Wall clock time and date at job start Tue Mar 31 2020 16:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.50093 * 2 1 4 4 C 1.53190 * 109.49535 * 239.93363 * 2 1 3 5 5 N 1.46932 * 108.77224 * 185.41507 * 4 2 1 6 6 C 1.34782 * 120.62651 * 233.62396 * 5 4 2 7 7 O 1.21641 * 120.00327 * 354.70334 * 6 5 4 8 8 C 1.47025 * 119.99563 * 174.69060 * 6 5 4 9 9 C 1.38545 * 126.91102 * 268.93238 * 8 6 5 10 10 Cl 1.73597 * 127.33346 * 0.02562 * 9 8 6 11 11 C 1.39811 * 105.33055 * 179.86185 * 9 8 6 12 12 N 1.30841 * 107.87169 * 0.41119 * 11 9 8 13 13 N 1.28431 * 110.98077 * 359.73686 * 12 11 9 14 14 C 1.46501 * 125.18283 * 179.97438 * 13 12 11 15 15 C 1.46921 * 118.74159 * 53.61031 * 5 4 2 16 16 C 1.53195 * 108.77399 * 306.39055 * 15 5 4 17 17 C 1.53033 * 109.31333 * 54.63430 * 16 15 5 18 18 H 1.09006 * 109.45234 * 58.65037 * 17 16 15 19 19 N 1.46501 * 109.46223 * 178.61402 * 17 16 15 20 20 C 1.36935 * 120.00331 * 275.07338 * 19 17 16 21 21 H 1.08004 * 119.99607 * 359.97438 * 20 19 17 22 22 C 1.38804 * 120.00165 * 179.97438 * 20 19 17 23 23 N 1.31620 * 120.00152 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 120.00070 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.46863 * 59.99956 * 24 22 20 26 26 H 1.48504 * 109.47220 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47439 * 300.00233 * 24 22 20 28 28 H 1.08998 * 109.47213 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46990 * 300.06614 * 1 2 3 30 30 H 1.08998 * 109.47105 * 60.06180 * 1 2 3 31 31 H 1.08999 * 109.58757 * 65.62658 * 4 2 1 32 32 H 1.09000 * 109.70486 * 305.26848 * 4 2 1 33 33 H 1.07996 * 126.06149 * 180.11153 * 11 9 8 34 34 H 1.09004 * 109.47237 * 274.97479 * 14 13 12 35 35 H 1.09000 * 109.47283 * 34.97820 * 14 13 12 36 36 H 1.09005 * 109.47289 * 154.97999 * 14 13 12 37 37 H 1.09001 * 109.58601 * 66.17746 * 15 5 4 38 38 H 1.08997 * 109.58960 * 186.60374 * 15 5 4 39 39 H 1.08999 * 109.49736 * 174.58905 * 16 15 5 40 40 H 1.09004 * 109.49292 * 294.68301 * 16 15 5 41 41 H 0.97002 * 119.99602 * 95.06973 * 19 17 16 42 42 H 0.97006 * 120.00059 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0412 -0.7235 -1.2498 5 7 3.5046 -0.8289 -1.1697 6 6 4.2811 -0.3852 -2.1781 7 8 3.7713 0.0192 -3.2058 8 6 5.7444 -0.3896 -2.0356 9 6 6.5366 0.6394 -1.5527 10 17 6.0131 2.1963 -0.9911 11 6 7.8470 0.1554 -1.6105 12 7 7.8059 -1.0575 -2.0995 13 7 6.5978 -1.4081 -2.3587 14 6 6.1955 -2.7018 -2.9162 15 6 4.1053 -1.4268 0.0304 16 6 3.5708 -0.6954 1.2658 17 6 2.0409 -0.7234 1.2482 18 1 1.6969 -1.7577 1.2348 19 7 1.5265 -0.0536 2.4453 20 6 1.3965 -0.7501 3.6171 21 1 1.6727 -1.7934 3.6586 22 6 0.9097 -0.1153 4.7514 23 7 0.5735 1.1562 4.7009 24 14 0.7316 -1.0657 6.3498 25 1 2.0594 -1.5817 6.7694 26 1 0.1951 -0.1667 7.4031 27 1 -0.2005 -2.2038 6.1478 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5149 0.8895 30 1 -0.3633 0.5129 -0.8905 31 1 1.7637 -0.1574 -2.1389 32 1 1.6053 -1.7212 -1.3010 33 1 8.7359 0.6899 -1.3098 34 1 6.2742 -2.6694 -4.0029 35 1 6.8482 -3.4836 -2.5278 36 1 5.1647 -2.9149 -2.6328 37 1 3.8375 -2.4819 0.0861 38 1 5.1895 -1.3247 -0.0141 39 1 3.9334 -1.1903 2.1668 40 1 3.9160 0.3385 1.2541 41 1 1.2782 0.8833 2.4078 42 1 0.2337 1.6000 5.4938 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036035925.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:28 Heat of formation + Delta-G solvation = 34.091087 kcal Electronic energy + Delta-G solvation = -26364.182643 eV Core-core repulsion = 22599.572031 eV Total energy + Delta-G solvation = -3764.610613 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.125 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.75990 -41.21013 -39.07589 -37.68182 -36.25754 -34.60435 -34.35129 -33.11582 -32.01331 -31.02459 -28.23227 -27.76583 -26.79701 -24.89005 -23.52672 -23.10866 -22.79907 -21.19066 -20.38641 -19.10095 -18.90351 -17.99300 -17.08574 -16.93409 -16.73867 -16.50063 -15.76826 -15.58447 -15.42317 -15.34263 -14.93519 -14.67405 -14.38978 -14.09628 -13.97175 -13.71550 -13.61634 -13.21991 -12.97526 -12.93191 -12.82162 -12.80248 -12.74968 -12.50576 -12.19159 -12.08853 -11.84407 -11.68039 -11.64829 -11.41370 -11.16278 -10.85681 -10.36931 -9.87946 -9.86301 -8.95139 -7.88922 -5.16500 0.30110 0.67800 1.07877 1.35485 1.50107 1.51789 1.54986 1.57674 1.98031 2.59612 3.06179 3.44240 3.46261 3.75829 3.77504 3.92403 3.94096 4.03676 4.20615 4.23398 4.27843 4.32722 4.35136 4.46950 4.53064 4.63468 4.74064 4.76334 4.78790 4.93879 5.00246 5.06650 5.16799 5.26652 5.38407 5.48530 5.50086 5.56822 5.61124 6.07937 6.32114 6.73617 6.76091 7.39020 8.15185 8.37950 9.34421 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.015646 B = 0.003609 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.169695 B = 7755.612065 C = 8074.101643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.101 4.101 3 H 0.051 0.949 4 C 0.127 3.873 5 N -0.585 5.585 6 C 0.595 3.405 7 O -0.553 6.553 8 C -0.018 4.018 9 C -0.132 4.132 10 Cl -0.027 7.027 11 C 0.026 3.974 12 N -0.275 5.275 13 N -0.261 5.261 14 C 0.075 3.925 15 C 0.119 3.881 16 C -0.141 4.141 17 C 0.181 3.819 18 H 0.055 0.945 19 N -0.731 5.731 20 C -0.231 4.231 21 H 0.079 0.921 22 C -0.074 4.074 23 N -0.971 5.971 24 Si 0.966 3.034 25 H -0.279 1.279 26 H -0.302 1.302 27 H -0.278 1.278 28 H 0.062 0.938 29 H 0.039 0.961 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.221 0.779 34 H 0.102 0.898 35 H 0.127 0.873 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.042 0.958 41 H 0.370 0.630 42 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.154 -8.452 -16.373 22.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.121 4.121 3 H 0.069 0.931 4 C 0.005 3.995 5 N -0.315 5.315 6 C 0.380 3.620 7 O -0.431 6.431 8 C -0.149 4.149 9 C -0.170 4.170 10 Cl 0.002 6.998 11 C -0.151 4.151 12 N -0.106 5.106 13 N -0.050 5.050 14 C -0.063 4.063 15 C -0.004 4.004 16 C -0.182 4.182 17 C 0.073 3.927 18 H 0.073 0.927 19 N -0.370 5.370 20 C -0.362 4.362 21 H 0.097 0.903 22 C -0.267 4.267 23 N -0.622 5.622 24 Si 0.796 3.204 25 H -0.206 1.206 26 H -0.229 1.229 27 H -0.204 1.204 28 H 0.081 0.919 29 H 0.058 0.942 30 H 0.084 0.916 31 H 0.108 0.892 32 H 0.117 0.883 33 H 0.238 0.762 34 H 0.121 0.879 35 H 0.145 0.855 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.061 0.939 41 H 0.202 0.798 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 12.438 -9.356 -17.104 23.126 hybrid contribution -0.809 1.402 1.614 2.285 sum 11.629 -7.954 -15.490 20.940 Atomic orbital electron populations 1.21568 0.93544 1.02299 1.01278 1.21621 0.96944 0.99098 0.94465 0.93065 1.21798 0.77222 1.02398 0.98080 1.48160 1.07449 1.58206 1.17730 1.17004 0.84116 0.77588 0.83325 1.90827 1.74638 1.48182 1.29430 1.21080 0.92229 0.92099 1.09519 1.21479 0.94407 0.90289 1.10872 1.98375 1.90527 1.23339 1.87598 1.23956 0.96883 0.91510 1.02790 1.73250 1.02969 1.16094 1.18328 1.45865 1.02045 1.13260 1.43796 1.22661 1.03579 0.78807 1.01231 1.21858 0.97805 0.98080 0.82634 1.22465 0.98831 0.99914 0.96960 1.20417 0.91126 0.95649 0.85531 0.92704 1.42578 1.76756 1.10899 1.06728 1.19554 1.33785 0.94431 0.88478 0.90341 1.25455 1.03186 0.96826 1.01184 1.69814 1.52010 1.11113 1.29236 0.85325 0.77849 0.77412 0.79851 1.20575 1.22854 1.20391 0.91865 0.94165 0.91605 0.89182 0.88258 0.76218 0.87913 0.85484 0.87976 0.88143 0.90146 0.91512 0.93906 0.79811 0.94339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.89 9.02 71.98 0.65 -3.24 16 2 C -0.10 -3.10 2.46 -10.72 -0.03 -3.13 16 3 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 4 C 0.13 3.14 5.70 86.36 0.49 3.63 16 5 N -0.58 -14.55 2.97 -823.23 -2.45 -17.00 16 6 C 0.59 16.34 6.79 86.55 0.59 16.93 16 7 O -0.55 -18.46 16.54 -4.16 -0.07 -18.53 16 8 C -0.02 -0.45 4.65 40.76 0.19 -0.26 16 9 C -0.13 -3.31 6.89 22.72 0.16 -3.16 16 10 Cl -0.03 -0.72 29.24 -2.72 -0.08 -0.80 16 11 C 0.03 0.53 12.04 85.22 1.03 1.55 16 12 N -0.28 -5.74 11.89 -57.06 -0.68 -6.42 16 13 N -0.26 -5.19 3.75 -355.91 -1.34 -6.53 16 14 C 0.08 0.83 11.22 127.77 1.43 2.26 16 15 C 0.12 2.76 6.35 86.36 0.55 3.31 16 16 C -0.14 -4.47 5.66 30.67 0.17 -4.30 16 17 C 0.18 6.40 2.19 45.02 0.10 6.50 16 18 H 0.05 1.89 8.08 -2.38 -0.02 1.87 16 19 N -0.73 -34.50 4.41 -322.81 -1.42 -35.92 16 20 C -0.23 -12.04 9.93 84.03 0.83 -11.21 16 21 H 0.08 3.87 7.83 -2.91 -0.02 3.85 16 22 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 23 N -0.97 -58.40 13.06 21.65 0.28 -58.11 16 24 Si 0.97 44.89 29.55 68.60 2.03 46.91 16 25 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 26 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 27 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 28 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.04 1.50 7.36 -2.38 -0.02 1.48 16 30 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.09 2.33 7.04 -2.39 -0.02 2.32 16 32 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.22 3.05 8.06 -2.91 -0.02 3.02 16 34 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.10 0.99 7.66 -2.38 -0.02 0.97 16 37 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.08 1.81 6.32 -2.39 -0.02 1.80 16 39 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.04 1.53 8.14 -2.39 -0.02 1.52 16 41 H 0.37 19.45 7.50 -92.71 -0.70 18.76 16 42 H 0.25 14.66 8.31 -92.70 -0.77 13.89 16 Total: -1.00 -69.29 362.58 3.25 -66.04 By element: Atomic # 1 Polarization: 24.79 SS G_CDS: 0.35 Total: 25.13 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: 6.63 Total: 5.22 kcal Atomic # 7 Polarization: -118.38 SS G_CDS: -5.60 Total: -123.98 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.07 Total: -18.53 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -0.08 Total: -0.80 kcal Total: -69.29 3.25 -66.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036035925.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.131 kcal (2) G-P(sol) polarization free energy of solvation -69.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds