Wall clock time and date at job start Tue Mar 31 2020 16:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.58390 * 2 1 4 4 C 1.53191 * 109.58956 * 120.28683 * 2 1 3 5 5 H 1.09001 * 109.49586 * 294.37177 * 4 2 1 6 6 N 1.46497 * 109.49952 * 54.46545 * 4 2 1 7 7 C 1.34777 * 120.00421 * 204.99949 * 6 4 2 8 8 O 1.21283 * 119.99612 * 0.02562 * 7 6 4 9 9 C 1.50698 * 120.00282 * 180.02562 * 7 6 4 10 10 N 1.46495 * 109.46932 * 179.97438 * 9 7 6 11 11 C 1.35053 * 126.03206 * 124.71883 * 10 9 7 12 12 C 1.35373 * 107.72708 * 179.83788 * 11 10 9 13 13 Cl 1.73601 * 126.04773 * 180.17637 * 12 11 10 14 14 C 1.39930 * 107.90816 * 0.42543 * 12 11 10 15 15 N 1.30855 * 108.20957 * 359.73786 * 14 12 11 16 16 C 1.53042 * 109.31334 * 174.42424 * 4 2 1 17 17 C 1.53042 * 109.53382 * 298.63056 * 16 4 2 18 18 C 1.53192 * 109.31411 * 61.36983 * 17 16 4 19 19 N 1.46931 * 109.58716 * 239.71667 * 2 1 3 20 20 C 1.36937 * 120.62751 * 6.60637 * 19 2 1 21 21 H 1.08005 * 120.00271 * 330.98709 * 20 19 2 22 22 C 1.38813 * 120.00086 * 150.97792 * 20 19 2 23 23 N 1.31624 * 119.99931 * 160.81076 * 22 20 19 24 24 Si 1.86805 * 120.00073 * 340.82028 * 22 20 19 25 25 H 1.48503 * 109.47233 * 92.24935 * 24 22 20 26 26 H 1.48493 * 109.46894 * 212.25331 * 24 22 20 27 27 H 1.48502 * 109.46729 * 332.25401 * 24 22 20 28 28 H 1.09003 * 109.47016 * 299.99750 * 1 2 3 29 29 H 1.09007 * 109.47113 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47441 * 59.99818 * 1 2 3 31 31 H 0.97002 * 119.99630 * 25.00973 * 6 4 2 32 32 H 1.09002 * 109.46834 * 300.00427 * 9 7 6 33 33 H 1.08999 * 109.46923 * 60.00582 * 9 7 6 34 34 H 1.08004 * 126.13620 * 359.97438 * 11 10 9 35 35 H 1.07995 * 125.89659 * 179.71571 * 14 12 11 36 36 H 1.09000 * 109.46028 * 58.65150 * 16 4 2 37 37 H 1.08997 * 109.45655 * 178.62628 * 16 4 2 38 38 H 1.09008 * 109.49401 * 181.31721 * 17 16 4 39 39 H 1.08999 * 109.49932 * 301.41352 * 17 16 4 40 40 H 1.08999 * 109.58579 * 65.14814 * 18 17 16 41 41 H 1.08993 * 109.58547 * 185.43418 * 18 17 16 42 42 H 0.96999 * 119.99753 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7279 1.2463 5 1 1.7661 -0.1642 2.1370 6 7 1.4514 -2.0663 1.3097 7 6 1.3285 -2.6934 2.4964 8 8 1.7077 -2.1493 3.5118 9 6 0.7198 -4.0704 2.5615 10 7 0.6998 -4.5301 3.9523 11 6 -0.3876 -4.9487 4.6351 12 6 0.0145 -5.2895 5.8820 13 17 -1.0011 -5.8945 7.1533 14 6 1.3927 -5.0624 5.9667 15 7 1.8039 -4.6073 4.8108 16 6 3.5676 -0.8465 1.1711 17 6 3.9569 -1.6658 -0.0615 18 6 3.4650 -0.9486 -1.3227 19 7 2.0226 -0.6981 -1.1954 20 6 1.1537 -1.1103 -2.1702 21 1 0.1359 -1.3650 -1.9139 22 6 1.5809 -1.2007 -3.4878 23 7 0.9069 -1.9327 -4.3495 24 14 3.1125 -0.2836 -4.0381 25 1 4.2957 -1.1711 -3.9045 26 1 2.9600 0.1280 -5.4567 27 1 3.2993 0.9213 -3.1903 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 -0.8899 31 1 1.1479 -2.5013 0.4975 32 1 -0.2988 -4.0361 2.1750 33 1 1.3136 -4.7589 1.9603 34 1 -1.3967 -5.0040 4.2539 35 1 2.0102 -5.2329 6.8361 36 1 4.0062 0.1488 1.0990 37 1 3.9378 -1.3424 2.0683 38 1 5.0413 -1.7697 -0.1016 39 1 3.4983 -2.6528 -0.0021 40 1 3.9903 0.0003 -1.4318 41 1 3.6540 -1.5734 -2.1955 42 1 1.2057 -1.9961 -5.2701 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993905359.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:38 Heat of formation + Delta-G solvation = 68.692630 kcal Electronic energy + Delta-G solvation = -26108.714719 eV Core-core repulsion = 22345.604542 eV Total energy + Delta-G solvation = -3763.110177 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.125 amu Computer time = 2.60 seconds Orbital eigenvalues (eV) -41.46078 -39.87092 -37.92123 -36.56498 -34.16165 -33.47797 -32.71483 -31.84352 -30.44866 -30.06021 -27.63080 -26.37462 -24.97594 -22.85718 -21.88110 -21.37060 -20.99722 -20.27107 -19.03460 -17.67343 -17.31411 -16.58951 -15.82115 -15.53007 -15.42115 -14.90921 -14.60208 -14.49377 -14.03696 -13.79718 -13.71815 -13.58578 -13.42257 -13.13920 -12.64938 -12.50870 -12.20273 -11.88809 -11.76737 -11.65185 -11.53425 -11.34830 -10.90591 -10.75737 -10.62782 -10.61018 -10.36920 -10.08493 -10.03925 -9.60249 -9.58188 -9.47291 -8.78150 -8.67870 -8.58080 -7.07420 -6.06768 -3.46001 1.53560 1.75200 2.48033 2.58596 2.66853 3.24685 3.31625 3.42101 3.43969 4.38223 4.43175 4.50164 4.73715 4.76552 4.81857 4.90384 5.13440 5.28182 5.32204 5.37504 5.42734 5.43839 5.63390 5.86500 5.97326 5.99624 6.18936 6.19447 6.21171 6.26502 6.37446 6.43413 6.54604 6.60701 6.65351 6.73771 6.83003 6.92813 7.40364 7.74308 7.83785 8.20875 8.35792 8.80477 9.60245 9.97415 11.08224 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.024711 B = 0.002829 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.812089 B = 9896.831467 C =10226.397499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.163 3.837 3 H 0.045 0.955 4 C 0.137 3.863 5 H 0.080 0.920 6 N -0.699 5.699 7 C 0.497 3.503 8 O -0.525 6.525 9 C 0.113 3.887 10 N -0.348 5.348 11 C 0.073 3.927 12 C -0.187 4.187 13 Cl -0.048 7.048 14 C 0.055 3.945 15 N -0.248 5.248 16 C -0.123 4.123 17 C -0.131 4.131 18 C 0.124 3.876 19 N -0.602 5.602 20 C -0.266 4.266 21 H 0.092 0.908 22 C 0.029 3.971 23 N -0.907 5.907 24 Si 0.883 3.117 25 H -0.289 1.289 26 H -0.305 1.305 27 H -0.271 1.271 28 H 0.041 0.959 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.412 0.588 32 H 0.129 0.871 33 H 0.119 0.881 34 H 0.183 0.817 35 H 0.189 0.811 36 H 0.064 0.936 37 H 0.057 0.943 38 H 0.052 0.948 39 H 0.062 0.938 40 H 0.025 0.975 41 H 0.073 0.927 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.912 -5.387 15.823 16.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.056 3.944 3 H 0.062 0.938 4 C 0.031 3.969 5 H 0.098 0.902 6 N -0.352 5.352 7 C 0.280 3.720 8 O -0.400 6.400 9 C -0.012 4.012 10 N -0.130 5.130 11 C -0.074 4.074 12 C -0.226 4.226 13 Cl -0.020 7.020 14 C -0.133 4.133 15 N -0.068 5.068 16 C -0.161 4.161 17 C -0.171 4.171 18 C -0.001 4.001 19 N -0.327 5.327 20 C -0.394 4.394 21 H 0.110 0.890 22 C -0.171 4.171 23 N -0.549 5.549 24 Si 0.714 3.286 25 H -0.217 1.217 26 H -0.233 1.233 27 H -0.196 1.196 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.249 0.751 32 H 0.147 0.853 33 H 0.137 0.863 34 H 0.200 0.800 35 H 0.206 0.794 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.043 0.957 41 H 0.091 0.909 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.763 -4.619 15.615 16.302 hybrid contribution -0.007 -0.039 -0.371 0.373 sum -0.770 -4.658 15.244 15.958 Atomic orbital electron populations 1.21793 0.94832 1.01913 1.00782 1.20742 0.94025 0.93800 0.85811 0.93757 1.21511 0.92765 0.82876 0.99788 0.90172 1.45923 1.61790 1.18716 1.08743 1.20312 0.80158 0.87007 0.84522 1.90760 1.48785 1.66229 1.34271 1.21644 1.05304 0.95890 0.78376 1.47866 1.05325 1.49277 1.10536 1.22221 0.93810 0.99501 0.91910 1.20710 0.92548 1.17501 0.91827 1.98317 1.67486 1.86837 1.49383 1.23896 0.93061 0.99052 0.97247 1.77656 1.08813 1.19978 1.00381 1.21787 0.95599 1.00504 0.98246 1.21945 0.99359 0.99776 0.95979 1.21371 0.85039 0.97201 0.96473 1.44488 1.02206 1.65752 1.20291 1.18879 0.95691 1.39042 0.85772 0.89013 1.25314 0.97556 0.98436 0.95805 1.69800 1.41170 1.39292 1.04671 0.86965 0.83348 0.81382 0.76938 1.21681 1.23310 1.19592 0.93990 0.92435 0.91395 0.75126 0.85344 0.86281 0.79963 0.79388 0.91722 0.92391 0.92881 0.91930 0.95733 0.90913 0.92697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 7.72 37.16 0.29 -1.90 16 2 C 0.16 2.82 3.19 -67.60 -0.22 2.60 16 3 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 4 C 0.14 2.13 2.33 -67.81 -0.16 1.97 16 5 H 0.08 1.28 7.58 -51.93 -0.39 0.89 16 6 N -0.70 -9.93 3.46 -53.69 -0.19 -10.12 16 7 C 0.50 7.02 7.83 -10.99 -0.09 6.93 16 8 O -0.52 -9.44 15.37 5.55 0.09 -9.36 16 9 C 0.11 1.17 6.99 -5.20 -0.04 1.14 16 10 N -0.35 -4.26 3.40 -62.51 -0.21 -4.47 16 11 C 0.07 0.75 11.43 -17.16 -0.20 0.55 16 12 C -0.19 -2.05 6.65 -39.97 -0.27 -2.32 16 13 Cl -0.05 -0.47 29.30 -51.86 -1.52 -1.98 16 14 C 0.06 0.66 12.02 -17.33 -0.21 0.45 16 15 N -0.25 -3.57 11.64 30.64 0.36 -3.22 16 16 C -0.12 -1.92 5.58 -26.69 -0.15 -2.07 16 17 C -0.13 -2.18 5.93 -26.61 -0.16 -2.34 16 18 C 0.12 2.47 4.20 -3.69 -0.02 2.45 16 19 N -0.60 -12.37 2.42 -164.75 -0.40 -12.77 16 20 C -0.27 -6.43 9.05 -15.06 -0.14 -6.57 16 21 H 0.09 2.31 6.39 -52.48 -0.34 1.98 16 22 C 0.03 0.75 5.25 -17.43 -0.09 0.66 16 23 N -0.91 -25.72 13.97 55.49 0.78 -24.95 16 24 Si 0.88 21.14 24.34 -169.99 -4.14 17.00 16 25 H -0.29 -6.75 6.62 56.52 0.37 -6.38 16 26 H -0.30 -7.58 7.11 56.52 0.40 -7.17 16 27 H -0.27 -6.42 6.63 56.52 0.37 -6.05 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.92 6.40 -51.93 -0.33 0.59 16 30 H 0.07 1.21 7.63 -51.93 -0.40 0.82 16 31 H 0.41 5.91 7.78 -40.82 -0.32 5.59 16 32 H 0.13 0.88 8.07 -51.93 -0.42 0.47 16 33 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.18 1.23 8.06 -52.48 -0.42 0.81 16 35 H 0.19 1.70 8.06 -52.49 -0.42 1.28 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.05 0.81 8.14 -51.92 -0.42 0.38 16 39 H 0.06 1.05 7.53 -51.93 -0.39 0.66 16 40 H 0.02 0.50 7.02 -51.93 -0.36 0.13 16 41 H 0.07 1.60 4.63 -51.93 -0.24 1.36 16 42 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 348.73 15.07 5.26 5.26 Total: -1.00 -31.41 348.73 -7.17 -38.59 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -5.76 Total: 4.45 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: -1.43 Total: 1.57 kcal Atomic # 7 Polarization: -55.85 SS G_CDS: 0.33 Total: -55.51 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.09 Total: -9.36 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.14 Total: 17.00 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.52 Total: -1.98 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.41 -7.17 -38.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993905359.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.279 kcal (2) G-P(sol) polarization free energy of solvation -31.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.60 seconds