Wall clock time and date at job start Tue Mar 31 2020 16:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.50093 * 2 1 4 4 C 1.53190 * 109.49535 * 239.93363 * 2 1 3 5 5 N 1.46932 * 108.77224 * 185.41507 * 4 2 1 6 6 C 1.34782 * 120.62651 * 233.62396 * 5 4 2 7 7 O 1.21641 * 120.00327 * 354.70334 * 6 5 4 8 8 C 1.47025 * 119.99563 * 174.69060 * 6 5 4 9 9 C 1.38545 * 126.91102 * 268.93238 * 8 6 5 10 10 Cl 1.73597 * 127.33346 * 0.02562 * 9 8 6 11 11 C 1.39811 * 105.33055 * 179.86185 * 9 8 6 12 12 N 1.30841 * 107.87169 * 0.41119 * 11 9 8 13 13 N 1.28431 * 110.98077 * 359.73686 * 12 11 9 14 14 C 1.46501 * 125.18283 * 179.97438 * 13 12 11 15 15 C 1.46921 * 118.74159 * 53.61031 * 5 4 2 16 16 C 1.53195 * 108.77399 * 306.39055 * 15 5 4 17 17 C 1.53033 * 109.31333 * 54.63430 * 16 15 5 18 18 H 1.09006 * 109.45234 * 58.65037 * 17 16 15 19 19 N 1.46501 * 109.46223 * 178.61402 * 17 16 15 20 20 C 1.36935 * 120.00331 * 275.07338 * 19 17 16 21 21 H 1.08004 * 119.99607 * 359.97438 * 20 19 17 22 22 C 1.38804 * 120.00165 * 179.97438 * 20 19 17 23 23 N 1.31620 * 120.00152 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 120.00070 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.46863 * 59.99956 * 24 22 20 26 26 H 1.48504 * 109.47220 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47439 * 300.00233 * 24 22 20 28 28 H 1.08998 * 109.47213 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46990 * 300.06614 * 1 2 3 30 30 H 1.08998 * 109.47105 * 60.06180 * 1 2 3 31 31 H 1.08999 * 109.58757 * 65.62658 * 4 2 1 32 32 H 1.09000 * 109.70486 * 305.26848 * 4 2 1 33 33 H 1.07996 * 126.06149 * 180.11153 * 11 9 8 34 34 H 1.09004 * 109.47237 * 274.97479 * 14 13 12 35 35 H 1.09000 * 109.47283 * 34.97820 * 14 13 12 36 36 H 1.09005 * 109.47289 * 154.97999 * 14 13 12 37 37 H 1.09001 * 109.58601 * 66.17746 * 15 5 4 38 38 H 1.08997 * 109.58960 * 186.60374 * 15 5 4 39 39 H 1.08999 * 109.49736 * 174.58905 * 16 15 5 40 40 H 1.09004 * 109.49292 * 294.68301 * 16 15 5 41 41 H 0.97002 * 119.99602 * 95.06973 * 19 17 16 42 42 H 0.97006 * 120.00059 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0412 -0.7235 -1.2498 5 7 3.5046 -0.8289 -1.1697 6 6 4.2811 -0.3852 -2.1781 7 8 3.7713 0.0192 -3.2058 8 6 5.7444 -0.3896 -2.0356 9 6 6.5366 0.6394 -1.5527 10 17 6.0131 2.1963 -0.9911 11 6 7.8470 0.1554 -1.6105 12 7 7.8059 -1.0575 -2.0995 13 7 6.5978 -1.4081 -2.3587 14 6 6.1955 -2.7018 -2.9162 15 6 4.1053 -1.4268 0.0304 16 6 3.5708 -0.6954 1.2658 17 6 2.0409 -0.7234 1.2482 18 1 1.6969 -1.7577 1.2348 19 7 1.5265 -0.0536 2.4453 20 6 1.3965 -0.7501 3.6171 21 1 1.6727 -1.7934 3.6586 22 6 0.9097 -0.1153 4.7514 23 7 0.5735 1.1562 4.7009 24 14 0.7316 -1.0657 6.3498 25 1 2.0594 -1.5817 6.7694 26 1 0.1951 -0.1667 7.4031 27 1 -0.2005 -2.2038 6.1478 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5149 0.8895 30 1 -0.3633 0.5129 -0.8905 31 1 1.7637 -0.1574 -2.1389 32 1 1.6053 -1.7212 -1.3010 33 1 8.7359 0.6899 -1.3098 34 1 6.2742 -2.6694 -4.0029 35 1 6.8482 -3.4836 -2.5278 36 1 5.1647 -2.9149 -2.6328 37 1 3.8375 -2.4819 0.0861 38 1 5.1895 -1.3247 -0.0141 39 1 3.9334 -1.1903 2.1668 40 1 3.9160 0.3385 1.2541 41 1 1.2782 0.8833 2.4078 42 1 0.2337 1.6000 5.4938 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036035925.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:29 Heat of formation + Delta-G solvation = 54.135126 kcal Electronic energy + Delta-G solvation = -26363.313468 eV Core-core repulsion = 22599.572031 eV Total energy + Delta-G solvation = -3763.741438 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.125 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.86910 -40.03488 -37.74467 -36.67213 -34.74066 -33.66690 -32.97760 -31.56972 -31.00040 -29.36429 -27.49925 -26.62906 -25.21385 -23.36691 -22.40565 -21.89774 -21.70221 -19.96986 -19.25791 -17.93209 -17.15711 -16.92954 -16.15793 -15.91802 -15.43485 -15.02112 -14.52053 -14.45677 -14.11195 -13.82334 -13.65393 -13.44076 -13.37542 -13.13897 -13.01940 -12.51165 -12.34637 -12.00424 -11.86315 -11.77984 -11.67057 -11.26182 -10.96193 -10.85891 -10.70959 -10.67099 -10.47090 -10.26096 -10.24913 -9.79223 -9.67847 -9.50369 -8.96477 -8.89907 -8.68853 -7.00143 -5.80178 -3.09239 1.25503 1.58275 2.14936 2.24057 2.55079 2.93682 3.40545 3.45416 3.46567 4.07423 4.20388 4.54542 4.69252 4.73174 4.93680 4.97490 5.03332 5.10281 5.16787 5.19273 5.27846 5.45280 5.49857 5.62070 5.68102 5.84525 5.90208 6.00041 6.07484 6.24143 6.26787 6.30776 6.37986 6.42676 6.55889 6.75060 6.86121 7.00224 7.20930 7.63197 7.64842 7.86226 8.37774 9.49344 10.06190 10.41086 11.42096 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.015646 B = 0.003609 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.169695 B = 7755.612065 C = 8074.101643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.111 4.111 3 H 0.072 0.928 4 C 0.121 3.879 5 N -0.588 5.588 6 C 0.589 3.411 7 O -0.523 6.523 8 C -0.001 4.001 9 C -0.116 4.116 10 Cl -0.014 7.014 11 C 0.025 3.975 12 N -0.273 5.273 13 N -0.269 5.269 14 C 0.088 3.912 15 C 0.107 3.893 16 C -0.151 4.151 17 C 0.185 3.815 18 H 0.048 0.952 19 N -0.719 5.719 20 C -0.240 4.240 21 H 0.069 0.931 22 C -0.010 4.010 23 N -0.931 5.931 24 Si 0.905 3.095 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 H 0.051 0.949 29 H 0.075 0.925 30 H 0.043 0.957 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.195 0.805 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.063 0.937 41 H 0.384 0.616 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.072 -5.966 -15.279 19.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.131 4.131 3 H 0.090 0.910 4 C -0.001 4.001 5 N -0.320 5.320 6 C 0.373 3.627 7 O -0.398 6.398 8 C -0.132 4.132 9 C -0.154 4.154 10 Cl 0.015 6.985 11 C -0.153 4.153 12 N -0.104 5.104 13 N -0.057 5.057 14 C -0.052 4.052 15 C -0.016 4.016 16 C -0.192 4.192 17 C 0.074 3.926 18 H 0.066 0.934 19 N -0.359 5.359 20 C -0.372 4.372 21 H 0.087 0.913 22 C -0.207 4.207 23 N -0.579 5.579 24 Si 0.736 3.264 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.063 0.937 31 H 0.109 0.891 32 H 0.090 0.910 33 H 0.212 0.788 34 H 0.109 0.891 35 H 0.122 0.878 36 H 0.113 0.887 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.082 0.918 41 H 0.219 0.781 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 11.325 -6.806 -15.979 20.734 hybrid contribution -0.513 0.667 1.366 1.604 sum 10.811 -6.139 -14.613 19.187 Atomic orbital electron populations 1.21656 0.93856 1.01830 1.01993 1.21759 0.96741 1.00209 0.94355 0.90981 1.21842 0.77156 1.01322 0.99827 1.48153 1.07445 1.58566 1.17811 1.16908 0.83607 0.78480 0.83742 1.90843 1.73926 1.46876 1.28182 1.21202 0.92688 0.91007 1.08267 1.21269 0.93455 0.90644 1.10068 1.98382 1.90342 1.22391 1.87403 1.23523 0.96708 0.91630 1.03460 1.73228 1.02859 1.15976 1.18308 1.45474 1.02645 1.12750 1.44830 1.22260 1.02550 0.80006 1.00375 1.21919 0.97531 0.97315 0.84852 1.22692 1.00389 1.00698 0.95402 1.20181 0.90209 0.95675 0.86488 0.93403 1.42383 1.76408 1.11455 1.05695 1.19147 1.36226 0.94051 0.87731 0.91329 1.24716 1.01957 0.95978 0.98000 1.69648 1.49791 1.09457 1.29007 0.86314 0.77734 0.78732 0.83641 1.21326 1.21726 1.21307 0.93000 0.90611 0.93745 0.89090 0.90976 0.78766 0.89148 0.87829 0.88714 0.91087 0.90950 0.90445 0.91773 0.78150 0.93438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.02 37.16 0.34 -1.76 16 2 C -0.11 -1.74 2.46 -90.50 -0.22 -1.96 16 3 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 4 C 0.12 1.62 5.70 -3.71 -0.02 1.60 16 5 N -0.59 -7.93 2.97 -174.18 -0.52 -8.45 16 6 C 0.59 8.56 6.79 -12.70 -0.09 8.48 16 7 O -0.52 -9.03 16.54 5.24 0.09 -8.94 16 8 C 0.00 -0.02 4.65 -82.00 -0.38 -0.40 16 9 C -0.12 -1.53 6.89 -38.88 -0.27 -1.80 16 10 Cl -0.01 -0.19 29.24 -51.86 -1.52 -1.70 16 11 C 0.03 0.28 12.04 -17.39 -0.21 0.07 16 12 N -0.27 -3.19 11.89 30.61 0.36 -2.82 16 13 N -0.27 -3.01 3.75 -63.85 -0.24 -3.25 16 14 C 0.09 0.62 11.22 59.85 0.67 1.29 16 15 C 0.11 1.38 6.35 -3.71 -0.02 1.35 16 16 C -0.15 -2.46 5.66 -26.61 -0.15 -2.62 16 17 C 0.19 3.34 2.19 -67.89 -0.15 3.19 16 18 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 19 N -0.72 -16.79 4.41 -53.39 -0.24 -17.02 16 20 C -0.24 -6.30 9.93 -15.06 -0.15 -6.45 16 21 H 0.07 1.74 7.83 -52.48 -0.41 1.33 16 22 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 23 N -0.93 -27.26 13.06 55.49 0.72 -26.53 16 24 Si 0.90 21.72 29.55 -169.99 -5.02 16.69 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 27 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 1.39 7.36 -51.92 -0.38 1.01 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.09 1.27 7.04 -51.93 -0.37 0.90 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.20 1.57 8.06 -52.49 -0.42 1.14 16 34 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.09 0.62 7.66 -51.93 -0.40 0.22 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.91 6.32 -51.93 -0.33 0.58 16 39 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 40 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 41 H 0.38 9.75 7.50 -40.82 -0.31 9.45 16 42 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 362.58 15.07 5.46 5.46 Total: -1.00 -31.69 362.58 -7.62 -39.31 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -5.97 Total: 6.61 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -0.75 Total: 0.64 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: 0.10 Total: -58.08 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.09 Total: -8.94 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -1.52 Total: -1.70 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.69 -7.62 -39.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036035925.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.444 kcal (2) G-P(sol) polarization free energy of solvation -31.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds