336 -5.8085 13 6 4.0630 -5.2160 -6.8965 14 7 2.0732 -6.1872 -5.6331 15 6 1.3911 -5.8884 -4.5610 16 17 0.0383 -6.7760 -3.9318 17 6 2.2859 -2.8449 0.0614 18 6 1.7751 -2.1410 1.3226 19 7 2.0254 -0.6990 1.1936 20 6 2.7078 -0.0195 2.1672 21 1 3.2775 0.8618 1.9122 22 6 2.6672 -0.4635 3.4817 23 7 1.7350 -1.3116 3.8614 24 14 3.9356 0.1426 4.7119 25 1 3.4344 1.3739 5.3736 26 1 4.1741 -0.9071 5.7348 27 1 5.2066 0.4428 4.0050 28 1 -0.3633 -1.0277 0.0051 29 1 -0.3634 0.5182 0.8874 30 1 -0.3633 0.5094 -0.8926 31 1 3.1296 -0.6466 -1.2935 32 1 1.6056 -0.2774 -2.1371 33 1 2.8608 -2.5484 -2.8770 34 1 3.6411 -3.4803 -4.6695 35 1 3.6676 -4.6396 -7.7329 36 1 4.9877 -4.7584 -6.5448 37 1 4.2636 -6.2370 -7.2214 38 1 2.0204 -3.9013 0.1015 39 1 3.3696 -2.7437 0.0020 40 1 2.3022 -2.5268 2.1952 41 1 0.7053 -2.3176 1.4342 42 1 1.7068 -1.6221 4.7799 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947915894.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:09 Heat of formation + Delta-G solvation = 35.225056 kcal Electronic energy + Delta-G solvation = -25695.673117 eV Core-core repulsion = 21931.111677 eV Total energy + Delta-G solvation = -3764.561440 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.125 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.52206 -40.65816 -39.07491 -37.80508 -35.91939 -34.31094 -34.18655 -32.63809 -31.90869 -30.74672 -28.51541 -27.85796 -26.16255 -24.40648 -23.59352 -22.87325 -22.09861 -21.22229 -20.10216 -19.13638 -18.33590 -17.30468 -17.10257 -16.88530 -16.49069 -16.10751 -15.70665 -15.48957 -15.44580 -15.11656 -14.61643 -14.48573 -14.28341 -14.07122 -14.01365 -13.81795 -13.50966 -13.10453 -12.88574 -12.64609 -12.61328 -12.57402 -12.51403 -12.21884 -12.01013 -11.95736 -11.88243 -11.69498 -11.42452 -11.08134 -10.76124 -10.51831 -10.51066 -10.02990 -9.69664 -8.63408 -7.81543 -5.26767 0.40167 0.42763 0.76236 1.49428 1.51170 1.60416 1.74847 2.31064 2.42688 2.55304 3.34307 3.37646 3.67549 3.74485 3.92873 4.13837 4.17972 4.25818 4.37165 4.46761 4.47816 4.52596 4.58822 4.75855 4.76329 4.78716 4.83753 4.90570 5.00451 5.17228 5.22416 5.23552 5.39864 5.50698 5.57100 5.67189 5.72741 5.75560 5.82229 6.16726 6.45268 6.75236 7.20169 7.42886 7.92825 8.45106 9.24936 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.019761 B = 0.002872 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.568541 B = 9747.582793 C =10088.430827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.160 3.840 3 H 0.071 0.929 4 C -0.116 4.116 5 C 0.165 3.835 6 H 0.061 0.939 7 N -0.704 5.704 8 C 0.585 3.415 9 O -0.576 6.576 10 C -0.305 4.305 11 C 0.144 3.856 12 N -0.340 5.340 13 C 0.083 3.917 14 N -0.312 5.312 15 C 0.151 3.849 16 Cl 0.011 6.989 17 C -0.131 4.131 18 C 0.185 3.815 19 N -0.599 5.599 20 C -0.256 4.256 21 H 0.074 0.926 22 C -0.054 4.054 23 N -0.937 5.937 24 Si 0.965 3.035 25 H -0.287 1.287 26 H -0.299 1.299 27 H -0.265 1.265 28 H 0.032 0.968 29 H 0.026 0.974 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.413 0.587 34 H 0.246 0.754 35 H 0.102 0.898 36 H 0.134 0.866 37 H 0.096 0.904 38 H 0.040 0.960 39 H 0.063 0.937 40 H 0.050 0.950 41 H -0.013 1.013 42 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.996 -3.840 -25.549 27.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.053 3.947 3 H 0.089 0.911 4 C -0.155 4.155 5 C 0.060 3.940 6 H 0.079 0.921 7 N -0.355 5.355 8 C 0.373 3.627 9 O -0.456 6.456 10 C -0.321 4.321 11 C -0.009 4.009 12 N -0.119 5.119 13 C -0.055 4.055 14 N -0.137 5.137 15 C -0.041 4.041 16 Cl 0.039 6.961 17 C -0.172 4.172 18 C 0.059 3.941 19 N -0.322 5.322 20 C -0.386 4.386 21 H 0.091 0.909 22 C -0.249 4.249 23 N -0.584 5.584 24 Si 0.793 3.207 25 H -0.214 1.214 26 H -0.226 1.226 27 H -0.190 1.190 28 H 0.051 0.949 29 H 0.045 0.955 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.111 0.889 33 H 0.250 0.750 34 H 0.262 0.738 35 H 0.120 0.880 36 H 0.153 0.847 37 H 0.115 0.885 38 H 0.059 0.941 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.005 0.995 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 7.439 -5.101 -26.013 27.533 hybrid contribution -0.014 0.319 1.952 1.978 sum 7.424 -4.783 -24.062 25.631 Atomic orbital electron populations 1.22201 0.98502 1.00201 1.00463 1.20721 0.91965 0.95581 0.86435 0.91094 1.22125 1.02123 0.92571 0.98708 1.20675 0.98232 0.92057 0.83014 0.92116 1.45726 1.35323 1.26377 1.28120 1.17465 0.81963 0.80216 0.83052 1.90812 1.29986 1.66716 1.58053 1.20160 1.05922 1.02108 1.03907 1.23821 0.95716 0.95306 0.86081 1.48662 1.23707 1.17718 1.21789 1.22630 0.89550 1.06433 0.86869 1.77175 1.03526 1.14697 1.18333 1.22823 0.93287 0.93875 0.94141 1.98416 1.39246 1.74072 1.84343 1.22315 1.00389 0.98133 0.96314 1.20391 0.95295 0.83746 0.94696 1.44379 1.64053 1.03491 1.20235 1.19539 1.21498 1.10281 0.87266 0.90878 1.25824 0.99532 1.00788 0.98785 1.70216 1.33866 1.37614 1.16668 0.85319 0.79783 0.76850 0.78738 1.21385 1.22569 1.19009 0.94857 0.95504 0.90660 0.90315 0.88852 0.74994 0.73789 0.87988 0.84749 0.88509 0.94127 0.91872 0.93146 0.99455 0.94434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.81 9.03 71.98 0.65 -5.16 16 2 C 0.16 6.06 3.28 44.98 0.15 6.21 16 3 H 0.07 2.61 7.93 -2.39 -0.02 2.59 16 4 C -0.12 -3.28 5.02 30.67 0.15 -3.13 16 5 C 0.16 5.34 2.21 45.02 0.10 5.44 16 6 H 0.06 2.35 5.94 -2.39 -0.01 2.34 16 7 N -0.70 -17.17 5.07 -445.71 -2.26 -19.42 16 8 C 0.59 17.40 7.78 86.65 0.67 18.08 16 9 O -0.58 -22.92 15.38 -4.07 -0.06 -22.98 16 10 C -0.31 -7.19 6.13 -20.13 -0.12 -7.32 16 11 C 0.14 1.74 10.99 84.28 0.93 2.67 16 12 N -0.34 -4.44 3.98 -367.77 -1.46 -5.91 16 13 C 0.08 0.15 11.44 127.77 1.46 1.61 16 14 N -0.31 -7.17 12.50 -48.95 -0.61 -7.78 16 15 C 0.15 4.07 7.88 85.66 0.67 4.74 16 16 Cl 0.01 0.34 28.00 -2.72 -0.08 0.26 16 17 C -0.13 -5.20 5.65 30.67 0.17 -5.03 16 18 C 0.19 9.25 4.89 86.37 0.42 9.67 16 19 N -0.60 -29.08 2.70 -675.22 -1.83 -30.91 16 20 C -0.26 -13.65 9.58 84.03 0.81 -12.85 16 21 H 0.07 3.72 7.89 -2.91 -0.02 3.69 16 22 C -0.05 -3.02 4.92 84.86 0.42 -2.61 16 23 N -0.94 -56.58 11.20 21.65 0.24 -56.34 16 24 Si 0.96 44.67 29.59 68.60 2.03 46.70 16 25 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 26 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 27 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 28 H 0.03 1.35 5.75 -2.39 -0.01 1.34 16 29 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 33 H 0.41 6.06 7.52 -92.71 -0.70 5.36 16 34 H 0.25 0.06 7.46 -2.91 -0.02 0.04 16 35 H 0.10 -0.09 8.14 -2.39 -0.02 -0.11 16 36 H 0.13 -0.69 8.14 -2.39 -0.02 -0.71 16 37 H 0.10 0.24 8.14 -2.38 -0.02 0.22 16 38 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 40 H 0.05 2.87 6.06 -2.39 -0.01 2.86 16 41 H -0.01 -0.70 7.50 -2.39 -0.02 -0.72 16 42 H 0.25 14.55 8.31 -92.70 -0.77 13.78 16 Total: -1.00 -81.51 356.17 2.81 -78.70 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: 0.35 Total: 5.35 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: 6.48 Total: 12.33 kcal Atomic # 7 Polarization: -114.44 SS G_CDS: -5.92 Total: -120.36 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -0.06 Total: -22.98 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Atomic # 17 Polarization: 0.34 SS G_CDS: -0.08 Total: 0.26 kcal Total: -81.51 2.81 -78.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947915894.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.929 kcal (2) G-P(sol) polarization free energy of solvation -81.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds