Wall clock time and date at job start Tue Mar 31 2020 16:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.45340 * 2 1 4 4 C 1.53043 * 109.45977 * 119.96383 * 2 1 3 5 5 C 1.53191 * 109.31469 * 181.38836 * 4 2 1 6 6 N 1.46967 * 108.88520 * 305.43992 * 5 4 2 7 7 C 1.36939 * 120.65482 * 233.53005 * 6 5 4 8 8 H 1.07997 * 119.99691 * 152.55422 * 7 6 5 9 9 C 1.38808 * 119.99990 * 332.55740 * 7 6 5 10 10 N 1.31611 * 120.00187 * 159.40601 * 9 7 6 11 11 Si 1.86807 * 120.00080 * 339.40635 * 9 7 6 12 12 H 1.48502 * 109.46912 * 92.90377 * 11 9 7 13 13 H 1.48493 * 109.47014 * 212.90653 * 11 9 7 14 14 H 1.48501 * 109.46860 * 332.90463 * 11 9 7 15 15 C 1.46924 * 118.71435 * 53.35974 * 6 5 4 16 16 C 1.53045 * 109.46386 * 240.03027 * 2 1 3 17 17 H 1.09001 * 109.52263 * 298.58708 * 16 2 1 18 18 N 1.46501 * 109.49381 * 58.66415 * 16 2 1 19 19 C 1.34778 * 119.99884 * 204.84238 * 18 16 2 20 20 O 1.21577 * 120.00043 * 359.97438 * 19 18 16 21 21 C 1.47709 * 120.00112 * 180.02562 * 19 18 16 22 22 C 1.41511 * 126.51141 * 180.02562 * 21 19 18 23 23 C 1.35516 * 105.47910 * 179.97438 * 22 21 19 24 24 Cl 1.73602 * 126.39661 * 180.02562 * 23 22 21 25 25 N 1.35065 * 107.19836 * 359.97438 * 23 22 21 26 26 C 1.46498 * 124.87978 * 179.97438 * 25 23 22 27 27 N 1.28456 * 110.23292 * 359.72654 * 25 23 22 28 28 H 1.09002 * 109.46954 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46826 * 299.96989 * 1 2 3 30 30 H 1.09003 * 109.46954 * 59.97232 * 1 2 3 31 31 H 1.08998 * 109.49429 * 301.33910 * 4 2 1 32 32 H 1.08996 * 109.49685 * 61.43470 * 4 2 1 33 33 H 1.08999 * 109.58697 * 65.14633 * 5 4 2 34 34 H 1.08995 * 109.58828 * 185.43491 * 5 4 2 35 35 H 0.97006 * 120.00623 * 179.97438 * 10 9 7 36 36 H 1.09004 * 109.58697 * 186.78137 * 15 6 5 37 37 H 1.08999 * 109.58734 * 66.49448 * 15 6 5 38 38 H 0.96998 * 120.00009 * 24.84037 * 18 16 2 39 39 H 1.07992 * 127.25555 * 359.97438 * 22 21 19 40 40 H 1.09001 * 109.47030 * 90.00221 * 26 25 23 41 41 H 1.09001 * 109.46955 * 209.99929 * 26 25 23 42 42 H 1.09003 * 109.47554 * 329.99797 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7207 1.2501 5 6 3.5714 -0.6885 1.2644 6 7 4.0707 -1.2468 -0.0001 7 6 4.9810 -2.2699 -0.0004 8 1 5.0186 -2.9589 -0.8312 9 6 5.8552 -2.4214 1.0671 10 7 6.4346 -3.5831 1.2835 11 14 6.2092 -0.9763 2.1968 12 1 5.2797 -1.0137 3.3544 13 1 7.6096 -1.0601 2.6835 14 1 6.0196 0.2934 1.4505 15 6 3.5715 -0.6887 -1.2641 16 6 2.0400 -0.7208 -1.2500 17 1 1.6978 -1.7557 -1.2388 18 7 1.5257 -0.0488 -2.4459 19 6 1.4003 -0.7315 -3.6012 20 8 1.7143 -1.9050 -3.6510 21 6 0.8823 -0.0538 -4.8071 22 6 0.6946 -0.6343 -6.0840 23 6 0.2045 0.3593 -6.8644 24 17 -0.2209 0.2359 -8.5430 25 7 0.1079 1.4631 -6.0920 26 6 -0.3799 2.7662 -6.5503 27 7 0.5003 1.2044 -4.8965 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5134 0.8902 30 1 -0.3633 0.5143 -0.8898 31 1 1.6571 -0.2206 2.1398 32 1 1.6978 -1.7556 1.2384 33 1 3.9142 0.3410 1.3674 34 1 3.9416 -1.2823 2.1000 35 1 7.0458 -3.6889 2.0293 36 1 3.9418 -1.2846 -2.0983 37 1 3.9143 0.3406 -1.3698 38 1 1.2754 0.8875 -2.4063 39 1 0.8989 -1.6540 -6.3750 40 1 -1.4584 2.8228 -6.4028 41 1 0.1068 3.5574 -5.9800 42 1 -0.1511 2.8881 -7.6090 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967291037.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:06 Heat of formation + Delta-G solvation = 64.916874 kcal Electronic energy + Delta-G solvation = -25704.325121 eV Core-core repulsion = 21941.051215 eV Total energy + Delta-G solvation = -3763.273906 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.125 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -43.02633 -39.65222 -37.78788 -37.30900 -34.61869 -33.91774 -33.05670 -31.36845 -30.88443 -29.50930 -27.94909 -27.35716 -24.20982 -23.52628 -22.16913 -21.82421 -21.24496 -20.06691 -19.61525 -18.22012 -16.86862 -16.78568 -16.69567 -15.76010 -15.10695 -14.82049 -14.65825 -14.44933 -13.96015 -13.91773 -13.70428 -13.49041 -13.28677 -13.19344 -13.10713 -12.61015 -12.46442 -12.15432 -12.10091 -12.05054 -11.63932 -11.25972 -11.14508 -10.91603 -10.85596 -10.61133 -10.11467 -10.02769 -9.82003 -9.65822 -9.50664 -9.40110 -9.33802 -8.94685 -8.47078 -6.92202 -5.87987 -3.24330 1.09045 1.23717 1.68342 2.13590 3.28248 3.35425 3.43933 3.52045 3.55162 3.91768 4.54900 4.57795 4.58946 4.80226 4.85093 4.99671 5.02745 5.13110 5.19929 5.30245 5.36315 5.48564 5.79195 5.85807 5.88661 5.94808 5.98442 6.06528 6.09187 6.16340 6.31651 6.39056 6.53720 6.56850 6.65339 6.69592 6.81630 6.99481 7.35464 7.75217 8.02347 8.36243 8.41815 9.00769 9.78215 10.14086 11.28021 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.021634 B = 0.002845 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.964913 B = 9839.007056 C =10448.644602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 H 0.069 0.931 4 C -0.126 4.126 5 C 0.121 3.879 6 N -0.601 5.601 7 C -0.257 4.257 8 H 0.087 0.913 9 C 0.023 3.977 10 N -0.908 5.908 11 Si 0.882 3.118 12 H -0.289 1.289 13 H -0.304 1.304 14 H -0.271 1.271 15 C 0.144 3.856 16 C 0.132 3.868 17 H 0.093 0.907 18 N -0.706 5.706 19 C 0.600 3.400 20 O -0.519 6.519 21 C 0.002 3.998 22 C -0.149 4.149 23 C 0.046 3.954 24 Cl 0.002 6.998 25 N -0.276 5.276 26 C 0.081 3.919 27 N -0.242 5.242 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.025 0.975 34 H 0.075 0.925 35 H 0.262 0.738 36 H 0.069 0.931 37 H 0.023 0.977 38 H 0.401 0.599 39 H 0.175 0.825 40 H 0.090 0.910 41 H 0.104 0.896 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.872 14.960 -15.677 28.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.087 0.913 4 C -0.166 4.166 5 C -0.004 4.004 6 N -0.325 5.325 7 C -0.385 4.385 8 H 0.105 0.895 9 C -0.175 4.175 10 N -0.551 5.551 11 Si 0.713 3.287 12 H -0.216 1.216 13 H -0.232 1.232 14 H -0.196 1.196 15 C 0.016 3.984 16 C 0.026 3.974 17 H 0.111 0.889 18 N -0.357 5.357 19 C 0.382 3.618 20 O -0.393 6.393 21 C -0.158 4.158 22 C -0.178 4.178 23 C -0.104 4.104 24 Cl 0.029 6.971 25 N -0.067 5.067 26 C -0.059 4.059 27 N -0.079 5.079 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.043 0.957 34 H 0.093 0.907 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.041 0.959 38 H 0.235 0.765 39 H 0.192 0.808 40 H 0.108 0.892 41 H 0.122 0.878 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -17.681 15.064 -15.187 27.752 hybrid contribution 0.120 0.679 -0.049 0.691 sum -17.562 15.743 -15.235 28.078 Atomic orbital electron populations 1.21843 0.95493 1.01879 1.00971 1.21300 0.95105 0.99611 0.95055 0.91284 1.22071 0.98260 1.00710 0.95531 1.21411 0.91731 0.96984 0.90267 1.44290 1.48356 1.40780 0.99033 1.18962 1.09373 1.02702 1.07474 0.89510 1.25257 0.97467 0.96673 0.98149 1.69842 1.32574 1.22045 1.30663 0.86956 0.76215 0.84948 0.80583 1.21634 1.23247 1.19624 1.21225 0.90239 0.96910 0.89997 1.21784 0.96419 0.97397 0.81763 0.88862 1.45909 1.65276 1.14593 1.09873 1.16749 0.78065 0.85722 0.81229 1.90870 1.49452 1.15081 1.83851 1.21997 1.06961 0.90616 0.96235 1.21519 1.04624 1.00513 0.91178 1.21892 1.10845 0.89939 0.87744 1.98403 1.92016 1.97419 1.09215 1.45447 1.45801 1.09983 1.05477 1.22285 1.01405 0.80329 1.01886 1.73677 1.15461 1.17672 1.01056 0.92646 0.92881 0.93080 0.92205 0.91313 0.95693 0.90739 0.92815 0.91278 0.95934 0.76468 0.80795 0.89183 0.87766 0.88482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.02 37.16 0.34 -1.45 16 2 C -0.09 -1.38 2.27 -90.58 -0.21 -1.58 16 3 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 4 C -0.13 -2.18 5.36 -26.61 -0.14 -2.32 16 5 C 0.12 2.64 4.20 -3.69 -0.02 2.63 16 6 N -0.60 -14.66 2.78 -172.29 -0.48 -15.14 16 7 C -0.26 -7.42 10.04 -15.06 -0.15 -7.58 16 8 H 0.09 2.72 8.05 -52.49 -0.42 2.30 16 9 C 0.02 0.68 5.23 -17.44 -0.09 0.59 16 10 N -0.91 -28.45 13.97 55.49 0.78 -27.68 16 11 Si 0.88 22.65 24.35 -169.99 -4.14 18.51 16 12 H -0.29 -7.08 6.62 56.52 0.37 -6.71 16 13 H -0.30 -7.96 7.11 56.52 0.40 -7.55 16 14 H -0.27 -6.82 6.63 56.52 0.37 -6.45 16 15 C 0.14 3.01 6.09 -3.71 -0.02 2.98 16 16 C 0.13 2.28 2.07 -67.81 -0.14 2.14 16 17 H 0.09 1.86 7.58 -51.93 -0.39 1.47 16 18 N -0.71 -10.37 4.37 -54.67 -0.24 -10.60 16 19 C 0.60 9.68 7.79 -12.39 -0.10 9.58 16 20 O -0.52 -10.35 16.59 5.30 0.09 -10.26 16 21 C 0.00 0.03 7.13 -82.77 -0.59 -0.56 16 22 C -0.15 -1.80 10.80 -39.31 -0.42 -2.23 16 23 C 0.05 0.45 7.44 -17.10 -0.13 0.32 16 24 Cl 0.00 0.01 28.67 -51.86 -1.49 -1.48 16 25 N -0.28 -2.55 3.70 -64.87 -0.24 -2.79 16 26 C 0.08 0.36 11.14 59.85 0.67 1.02 16 27 N -0.24 -2.81 11.66 33.42 0.39 -2.42 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.58 7.36 -51.93 -0.38 0.19 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.03 0.53 7.07 -51.93 -0.37 0.17 16 34 H 0.07 1.78 4.50 -51.93 -0.23 1.55 16 35 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 36 H 0.07 1.58 7.93 -51.93 -0.41 1.17 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.40 4.94 8.03 -40.82 -0.33 4.62 16 39 H 0.17 1.97 8.06 -52.49 -0.42 1.55 16 40 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.10 0.27 7.71 -51.93 -0.40 -0.13 16 LS Contribution 354.76 15.07 5.35 5.35 Total: -1.00 -34.33 354.76 -6.92 -41.25 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -5.93 Total: 1.71 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -1.01 Total: 3.54 kcal Atomic # 7 Polarization: -58.84 SS G_CDS: 0.21 Total: -58.63 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.09 Total: -10.26 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -4.14 Total: 18.51 kcal Atomic # 17 Polarization: 0.01 SS G_CDS: -1.49 Total: -1.48 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.33 -6.92 -41.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967291037.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.170 kcal (2) G-P(sol) polarization free energy of solvation -34.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds