Wall clock time and date at job start Tue Mar 31 2020 16:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.45340 * 2 1 4 4 C 1.53043 * 109.45977 * 119.96383 * 2 1 3 5 5 C 1.53191 * 109.31469 * 181.38836 * 4 2 1 6 6 N 1.46967 * 108.88520 * 305.43992 * 5 4 2 7 7 C 1.36939 * 120.65482 * 233.53005 * 6 5 4 8 8 H 1.07997 * 119.99691 * 152.55422 * 7 6 5 9 9 C 1.38808 * 119.99990 * 332.55740 * 7 6 5 10 10 N 1.31611 * 120.00187 * 159.40601 * 9 7 6 11 11 Si 1.86807 * 120.00080 * 339.40635 * 9 7 6 12 12 H 1.48502 * 109.46912 * 92.90377 * 11 9 7 13 13 H 1.48493 * 109.47014 * 212.90653 * 11 9 7 14 14 H 1.48501 * 109.46860 * 332.90463 * 11 9 7 15 15 C 1.46924 * 118.71435 * 53.35974 * 6 5 4 16 16 C 1.53045 * 109.46386 * 240.03027 * 2 1 3 17 17 H 1.09001 * 109.52263 * 298.58708 * 16 2 1 18 18 N 1.46501 * 109.49381 * 58.66415 * 16 2 1 19 19 C 1.34778 * 119.99884 * 204.84238 * 18 16 2 20 20 O 1.21577 * 120.00043 * 359.97438 * 19 18 16 21 21 C 1.47709 * 120.00112 * 180.02562 * 19 18 16 22 22 C 1.41511 * 126.51141 * 180.02562 * 21 19 18 23 23 C 1.35516 * 105.47910 * 179.97438 * 22 21 19 24 24 Cl 1.73602 * 126.39661 * 180.02562 * 23 22 21 25 25 N 1.35065 * 107.19836 * 359.97438 * 23 22 21 26 26 C 1.46498 * 124.87978 * 179.97438 * 25 23 22 27 27 N 1.28456 * 110.23292 * 359.72654 * 25 23 22 28 28 H 1.09002 * 109.46954 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46826 * 299.96989 * 1 2 3 30 30 H 1.09003 * 109.46954 * 59.97232 * 1 2 3 31 31 H 1.08998 * 109.49429 * 301.33910 * 4 2 1 32 32 H 1.08996 * 109.49685 * 61.43470 * 4 2 1 33 33 H 1.08999 * 109.58697 * 65.14633 * 5 4 2 34 34 H 1.08995 * 109.58828 * 185.43491 * 5 4 2 35 35 H 0.97006 * 120.00623 * 179.97438 * 10 9 7 36 36 H 1.09004 * 109.58697 * 186.78137 * 15 6 5 37 37 H 1.08999 * 109.58734 * 66.49448 * 15 6 5 38 38 H 0.96998 * 120.00009 * 24.84037 * 18 16 2 39 39 H 1.07992 * 127.25555 * 359.97438 * 22 21 19 40 40 H 1.09001 * 109.47030 * 90.00221 * 26 25 23 41 41 H 1.09001 * 109.46955 * 209.99929 * 26 25 23 42 42 H 1.09003 * 109.47554 * 329.99797 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7207 1.2501 5 6 3.5714 -0.6885 1.2644 6 7 4.0707 -1.2468 -0.0001 7 6 4.9810 -2.2699 -0.0004 8 1 5.0186 -2.9589 -0.8312 9 6 5.8552 -2.4214 1.0671 10 7 6.4346 -3.5831 1.2835 11 14 6.2092 -0.9763 2.1968 12 1 5.2797 -1.0137 3.3544 13 1 7.6096 -1.0601 2.6835 14 1 6.0196 0.2934 1.4505 15 6 3.5715 -0.6887 -1.2641 16 6 2.0400 -0.7208 -1.2500 17 1 1.6978 -1.7557 -1.2388 18 7 1.5257 -0.0488 -2.4459 19 6 1.4003 -0.7315 -3.6012 20 8 1.7143 -1.9050 -3.6510 21 6 0.8823 -0.0538 -4.8071 22 6 0.6946 -0.6343 -6.0840 23 6 0.2045 0.3593 -6.8644 24 17 -0.2209 0.2359 -8.5430 25 7 0.1079 1.4631 -6.0920 26 6 -0.3799 2.7662 -6.5503 27 7 0.5003 1.2044 -4.8965 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5134 0.8902 30 1 -0.3633 0.5143 -0.8898 31 1 1.6571 -0.2206 2.1398 32 1 1.6978 -1.7556 1.2384 33 1 3.9142 0.3410 1.3674 34 1 3.9416 -1.2823 2.1000 35 1 7.0458 -3.6889 2.0293 36 1 3.9418 -1.2846 -2.0983 37 1 3.9143 0.3406 -1.3698 38 1 1.2754 0.8875 -2.4063 39 1 0.8989 -1.6540 -6.3750 40 1 -1.4584 2.8228 -6.4028 41 1 0.1068 3.5574 -5.9800 42 1 -0.1511 2.8881 -7.6090 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967291037.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:05 Heat of formation + Delta-G solvation = 39.877111 kcal Electronic energy + Delta-G solvation = -25705.410927 eV Core-core repulsion = 21941.051215 eV Total energy + Delta-G solvation = -3764.359712 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.125 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.87214 -41.02620 -39.29069 -38.00838 -36.29645 -34.79449 -34.42213 -33.40591 -31.81076 -30.91228 -29.26766 -28.39772 -25.79670 -24.93201 -23.44525 -22.91589 -22.67237 -21.38907 -20.92443 -19.19111 -18.78998 -17.64828 -17.63073 -17.35945 -16.91151 -16.27105 -15.67743 -15.57319 -15.25423 -15.18065 -15.14433 -15.01032 -14.60057 -14.41891 -13.85059 -13.75888 -13.58919 -13.53835 -13.29537 -13.16444 -12.82345 -12.70165 -12.61525 -12.49981 -12.20359 -11.98871 -11.78841 -11.61266 -11.47703 -11.29126 -11.18908 -10.78169 -10.40781 -10.16081 -10.11981 -8.92931 -8.16677 -5.50738 0.31032 0.34344 0.73083 1.30702 1.42665 1.45391 1.53201 2.09730 2.24292 2.42137 3.03336 3.09581 3.36351 3.69716 3.82429 3.92324 4.01165 4.10929 4.28071 4.31268 4.32162 4.38225 4.46082 4.52469 4.58235 4.61216 4.82788 4.85266 4.96068 4.98870 5.01517 5.07074 5.12957 5.16147 5.33591 5.36509 5.41220 5.56596 5.84911 6.11341 6.35697 6.66428 6.89553 7.14973 7.60032 7.98168 9.03731 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.021634 B = 0.002845 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.964913 B = 9839.007056 C =10448.644602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.083 4.083 3 H 0.093 0.907 4 C -0.120 4.120 5 C 0.113 3.887 6 N -0.616 5.616 7 C -0.255 4.255 8 H 0.037 0.963 9 C -0.037 4.037 10 N -0.960 5.960 11 Si 0.958 3.042 12 H -0.266 1.266 13 H -0.311 1.311 14 H -0.257 1.257 15 C 0.144 3.856 16 C 0.146 3.854 17 H 0.059 0.941 18 N -0.690 5.690 19 C 0.599 3.401 20 O -0.570 6.570 21 C -0.025 4.025 22 C -0.171 4.171 23 C 0.053 3.947 24 Cl 0.028 6.972 25 N -0.262 5.262 26 C 0.066 3.934 27 N -0.235 5.235 28 H 0.042 0.958 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.098 0.902 32 H 0.050 0.950 33 H 0.044 0.956 34 H 0.052 0.948 35 H 0.263 0.737 36 H 0.032 0.968 37 H 0.042 0.958 38 H 0.417 0.583 39 H 0.170 0.830 40 H 0.112 0.888 41 H 0.119 0.881 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.380 19.417 -15.662 32.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.102 4.102 3 H 0.111 0.889 4 C -0.159 4.159 5 C -0.011 4.011 6 N -0.341 5.341 7 C -0.385 4.385 8 H 0.054 0.946 9 C -0.231 4.231 10 N -0.605 5.605 11 Si 0.785 3.215 12 H -0.192 1.192 13 H -0.240 1.240 14 H -0.181 1.181 15 C 0.018 3.982 16 C 0.039 3.961 17 H 0.077 0.923 18 N -0.341 5.341 19 C 0.384 3.616 20 O -0.446 6.446 21 C -0.183 4.183 22 C -0.200 4.200 23 C -0.097 4.097 24 Cl 0.056 6.944 25 N -0.054 5.054 26 C -0.071 4.071 27 N -0.074 5.074 28 H 0.061 0.939 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.117 0.883 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.051 0.949 37 H 0.059 0.941 38 H 0.255 0.745 39 H 0.188 0.812 40 H 0.130 0.870 41 H 0.137 0.863 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -20.251 19.599 -15.184 32.012 hybrid contribution 0.833 -0.702 -0.274 1.123 sum -19.418 18.897 -15.458 31.195 Atomic orbital electron populations 1.21773 0.92873 1.01761 1.02952 1.21274 0.97136 0.99793 0.92037 0.88920 1.21997 0.94837 1.00681 0.98386 1.21564 0.94814 0.96885 0.87824 1.44351 1.48103 1.40271 1.01347 1.18781 1.10694 1.03032 1.05992 0.94558 1.25981 0.97369 0.99297 1.00461 1.69995 1.33978 1.24405 1.32157 0.85747 0.75693 0.81035 0.78979 1.19163 1.23992 1.18143 1.21270 0.92779 0.96630 0.87538 1.21368 0.93719 0.96669 0.84306 0.92306 1.45664 1.64570 1.15125 1.08775 1.17123 0.77099 0.85217 0.82132 1.90843 1.51658 1.17400 1.84747 1.21529 1.09436 0.91745 0.95610 1.21596 1.05834 1.01215 0.91350 1.21864 1.09593 0.89524 0.88765 1.98417 1.91682 1.97376 1.06965 1.45930 1.43746 1.11186 1.04545 1.22807 1.02859 0.78229 1.03249 1.73604 1.15190 1.16368 1.02261 0.93893 0.90296 0.91686 0.88318 0.93159 0.93827 0.93020 0.92805 0.94920 0.94050 0.74537 0.81248 0.86981 0.86284 0.86533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.02 71.98 0.65 -2.24 16 2 C -0.08 -2.27 2.27 -10.76 -0.02 -2.29 16 3 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 4 C -0.12 -3.84 5.36 30.67 0.16 -3.67 16 5 C 0.11 4.74 4.20 86.35 0.36 5.10 16 6 N -0.62 -30.67 2.78 -699.01 -1.94 -32.62 16 7 C -0.26 -15.59 10.04 84.03 0.84 -14.75 16 8 H 0.04 2.51 8.05 -2.91 -0.02 2.49 16 9 C -0.04 -2.23 5.23 84.86 0.44 -1.79 16 10 N -0.96 -62.90 13.97 21.65 0.30 -62.60 16 11 Si 0.96 47.33 24.35 68.60 1.67 49.00 16 12 H -0.27 -12.06 6.62 99.48 0.66 -11.41 16 13 H -0.31 -15.62 7.11 99.48 0.71 -14.91 16 14 H -0.26 -12.00 6.63 99.48 0.66 -11.34 16 15 C 0.14 6.20 6.09 86.36 0.53 6.73 16 16 C 0.15 5.05 2.07 45.07 0.09 5.15 16 17 H 0.06 2.47 7.58 -2.39 -0.02 2.46 16 18 N -0.69 -19.93 4.37 -445.15 -1.94 -21.87 16 19 C 0.60 19.97 7.79 86.75 0.68 20.65 16 20 O -0.57 -24.39 16.59 -3.96 -0.07 -24.45 16 21 C -0.03 -0.68 7.13 42.46 0.30 -0.38 16 22 C -0.17 -4.14 10.80 22.45 0.24 -3.90 16 23 C 0.05 0.96 7.44 83.57 0.62 1.59 16 24 Cl 0.03 0.35 28.67 -2.72 -0.08 0.27 16 25 N -0.26 -4.16 3.70 -359.15 -1.33 -5.49 16 26 C 0.07 0.33 11.14 127.77 1.42 1.75 16 27 N -0.24 -5.01 11.66 -48.17 -0.56 -5.58 16 28 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.06 1.22 7.36 -2.39 -0.02 1.20 16 31 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.04 1.69 7.07 -2.39 -0.02 1.67 16 34 H 0.05 2.39 4.50 -2.39 -0.01 2.38 16 35 H 0.26 16.21 8.31 -92.70 -0.77 15.44 16 36 H 0.03 1.60 7.93 -2.38 -0.02 1.58 16 37 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.42 9.34 8.03 -92.71 -0.74 8.60 16 39 H 0.17 4.08 8.06 -2.91 -0.02 4.06 16 40 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 41 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 42 H 0.12 0.18 7.71 -2.39 -0.02 0.16 16 Total: -1.00 -80.86 354.76 2.59 -78.27 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: 0.21 Total: 13.12 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: 6.32 Total: 11.94 kcal Atomic # 7 Polarization: -122.68 SS G_CDS: -5.47 Total: -128.15 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.07 Total: -24.45 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 1.67 Total: 49.00 kcal Atomic # 17 Polarization: 0.35 SS G_CDS: -0.08 Total: 0.27 kcal Total: -80.86 2.59 -78.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967291037.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.150 kcal (2) G-P(sol) polarization free energy of solvation -80.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds