Wall clock time and date at job start Tue Mar 31 2020 17:56:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 N 1.46503 * 109.46898 * 2 1
4 4 C 1.34774 * 119.99780 * 92.85202 * 3 2 1
5 5 O 1.21610 * 119.99794 * 175.52999 * 4 3 2
6 6 C 1.47386 * 120.00403 * 355.53697 * 4 3 2
7 7 C 1.38061 * 126.41936 * 264.51345 * 6 4 3
8 8 C 1.50702 * 126.28611 * 359.97438 * 7 6 4
9 9 N 1.34236 * 107.43591 * 179.97438 * 7 6 4
10 10 H 0.96998 * 125.74008 * 180.02562 * 9 7 6
11 11 N 1.39934 * 108.52243 * 359.97438 * 9 7 6
12 12 C 1.30525 * 108.89500 * 359.74996 * 11 9 7
13 13 Cl 1.73596 * 126.00853 * 180.25861 * 12 11 9
14 14 C 1.46501 * 120.00012 * 273.12487 * 3 2 1
15 15 H 1.08997 * 110.63766 * 18.96564 * 14 3 2
16 16 C 1.55158 * 110.72137 * 255.62943 * 14 3 2
17 17 C 1.54908 * 101.58129 * 277.14109 * 16 14 3
18 18 N 1.47423 * 104.83180 * 322.98966 * 17 16 14
19 19 C 1.36940 * 125.64626 * 204.16746 * 18 17 16
20 20 H 1.08000 * 120.00092 * 333.93828 * 19 18 17
21 21 C 1.38813 * 119.99739 * 153.94264 * 19 18 17
22 22 N 1.31617 * 119.99860 * 158.97651 * 21 19 18
23 23 Si 1.86795 * 120.00261 * 338.97131 * 21 19 18
24 24 H 1.48509 * 109.47110 * 90.06890 * 23 21 19
25 25 H 1.48496 * 109.47459 * 210.06951 * 23 21 19
26 26 H 1.48506 * 109.47413 * 330.07042 * 23 21 19
27 27 C 1.47022 * 108.70417 * 24.12684 * 18 17 16
28 28 H 1.09000 * 109.47331 * 185.10097 * 1 2 3
29 29 H 1.09001 * 109.47124 * 305.10450 * 1 2 3
30 30 H 1.09001 * 109.47244 * 65.10378 * 1 2 3
31 31 H 1.08997 * 109.47226 * 240.00191 * 2 1 3
32 32 H 1.08994 * 109.47250 * 120.00260 * 2 1 3
33 33 H 1.09003 * 109.46979 * 95.15549 * 8 7 6
34 34 H 1.08997 * 109.47302 * 215.15537 * 8 7 6
35 35 H 1.08995 * 109.46514 * 335.15578 * 8 7 6
36 36 H 1.09007 * 111.00138 * 35.21695 * 16 14 3
37 37 H 1.09000 * 111.00319 * 159.05949 * 16 14 3
38 38 H 1.09005 * 110.35929 * 204.15184 * 17 16 14
39 39 H 1.09002 * 110.45955 * 81.87877 * 17 16 14
40 40 H 0.97004 * 120.00087 * 179.97438 * 22 21 19
41 41 H 1.08996 * 109.88538 * 239.52284 * 27 18 17
42 42 H 1.09003 * 109.87602 * 118.35838 * 27 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3813 0.0000
4 6 2.2976 1.9972 1.1658
5 8 2.7794 3.1138 1.1633
6 6 2.0194 1.3175 2.4436
7 6 0.8863 1.4619 3.2191
8 6 -0.2961 2.3454 2.9148
9 7 1.0310 0.6708 4.2938
10 1 0.3880 0.5686 5.0128
11 7 2.2650 0.0174 4.2020
12 6 2.8598 0.3903 3.1016
13 17 4.4120 -0.1533 2.5459
14 6 2.1972 2.0949 -1.2668
15 1 1.6288 1.6135 -2.0626
16 6 3.7009 2.1853 -1.6384
17 6 4.1535 3.4115 -0.8069
18 7 3.0128 4.3439 -0.8579
19 6 3.0830 5.7009 -0.6882
20 1 3.8848 6.1316 -0.1067
21 6 2.1237 6.5229 -1.2635
22 7 1.9279 7.7359 -0.7917
23 14 1.1108 5.9075 -2.7073
24 1 -0.1192 5.2456 -2.2027
25 1 0.7361 7.0540 -3.5735
26 1 1.9100 4.9336 -3.4934
27 6 1.7874 3.5757 -1.1220
28 1 -0.3634 -1.0236 0.0914
29 1 -0.3633 0.5910 0.8407
30 1 -0.3634 0.4326 -0.9322
31 1 1.8933 -0.5138 -0.8900
32 1 1.8933 -0.5138 0.8899
33 1 -1.0669 1.7607 2.4127
34 1 -0.6954 2.7509 3.8444
35 1 0.0190 3.1636 2.2673
36 1 4.2342 1.2859 -1.3303
37 1 3.8295 2.3676 -2.7053
38 1 5.0368 3.8678 -1.2540
39 1 4.3587 3.1188 0.2229
40 1 1.2577 8.3104 -1.1939
41 1 1.3232 3.9238 -2.0447
42 1 1.0927 3.6883 -0.2896
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001033849343.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 17:56:18
Heat of formation + Delta-G solvation = 72.446726 kcal
Electronic energy + Delta-G solvation = -27601.909459 eV
Core-core repulsion = 23838.962072 eV
Total energy + Delta-G solvation = -3762.947387 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 326.125 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-42.69877 -41.17168 -38.09178 -37.92355 -36.69095 -34.40030 -33.74332 -32.37339
-31.78380 -30.61191 -29.48064 -28.31829 -26.23731 -24.63363 -23.65589 -23.01968
-22.21030 -21.56007 -19.65214 -18.84106 -18.70770 -17.77791 -17.46234 -16.87224
-16.41787 -16.32961 -16.18828 -15.45890 -15.12523 -15.01218 -14.71118 -14.62643
-14.52589 -14.10132 -13.90157 -13.46443 -13.39224 -13.26925 -13.03818 -12.96435
-12.86536 -12.82784 -12.60268 -12.31667 -12.18757 -11.99318 -11.88451 -11.77262
-11.70731 -11.23653 -10.70913 -10.54751 -10.48505 -9.78460 -9.45961 -8.68008
-8.10006 -5.32619 0.35845 0.45737 1.04457 1.30173 1.40277 1.52552
1.71832 1.82604 2.23484 2.48800 3.11283 3.45438 3.59033 3.66130
3.81509 3.83935 4.01730 4.11199 4.12829 4.27103 4.45556 4.50109
4.51974 4.61895 4.68029 4.70459 4.75610 4.84634 4.92849 4.99793
5.03854 5.05223 5.10967 5.17203 5.42817 5.54931 5.82031 5.87253
5.97830 6.20478 6.25348 6.56502 6.93469 7.47295 7.68290 8.32434
9.13087
Molecular weight = 326.13amu
Principal moments of inertia in cm(-1)
A = 0.015509 B = 0.005070 C = 0.004868
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1804.983888 B = 5521.543671 C = 5750.890816
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.168 4.168
2 C 0.107 3.893
3 N -0.594 5.594
4 C 0.571 3.429
5 O -0.514 6.514
6 C -0.281 4.281
7 C 0.155 3.845
8 C -0.100 4.100
9 N -0.427 5.427
10 H 0.465 0.535
11 N -0.289 5.289
12 C 0.147 3.853
13 Cl 0.018 6.982
14 C 0.144 3.856
15 H 0.133 0.867
16 C -0.131 4.131
17 C 0.131 3.869
18 N -0.597 5.597
19 C -0.211 4.211
20 H 0.031 0.969
21 C -0.047 4.047
22 N -0.967 5.967
23 Si 0.962 3.038
24 H -0.277 1.277
25 H -0.310 1.310
26 H -0.258 1.258
27 C 0.126 3.874
28 H 0.085 0.915
29 H 0.048 0.952
30 H 0.059 0.941
31 H 0.102 0.898
32 H 0.073 0.927
33 H 0.117 0.883
34 H 0.110 0.890
35 H 0.061 0.939
36 H 0.095 0.905
37 H 0.086 0.914
38 H 0.020 0.980
39 H 0.036 0.964
40 H 0.259 0.741
41 H 0.017 0.983
42 H 0.013 0.987
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.929 -24.934 5.072 26.371
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.226 4.226
2 C -0.014 4.014
3 N -0.328 5.328
4 C 0.357 3.643
5 O -0.388 6.388
6 C -0.296 4.296
7 C 0.022 3.978
8 C -0.158 4.158
9 N -0.140 5.140
10 H 0.315 0.685
11 N -0.116 5.116
12 C -0.045 4.045
13 Cl 0.045 6.955
14 C 0.040 3.960
15 H 0.151 0.849
16 C -0.171 4.171
17 C 0.006 3.994
18 N -0.322 5.322
19 C -0.341 4.341
20 H 0.049 0.951
21 C -0.240 4.240
22 N -0.615 5.615
23 Si 0.792 3.208
24 H -0.204 1.204
25 H -0.239 1.239
26 H -0.183 1.183
27 C 0.001 3.999
28 H 0.104 0.896
29 H 0.067 0.933
30 H 0.079 0.921
31 H 0.120 0.880
32 H 0.092 0.908
33 H 0.135 0.865
34 H 0.128 0.872
35 H 0.080 0.920
36 H 0.113 0.887
37 H 0.105 0.895
38 H 0.038 0.962
39 H 0.054 0.946
40 H 0.068 0.932
41 H 0.034 0.966
42 H 0.031 0.969
Dipole moment (debyes) X Y Z Total
from point charges -6.466 -24.928 6.059 26.456
hybrid contribution -0.332 1.130 -0.567 1.307
sum -6.797 -23.798 5.491 25.352
Atomic orbital electron populations
1.22222 0.94942 1.03088 1.02348 1.21708 0.95270 0.80482 1.03986
1.47930 1.65872 1.14808 1.04207 1.17554 0.78352 0.85104 0.83279
1.91133 1.40852 1.19924 1.86903 1.19857 0.98303 1.09638 1.01824
1.21562 0.96348 0.92897 0.86992 1.20736 0.92801 0.97390 1.04865
1.45766 1.15191 1.33086 1.19908 0.68482 1.77042 0.95107 1.20992
1.18413 1.22587 0.90847 0.97025 0.94086 1.98407 1.21331 1.88666
1.87055 1.22034 0.97134 0.90634 0.86153 0.84925 1.23186 0.95374
0.98047 1.00454 1.21915 0.89715 0.90186 0.97536 1.44294 1.02739
1.01343 1.83858 1.18416 1.10867 0.81266 1.23576 0.95119 1.25801
1.00815 0.95511 1.01849 1.70014 1.37177 1.11165 1.43105 0.85611
0.78597 0.75818 0.80815 1.20384 1.23930 1.18324 1.21742 0.90206
0.91774 0.96188 0.89626 0.93269 0.92143 0.87977 0.90850 0.86520
0.87154 0.92011 0.88668 0.89524 0.96157 0.94636 0.93208 0.96595
0.96899
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.48 10.24 71.98 0.74 -1.74 16
2 C 0.11 1.94 5.92 86.38 0.51 2.45 16
3 N -0.59 -16.46 2.52 -795.15 -2.00 -18.47 16
4 C 0.57 19.65 6.04 86.65 0.52 20.17 16
5 O -0.51 -24.07 10.52 -4.06 -0.04 -24.11 16
6 C -0.28 -7.96 4.33 -20.13 -0.09 -8.05 16
7 C 0.16 3.38 7.01 42.15 0.30 3.67 16
8 C -0.10 -1.78 9.90 71.24 0.71 -1.07 16
9 N -0.43 -7.50 7.28 -46.80 -0.34 -7.84 16
10 H 0.46 4.13 8.96 -213.43 -1.91 2.22 16
11 N -0.29 -6.95 12.64 -48.96 -0.62 -7.57 16
12 C 0.15 3.94 7.11 85.66 0.61 4.55 16
13 Cl 0.02 0.45 29.19 -2.72 -0.08 0.37 16
14 C 0.14 4.48 3.67 46.18 0.17 4.65 16
15 H 0.13 3.04 8.04 -2.39 -0.02 3.02 16
16 C -0.13 -4.16 6.74 31.99 0.22 -3.95 16
17 C 0.13 5.84 6.28 86.85 0.55 6.38 16
18 N -0.60 -31.50 1.93 -691.98 -1.34 -32.83 16
19 C -0.21 -13.48 10.54 84.03 0.89 -12.60 16
20 H 0.03 2.21 8.06 -2.91 -0.02 2.18 16
21 C -0.05 -2.96 5.44 84.86 0.46 -2.50 16
22 N -0.97 -65.17 13.97 21.65 0.30 -64.87 16
23 Si 0.96 49.44 24.50 68.60 1.68 51.12 16
24 H -0.28 -13.41 7.03 99.48 0.70 -12.72 16
25 H -0.31 -15.98 7.11 99.48 0.71 -15.27 16
26 H -0.26 -12.36 6.87 99.48 0.68 -11.67 16
27 C 0.13 5.61 4.51 86.73 0.39 6.00 16
28 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16
29 H 0.05 0.81 6.36 -2.39 -0.02 0.79 16
30 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16
31 H 0.10 1.35 8.10 -2.39 -0.02 1.33 16
32 H 0.07 1.37 6.27 -2.39 -0.01 1.36 16
33 H 0.12 1.41 7.11 -2.39 -0.02 1.40 16
34 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16
35 H 0.06 1.66 7.84 -2.39 -0.02 1.64 16
36 H 0.09 2.49 8.14 -2.38 -0.02 2.47 16
37 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16
38 H 0.02 0.93 8.14 -2.38 -0.02 0.91 16
39 H 0.04 1.72 5.61 -2.39 -0.01 1.71 16
40 H 0.26 16.45 8.31 -92.71 -0.77 15.68 16
41 H 0.02 0.76 3.26 -2.39 -0.01 0.75 16
42 H 0.01 0.64 7.04 -2.39 -0.02 0.62 16
Total: -1.00 -86.90 345.07 2.65 -84.25
By element:
Atomic # 1 Polarization: 2.86 SS G_CDS: -0.88 Total: 1.99 kcal
Atomic # 6 Polarization: 12.01 SS G_CDS: 5.96 Total: 17.97 kcal
Atomic # 7 Polarization: -127.58 SS G_CDS: -4.00 Total: -131.58 kcal
Atomic # 8 Polarization: -24.07 SS G_CDS: -0.04 Total: -24.11 kcal
Atomic # 14 Polarization: 49.44 SS G_CDS: 1.68 Total: 51.12 kcal
Atomic # 17 Polarization: 0.45 SS G_CDS: -0.08 Total: 0.37 kcal
Total: -86.90 2.65 -84.25 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001033849343.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 156.695 kcal
(2) G-P(sol) polarization free energy of solvation -86.898 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.798 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.649 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.249 kcal
(6) G-S(sol) free energy of system = (1) + (5) 72.447 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds