Wall clock time and date at job start Tue Mar 31 2020 14:34:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.52999 * 109.47428 * 2 1
4 4 H 1.09008 * 109.49332 * 304.93546 * 3 2 1
5 5 C 1.53193 * 109.49863 * 64.99511 * 3 2 1
6 6 N 1.46929 * 108.77315 * 174.58796 * 5 3 2
7 7 C 1.34774 * 120.62565 * 126.41570 * 6 5 3
8 8 O 1.21734 * 120.00413 * 354.33652 * 7 6 5
9 9 C 1.46294 * 119.99761 * 174.33211 * 7 6 5
10 10 S 1.75823 * 125.46828 * 319.12679 * 9 7 6
11 11 C 1.70595 * 91.60933 * 179.97438 * 10 9 7
12 12 C 1.33738 * 111.04091 * 359.97438 * 11 10 9
13 13 C 1.36933 * 125.45941 * 138.81520 * 9 7 6
14 14 F 1.35096 * 123.40683 * 0.02562 * 13 9 7
15 15 C 1.46923 * 118.74281 * 306.39717 * 6 5 3
16 16 C 1.53189 * 108.77534 * 53.60331 * 15 6 5
17 17 C 1.53032 * 109.31830 * 305.36815 * 16 15 6
18 18 H 1.09004 * 109.46457 * 301.34579 * 17 16 15
19 19 N 1.46503 * 109.46396 * 181.38463 * 17 16 15
20 20 C 1.36931 * 119.99974 * 84.93234 * 19 17 16
21 21 H 1.08007 * 119.99727 * 359.97438 * 20 19 17
22 22 C 1.38805 * 120.00256 * 180.02562 * 20 19 17
23 23 N 1.31623 * 120.00728 * 180.02562 * 22 20 19
24 24 Si 1.86801 * 120.00073 * 359.97438 * 22 20 19
25 25 H 1.48493 * 109.47249 * 89.99959 * 24 22 20
26 26 H 1.48497 * 109.47458 * 210.00489 * 24 22 20
27 27 H 1.48507 * 109.46998 * 330.00436 * 24 22 20
28 28 H 1.08999 * 109.47103 * 60.00373 * 1 2 3
29 29 H 1.08998 * 109.47259 * 299.99926 * 1 2 3
30 30 H 1.08999 * 109.47057 * 180.02562 * 1 2 3
31 31 H 1.09005 * 109.47303 * 119.99989 * 2 1 3
32 32 H 1.09003 * 109.47490 * 239.99654 * 2 1 3
33 33 H 1.09002 * 109.58820 * 294.37778 * 5 3 2
34 34 H 1.08998 * 109.58255 * 54.66632 * 5 3 2
35 35 H 1.08000 * 124.48425 * 180.02562 * 11 10 9
36 36 H 1.07997 * 122.45300 * 179.97438 * 12 11 10
37 37 H 1.08994 * 109.58789 * 173.39595 * 15 6 5
38 38 H 1.09007 * 109.58405 * 293.67957 * 15 6 5
39 39 H 1.09004 * 109.49334 * 65.32608 * 16 15 6
40 40 H 1.09001 * 109.49777 * 185.38546 * 16 15 6
41 41 H 0.96999 * 120.00124 * 264.93486 * 19 17 16
42 42 H 0.97001 * 120.00593 * 179.97438 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6065 1.9816 -0.8424
5 6 1.6350 2.1280 1.3087
6 7 2.2416 3.4657 1.3492
7 6 1.4816 4.5579 1.5635
8 8 0.2702 4.4545 1.6230
9 6 2.1127 5.8679 1.7248
10 16 3.5848 6.1864 2.6319
11 6 3.5113 7.8497 2.2600
12 6 2.4440 8.1257 1.5030
13 6 1.6549 7.0416 1.1884
14 9 0.5401 7.1281 0.4302
15 6 3.6922 3.5899 1.1520
16 6 4.0741 2.8879 -0.1549
17 6 3.5656 1.4449 -0.1217
18 1 3.9989 0.9267 0.7338
19 7 3.9578 0.7606 -1.3563
20 6 5.1961 0.1848 -1.4562
21 1 5.8839 0.2355 -0.6249
22 6 5.5680 -0.4631 -2.6261
23 7 6.7581 -1.0170 -2.7221
24 14 4.3789 -0.5501 -4.0641
25 1 4.5811 0.6277 -4.9457
26 1 4.6256 -1.7944 -4.8360
27 1 2.9843 -0.5525 -3.5537
28 1 -0.3633 0.5138 -0.8900
29 1 -0.3634 0.5138 0.8900
30 1 -0.3633 -1.0277 0.0005
31 1 1.8933 -0.5138 0.8900
32 1 1.8934 -0.5139 -0.8900
33 1 0.5496 2.2174 1.3538
34 1 1.9886 1.5385 2.1546
35 1 4.2320 8.5827 2.5913
36 1 2.2190 9.1251 1.1609
37 1 3.9641 4.6438 1.0938
38 1 4.2157 3.1231 1.9865
39 1 3.6220 3.4138 -0.9958
40 1 5.1585 2.8895 -0.2653
41 1 3.3403 0.7155 -2.1030
42 1 7.0178 -1.4701 -3.5395
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001037838556.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:34:50
Heat of formation + Delta-G solvation = -32.106589 kcal
Electronic energy + Delta-G solvation = -26106.683878 eV
Core-core repulsion = 22321.326464 eV
Total energy + Delta-G solvation = -3785.357414 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 326.121 amu
Computer time = 1.58 seconds
Orbital eigenvalues (eV)
-49.06304 -40.27135 -38.17338 -37.34743 -34.92316 -33.93419 -31.83006 -30.55432
-29.95617 -28.70321 -25.84390 -24.58609 -24.03254 -22.61805 -21.19954 -20.86660
-19.95925 -19.58106 -18.34368 -17.55186 -16.99484 -16.66344 -15.96688 -15.65036
-15.08842 -14.90931 -14.74298 -14.35301 -14.25411 -13.90262 -13.82413 -13.41174
-13.30182 -13.05746 -12.86204 -12.69160 -12.40251 -12.23316 -11.93382 -11.86790
-11.46200 -11.41276 -11.06094 -11.03062 -10.82276 -10.46060 -10.34901 -10.23258
-10.07276 -9.78325 -9.60757 -9.23953 -8.98728 -8.69282 -8.61130 -7.30579
-5.81073 -3.16583 0.12595 0.93553 1.41888 1.90842 2.70405 3.02987
3.34946 3.38655 3.43705 3.98578 4.32629 4.55838 4.62056 4.87252
4.92376 5.00706 5.09642 5.17650 5.27616 5.33540 5.43308 5.46529
5.49817 5.56297 5.56922 5.76285 5.88325 5.95926 5.97569 6.00712
6.06287 6.21989 6.24360 6.31618 6.41584 6.51947 6.68196 6.76327
6.90849 7.30547 7.94259 8.01954 8.38032 9.16224 9.89173 10.09061
11.37136
Molecular weight = 326.12amu
Principal moments of inertia in cm(-1)
A = 0.015204 B = 0.003754 C = 0.003392
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1841.189510 B = 7456.757938 C = 8251.805698
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C -0.113 4.113
3 C -0.109 4.109
4 H 0.070 0.930
5 C 0.121 3.879
6 N -0.599 5.599
7 C 0.591 3.409
8 O -0.528 6.528
9 C -0.309 4.309
10 S 0.277 5.723
11 C -0.224 4.224
12 C -0.175 4.175
13 C 0.151 3.849
14 F -0.110 7.110
15 C 0.096 3.904
16 C -0.149 4.149
17 C 0.189 3.811
18 H 0.058 0.942
19 N -0.744 5.744
20 C -0.243 4.243
21 H 0.091 0.909
22 C 0.007 3.993
23 N -0.933 5.933
24 Si 0.881 3.119
25 H -0.285 1.285
26 H -0.291 1.291
27 H -0.276 1.276
28 H 0.050 0.950
29 H 0.052 0.948
30 H 0.051 0.949
31 H 0.063 0.937
32 H 0.078 0.922
33 H 0.093 0.907
34 H 0.072 0.928
35 H 0.179 0.821
36 H 0.157 0.843
37 H 0.079 0.921
38 H 0.075 0.925
39 H 0.059 0.941
40 H 0.084 0.916
41 H 0.361 0.639
42 H 0.259 0.741
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.386 16.009 12.533 21.631
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C -0.151 4.151
3 C -0.129 4.129
4 H 0.088 0.912
5 C -0.001 4.001
6 N -0.331 5.331
7 C 0.378 3.622
8 O -0.406 6.406
9 C -0.431 4.431
10 S 0.544 5.456
11 C -0.362 4.362
12 C -0.207 4.207
13 C 0.117 3.883
14 F -0.088 7.088
15 C -0.028 4.028
16 C -0.190 4.190
17 C 0.079 3.921
18 H 0.076 0.924
19 N -0.386 5.386
20 C -0.373 4.373
21 H 0.108 0.892
22 C -0.189 4.189
23 N -0.581 5.581
24 Si 0.711 3.289
25 H -0.212 1.212
26 H -0.218 1.218
27 H -0.203 1.203
28 H 0.069 0.931
29 H 0.071 0.929
30 H 0.070 0.930
31 H 0.081 0.919
32 H 0.096 0.904
33 H 0.112 0.888
34 H 0.090 0.910
35 H 0.197 0.803
36 H 0.174 0.826
37 H 0.097 0.903
38 H 0.093 0.907
39 H 0.078 0.922
40 H 0.102 0.898
41 H 0.194 0.806
42 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges -6.814 14.949 13.413 21.209
hybrid contribution -1.739 1.063 -2.251 3.037
sum -8.553 16.012 11.162 21.311
Atomic orbital electron populations
1.21855 0.96599 1.01193 1.01496 1.21462 0.94577 0.95551 1.03493
1.21844 0.97655 0.96377 0.97053 0.91154 1.21787 0.99633 0.80741
0.97912 1.48019 1.08653 1.06493 1.69972 1.16707 0.86200 0.82175
0.77150 1.90843 1.13095 1.85271 1.51344 1.24604 1.05769 0.98115
1.14597 1.83352 1.17225 0.98458 1.46577 1.25236 1.03104 1.03139
1.04731 1.19806 0.96534 1.00263 1.04086 1.16838 0.85531 0.92004
0.93930 1.91559 1.48292 1.96618 1.72362 1.22180 0.79185 1.01581
0.99871 1.22632 1.02769 0.98717 0.94914 1.20161 0.90631 0.90563
0.90776 0.92375 1.42772 1.16539 1.66197 1.13114 1.19042 0.90391
1.27361 1.00463 0.89160 1.24638 0.96373 1.00208 0.97649 1.69693
1.19264 1.41518 1.27620 0.86613 0.81174 0.77340 0.83753 1.21180
1.21775 1.20253 0.93054 0.92930 0.93012 0.91875 0.90366 0.88839
0.91026 0.80317 0.82592 0.90264 0.90676 0.92184 0.89764 0.80575
0.93054
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.00 9.67 37.16 0.36 -1.64 16
2 C -0.11 -1.70 5.31 -26.73 -0.14 -1.84 16
3 C -0.11 -1.69 1.93 -90.50 -0.17 -1.86 16
4 H 0.07 1.17 8.14 -51.92 -0.42 0.75 16
5 C 0.12 1.68 5.33 -3.71 -0.02 1.66 16
6 N -0.60 -8.36 2.97 -174.45 -0.52 -8.88 16
7 C 0.59 9.05 7.47 -13.02 -0.10 8.96 16
8 O -0.53 -9.76 16.34 5.16 0.08 -9.68 16
9 C -0.31 -3.91 5.39 -36.82 -0.20 -4.11 16
10 S 0.28 2.31 20.05 -107.50 -2.16 0.15 16
11 C -0.22 -1.56 10.91 29.15 0.32 -1.25 16
12 C -0.17 -1.54 10.15 -41.35 -0.42 -1.96 16
13 C 0.15 1.88 7.47 -40.24 -0.30 1.58 16
14 F -0.11 -1.61 17.09 2.25 0.04 -1.57 16
15 C 0.10 1.20 5.62 -3.71 -0.02 1.18 16
16 C -0.15 -2.35 5.66 -26.62 -0.15 -2.51 16
17 C 0.19 3.32 2.19 -67.89 -0.15 3.18 16
18 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16
19 N -0.74 -16.47 4.14 -53.39 -0.22 -16.69 16
20 C -0.24 -6.45 10.41 -15.06 -0.16 -6.61 16
21 H 0.09 2.56 8.06 -52.48 -0.42 2.14 16
22 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16
23 N -0.93 -28.49 13.97 55.49 0.78 -27.72 16
24 Si 0.88 21.67 27.74 -169.99 -4.71 16.96 16
25 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16
26 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16
27 H -0.28 -6.41 6.52 56.52 0.37 -6.04 16
28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16
29 H 0.05 0.63 6.70 -51.93 -0.35 0.29 16
30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16
31 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16
32 H 0.08 1.38 7.22 -51.93 -0.37 1.00 16
33 H 0.09 1.36 5.71 -51.93 -0.30 1.06 16
34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16
35 H 0.18 0.67 8.06 -52.49 -0.42 0.25 16
36 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16
37 H 0.08 0.88 4.53 -37.37 -0.17 0.71 16
38 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16
39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16
40 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16
41 H 0.36 8.09 5.37 -40.82 -0.22 7.87 16
42 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16
LS Contribution 351.28 15.07 5.29 5.29
Total: -1.00 -32.59 351.28 -8.31 -40.90
By element:
Atomic # 1 Polarization: 11.99 SS G_CDS: -5.65 Total: 6.34 kcal
Atomic # 6 Polarization: -3.87 SS G_CDS: -1.25 Total: -5.12 kcal
Atomic # 7 Polarization: -53.33 SS G_CDS: 0.04 Total: -53.29 kcal
Atomic # 8 Polarization: -9.76 SS G_CDS: 0.08 Total: -9.68 kcal
Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal
Atomic # 14 Polarization: 21.67 SS G_CDS: -4.71 Total: 16.96 kcal
Atomic # 16 Polarization: 2.31 SS G_CDS: -2.16 Total: 0.15 kcal
Total LS contribution 5.29 Total: 5.29 kcal
Total: -32.59 -8.31 -40.90 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001037838556.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 8.797 kcal
(2) G-P(sol) polarization free energy of solvation -32.592 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.795 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.312 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.904 kcal
(6) G-S(sol) free energy of system = (1) + (5) -32.107 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.58 seconds