Wall clock time and date at job start Tue Mar 31 2020 16:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.58390 * 2 1 4 4 C 1.53191 * 109.58956 * 120.28683 * 2 1 3 5 5 H 1.09001 * 109.49586 * 294.37177 * 4 2 1 6 6 N 1.46497 * 109.49952 * 54.46545 * 4 2 1 7 7 C 1.34777 * 120.00421 * 204.99949 * 6 4 2 8 8 O 1.21283 * 119.99612 * 0.02562 * 7 6 4 9 9 C 1.50698 * 120.00282 * 180.02562 * 7 6 4 10 10 N 1.46495 * 109.46932 * 179.97438 * 9 7 6 11 11 C 1.35053 * 126.03206 * 124.71883 * 10 9 7 12 12 C 1.35373 * 107.72708 * 179.83788 * 11 10 9 13 13 Cl 1.73601 * 126.04773 * 180.17637 * 12 11 10 14 14 C 1.39930 * 107.90816 * 0.42543 * 12 11 10 15 15 N 1.30855 * 108.20957 * 359.73786 * 14 12 11 16 16 C 1.53042 * 109.31334 * 174.42424 * 4 2 1 17 17 C 1.53042 * 109.53382 * 298.63056 * 16 4 2 18 18 C 1.53192 * 109.31411 * 61.36983 * 17 16 4 19 19 N 1.46931 * 109.58716 * 239.71667 * 2 1 3 20 20 C 1.36937 * 120.62751 * 6.60637 * 19 2 1 21 21 H 1.08005 * 120.00271 * 330.98709 * 20 19 2 22 22 C 1.38813 * 120.00086 * 150.97792 * 20 19 2 23 23 N 1.31624 * 119.99931 * 160.81076 * 22 20 19 24 24 Si 1.86805 * 120.00073 * 340.82028 * 22 20 19 25 25 H 1.48503 * 109.47233 * 92.24935 * 24 22 20 26 26 H 1.48493 * 109.46894 * 212.25331 * 24 22 20 27 27 H 1.48502 * 109.46729 * 332.25401 * 24 22 20 28 28 H 1.09003 * 109.47016 * 299.99750 * 1 2 3 29 29 H 1.09007 * 109.47113 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47441 * 59.99818 * 1 2 3 31 31 H 0.97002 * 119.99630 * 25.00973 * 6 4 2 32 32 H 1.09002 * 109.46834 * 300.00427 * 9 7 6 33 33 H 1.08999 * 109.46923 * 60.00582 * 9 7 6 34 34 H 1.08004 * 126.13620 * 359.97438 * 11 10 9 35 35 H 1.07995 * 125.89659 * 179.71571 * 14 12 11 36 36 H 1.09000 * 109.46028 * 58.65150 * 16 4 2 37 37 H 1.08997 * 109.45655 * 178.62628 * 16 4 2 38 38 H 1.09008 * 109.49401 * 181.31721 * 17 16 4 39 39 H 1.08999 * 109.49932 * 301.41352 * 17 16 4 40 40 H 1.08999 * 109.58579 * 65.14814 * 18 17 16 41 41 H 1.08993 * 109.58547 * 185.43418 * 18 17 16 42 42 H 0.96999 * 119.99753 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7279 1.2463 5 1 1.7661 -0.1642 2.1370 6 7 1.4514 -2.0663 1.3097 7 6 1.3285 -2.6934 2.4964 8 8 1.7077 -2.1493 3.5118 9 6 0.7198 -4.0704 2.5615 10 7 0.6998 -4.5301 3.9523 11 6 -0.3876 -4.9487 4.6351 12 6 0.0145 -5.2895 5.8820 13 17 -1.0011 -5.8945 7.1533 14 6 1.3927 -5.0624 5.9667 15 7 1.8039 -4.6073 4.8108 16 6 3.5676 -0.8465 1.1711 17 6 3.9569 -1.6658 -0.0615 18 6 3.4650 -0.9486 -1.3227 19 7 2.0226 -0.6981 -1.1954 20 6 1.1537 -1.1103 -2.1702 21 1 0.1359 -1.3650 -1.9139 22 6 1.5809 -1.2007 -3.4878 23 7 0.9069 -1.9327 -4.3495 24 14 3.1125 -0.2836 -4.0381 25 1 4.2957 -1.1711 -3.9045 26 1 2.9600 0.1280 -5.4567 27 1 3.2993 0.9213 -3.1903 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 -0.8899 31 1 1.1479 -2.5013 0.4975 32 1 -0.2988 -4.0361 2.1750 33 1 1.3136 -4.7589 1.9603 34 1 -1.3967 -5.0040 4.2539 35 1 2.0102 -5.2329 6.8361 36 1 4.0062 0.1488 1.0990 37 1 3.9378 -1.3424 2.0683 38 1 5.0413 -1.7697 -0.1016 39 1 3.4983 -2.6528 -0.0021 40 1 3.9903 0.0003 -1.4318 41 1 3.6540 -1.5734 -2.1955 42 1 1.2057 -1.9961 -5.2701 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993905359.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:31 Heat of formation + Delta-G solvation = 48.444296 kcal Electronic energy + Delta-G solvation = -26109.592752 eV Core-core repulsion = 22345.604542 eV Total energy + Delta-G solvation = -3763.988211 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.125 amu Computer time = 5.20 seconds Orbital eigenvalues (eV) -42.31403 -41.09988 -39.28209 -37.33539 -35.66269 -34.45254 -34.11261 -33.47034 -31.84437 -30.99407 -28.66908 -27.68935 -26.64653 -24.33004 -22.99269 -22.32753 -22.17615 -21.42536 -20.40948 -18.65406 -18.38838 -18.21106 -17.25228 -16.84886 -16.68524 -15.96298 -15.83059 -15.60058 -15.24851 -15.15579 -14.96182 -14.89644 -14.39963 -14.29007 -14.17577 -13.84816 -13.47041 -13.35460 -13.19342 -12.72686 -12.64453 -12.52287 -12.33603 -12.27309 -12.14949 -11.92210 -11.61820 -11.45827 -11.38541 -11.19953 -11.12667 -10.61622 -10.45177 -9.96755 -9.40334 -8.85023 -8.08569 -5.41297 0.71776 0.97205 1.33131 1.46246 1.51636 1.59664 1.64173 1.78536 2.26728 2.47473 3.11130 3.30060 3.59066 3.70733 3.86708 3.93486 3.99288 4.07148 4.08576 4.17374 4.24192 4.49639 4.52329 4.55489 4.61687 4.63878 4.82511 4.86128 4.94458 5.00331 5.07590 5.17661 5.28215 5.36902 5.37338 5.48528 5.62057 5.79422 5.96130 6.25058 6.55481 6.61062 6.96765 7.24949 7.69442 8.10346 9.09823 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.024711 B = 0.002829 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.812089 B = 9896.831467 C =10226.397499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.161 3.839 3 H 0.048 0.952 4 C 0.145 3.855 5 H 0.082 0.918 6 N -0.696 5.696 7 C 0.499 3.501 8 O -0.564 6.564 9 C 0.113 3.887 10 N -0.357 5.357 11 C 0.081 3.919 12 C -0.201 4.201 13 Cl -0.039 7.039 14 C 0.052 3.948 15 N -0.298 5.298 16 C -0.117 4.117 17 C -0.121 4.121 18 C 0.120 3.880 19 N -0.610 5.610 20 C -0.229 4.229 21 H 0.081 0.919 22 C -0.028 4.028 23 N -0.953 5.953 24 Si 0.929 3.071 25 H -0.283 1.283 26 H -0.322 1.322 27 H -0.266 1.266 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.046 0.954 31 H 0.412 0.588 32 H 0.169 0.831 33 H 0.134 0.866 34 H 0.219 0.781 35 H 0.206 0.794 36 H 0.073 0.927 37 H 0.055 0.945 38 H 0.070 0.930 39 H 0.060 0.940 40 H 0.026 0.974 41 H 0.051 0.949 42 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.175 -5.537 17.419 18.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 H 0.066 0.934 4 C 0.038 3.962 5 H 0.100 0.900 6 N -0.348 5.348 7 C 0.284 3.716 8 O -0.443 6.443 9 C -0.011 4.011 10 N -0.139 5.139 11 C -0.066 4.066 12 C -0.240 4.240 13 Cl -0.011 7.011 14 C -0.136 4.136 15 N -0.118 5.118 16 C -0.155 4.155 17 C -0.160 4.160 18 C -0.004 4.004 19 N -0.335 5.335 20 C -0.359 4.359 21 H 0.098 0.902 22 C -0.223 4.223 23 N -0.600 5.600 24 Si 0.761 3.239 25 H -0.210 1.210 26 H -0.252 1.252 27 H -0.191 1.191 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.249 0.751 32 H 0.186 0.814 33 H 0.152 0.848 34 H 0.235 0.765 35 H 0.222 0.778 36 H 0.092 0.908 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.044 0.956 41 H 0.069 0.931 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.002 -4.758 17.253 17.925 hybrid contribution 0.022 0.022 -0.729 0.730 sum -0.980 -4.737 16.524 17.217 Atomic orbital electron populations 1.21724 0.93955 1.02038 1.00983 1.20900 0.94780 0.93833 0.84941 0.93387 1.21302 0.92790 0.83536 0.98530 0.90045 1.45878 1.61656 1.18248 1.09013 1.20874 0.79198 0.88007 0.83494 1.90747 1.50499 1.67548 1.35468 1.21851 1.07569 0.93451 0.78183 1.48007 1.05355 1.49591 1.10940 1.22828 0.94673 0.97696 0.91449 1.20861 0.92456 1.18091 0.92573 1.98318 1.67041 1.86743 1.49024 1.24277 0.93973 0.98085 0.97232 1.77583 1.10630 1.21942 1.01653 1.21735 0.95585 1.00783 0.97430 1.21820 1.00348 0.99241 0.94571 1.21374 0.84577 0.97187 0.97295 1.44594 1.02243 1.66278 1.20373 1.18906 0.95460 1.35503 0.85985 0.90158 1.25780 0.99880 1.00125 0.96474 1.69900 1.43308 1.42014 1.04761 0.86202 0.81561 0.80655 0.75508 1.20979 1.25183 1.19086 0.91510 0.92362 0.93451 0.75056 0.81392 0.84811 0.76466 0.77784 0.90822 0.92643 0.91162 0.92163 0.95619 0.93080 0.93367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.93 7.72 71.98 0.56 -3.37 16 2 C 0.16 5.24 3.19 44.97 0.14 5.38 16 3 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 4 C 0.14 4.18 2.33 45.07 0.10 4.29 16 5 H 0.08 2.41 7.58 -2.39 -0.02 2.39 16 6 N -0.70 -18.23 3.46 -442.17 -1.53 -19.76 16 7 C 0.50 13.04 7.83 87.66 0.69 13.73 16 8 O -0.56 -19.50 15.37 -3.04 -0.05 -19.54 16 9 C 0.11 2.04 6.99 85.63 0.60 2.64 16 10 N -0.36 -7.95 3.40 -351.67 -1.20 -9.15 16 11 C 0.08 1.44 11.43 83.54 0.95 2.40 16 12 C -0.20 -4.04 6.65 22.02 0.15 -3.90 16 13 Cl -0.04 -0.69 29.30 -2.72 -0.08 -0.77 16 14 C 0.05 1.17 12.02 85.25 1.02 2.20 16 15 N -0.30 -8.26 11.64 -56.98 -0.66 -8.92 16 16 C -0.12 -3.37 5.58 30.62 0.17 -3.20 16 17 C -0.12 -3.73 5.93 30.67 0.18 -3.55 16 18 C 0.12 4.58 4.20 86.36 0.36 4.94 16 19 N -0.61 -24.12 2.42 -675.14 -1.63 -25.76 16 20 C -0.23 -10.95 9.05 84.03 0.76 -10.19 16 21 H 0.08 4.01 6.39 -2.91 -0.02 3.99 16 22 C -0.03 -1.47 5.25 84.86 0.45 -1.02 16 23 N -0.95 -55.08 13.97 21.65 0.30 -54.78 16 24 Si 0.93 43.84 24.34 68.60 1.67 45.51 16 25 H -0.28 -12.84 6.62 99.48 0.66 -12.18 16 26 H -0.32 -15.99 7.11 99.48 0.71 -15.28 16 27 H -0.27 -12.13 6.63 99.48 0.66 -11.47 16 28 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.06 1.75 6.40 -2.38 -0.02 1.73 16 30 H 0.05 1.63 7.63 -2.39 -0.02 1.61 16 31 H 0.41 10.92 7.78 -92.71 -0.72 10.20 16 32 H 0.17 1.63 8.07 -2.39 -0.02 1.61 16 33 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.22 2.06 8.06 -2.91 -0.02 2.04 16 35 H 0.21 3.53 8.06 -2.91 -0.02 3.51 16 36 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 39 H 0.06 1.90 7.53 -2.39 -0.02 1.88 16 40 H 0.03 0.98 7.02 -2.39 -0.02 0.97 16 41 H 0.05 2.18 4.63 -2.39 -0.01 2.17 16 42 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -68.29 348.73 3.19 -65.10 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: 0.23 Total: 17.72 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: 6.14 Total: 10.35 kcal Atomic # 7 Polarization: -113.65 SS G_CDS: -4.72 Total: -118.37 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -0.05 Total: -19.54 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.67 Total: 45.51 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -0.08 Total: -0.77 kcal Total: -68.29 3.19 -65.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993905359.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.547 kcal (2) G-P(sol) polarization free energy of solvation -68.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.20 seconds