Wall clock time and date at job start Tue Mar 31 2020 14:34:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.52999 * 109.47428 * 2 1
4 4 H 1.09008 * 109.49332 * 304.93546 * 3 2 1
5 5 C 1.53193 * 109.49863 * 64.99511 * 3 2 1
6 6 N 1.46929 * 108.77315 * 174.58796 * 5 3 2
7 7 C 1.34774 * 120.62565 * 126.41570 * 6 5 3
8 8 O 1.21734 * 120.00413 * 354.33652 * 7 6 5
9 9 C 1.46294 * 119.99761 * 174.33211 * 7 6 5
10 10 S 1.75823 * 125.46828 * 319.12679 * 9 7 6
11 11 C 1.70595 * 91.60933 * 179.97438 * 10 9 7
12 12 C 1.33738 * 111.04091 * 359.97438 * 11 10 9
13 13 C 1.36933 * 125.45941 * 138.81520 * 9 7 6
14 14 F 1.35096 * 123.40683 * 0.02562 * 13 9 7
15 15 C 1.46923 * 118.74281 * 306.39717 * 6 5 3
16 16 C 1.53189 * 108.77534 * 53.60331 * 15 6 5
17 17 C 1.53032 * 109.31830 * 305.36815 * 16 15 6
18 18 H 1.09004 * 109.46457 * 301.34579 * 17 16 15
19 19 N 1.46503 * 109.46396 * 181.38463 * 17 16 15
20 20 C 1.36931 * 119.99974 * 84.93234 * 19 17 16
21 21 H 1.08007 * 119.99727 * 359.97438 * 20 19 17
22 22 C 1.38805 * 120.00256 * 180.02562 * 20 19 17
23 23 N 1.31623 * 120.00728 * 180.02562 * 22 20 19
24 24 Si 1.86801 * 120.00073 * 359.97438 * 22 20 19
25 25 H 1.48493 * 109.47249 * 89.99959 * 24 22 20
26 26 H 1.48497 * 109.47458 * 210.00489 * 24 22 20
27 27 H 1.48507 * 109.46998 * 330.00436 * 24 22 20
28 28 H 1.08999 * 109.47103 * 60.00373 * 1 2 3
29 29 H 1.08998 * 109.47259 * 299.99926 * 1 2 3
30 30 H 1.08999 * 109.47057 * 180.02562 * 1 2 3
31 31 H 1.09005 * 109.47303 * 119.99989 * 2 1 3
32 32 H 1.09003 * 109.47490 * 239.99654 * 2 1 3
33 33 H 1.09002 * 109.58820 * 294.37778 * 5 3 2
34 34 H 1.08998 * 109.58255 * 54.66632 * 5 3 2
35 35 H 1.08000 * 124.48425 * 180.02562 * 11 10 9
36 36 H 1.07997 * 122.45300 * 179.97438 * 12 11 10
37 37 H 1.08994 * 109.58789 * 173.39595 * 15 6 5
38 38 H 1.09007 * 109.58405 * 293.67957 * 15 6 5
39 39 H 1.09004 * 109.49334 * 65.32608 * 16 15 6
40 40 H 1.09001 * 109.49777 * 185.38546 * 16 15 6
41 41 H 0.96999 * 120.00124 * 264.93486 * 19 17 16
42 42 H 0.97001 * 120.00593 * 179.97438 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6065 1.9816 -0.8424
5 6 1.6350 2.1280 1.3087
6 7 2.2416 3.4657 1.3492
7 6 1.4816 4.5579 1.5635
8 8 0.2702 4.4545 1.6230
9 6 2.1127 5.8679 1.7248
10 16 3.5848 6.1864 2.6319
11 6 3.5113 7.8497 2.2600
12 6 2.4440 8.1257 1.5030
13 6 1.6549 7.0416 1.1884
14 9 0.5401 7.1281 0.4302
15 6 3.6922 3.5899 1.1520
16 6 4.0741 2.8879 -0.1549
17 6 3.5656 1.4449 -0.1217
18 1 3.9989 0.9267 0.7338
19 7 3.9578 0.7606 -1.3563
20 6 5.1961 0.1848 -1.4562
21 1 5.8839 0.2355 -0.6249
22 6 5.5680 -0.4631 -2.6261
23 7 6.7581 -1.0170 -2.7221
24 14 4.3789 -0.5501 -4.0641
25 1 4.5811 0.6277 -4.9457
26 1 4.6256 -1.7944 -4.8360
27 1 2.9843 -0.5525 -3.5537
28 1 -0.3633 0.5138 -0.8900
29 1 -0.3634 0.5138 0.8900
30 1 -0.3633 -1.0277 0.0005
31 1 1.8933 -0.5138 0.8900
32 1 1.8934 -0.5139 -0.8900
33 1 0.5496 2.2174 1.3538
34 1 1.9886 1.5385 2.1546
35 1 4.2320 8.5827 2.5913
36 1 2.2190 9.1251 1.1609
37 1 3.9641 4.6438 1.0938
38 1 4.2157 3.1231 1.9865
39 1 3.6220 3.4138 -0.9958
40 1 5.1585 2.8895 -0.2653
41 1 3.3403 0.7155 -2.1030
42 1 7.0178 -1.4701 -3.5395
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001037838556.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:34:45
Heat of formation + Delta-G solvation = -52.440681 kcal
Electronic energy + Delta-G solvation = -26107.565631 eV
Core-core repulsion = 22321.326464 eV
Total energy + Delta-G solvation = -3786.239167 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 326.121 amu
Computer time = -2.77 seconds
Orbital eigenvalues (eV)
-50.04674 -41.44344 -39.37060 -38.22368 -36.36152 -35.40765 -33.63400 -31.68314
-31.34676 -29.83695 -27.06163 -25.73539 -25.17365 -24.19472 -22.35429 -22.07266
-21.22362 -20.55262 -19.64710 -19.14448 -17.95746 -17.77283 -17.01773 -16.78449
-16.54311 -16.09324 -16.02523 -15.61329 -15.28038 -15.05131 -14.96412 -14.74777
-14.59810 -14.41318 -14.19395 -13.97337 -13.71217 -13.32933 -13.11940 -12.95985
-12.86150 -12.74121 -12.59952 -12.24477 -12.08245 -12.02918 -11.85552 -11.66057
-11.58340 -11.27597 -11.15906 -10.89723 -10.06720 -9.76290 -9.44599 -9.23526
-7.99190 -5.30684 -0.65905 0.18422 0.75422 1.15818 1.38392 1.38873
1.46080 1.62176 1.96206 2.49479 3.24399 3.30929 3.33707 3.52728
3.69484 3.89663 3.93435 3.95349 4.14108 4.25391 4.32724 4.37828
4.42085 4.57227 4.62452 4.69468 4.72772 4.75983 4.81512 4.84675
4.96846 4.99322 5.12759 5.19298 5.23322 5.29504 5.41138 5.45865
5.58534 5.81668 6.18756 6.25085 6.89311 7.10817 7.87685 8.05812
9.22225
Molecular weight = 326.12amu
Principal moments of inertia in cm(-1)
A = 0.015204 B = 0.003754 C = 0.003392
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1841.189510 B = 7456.757938 C = 8251.805698
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.110 4.110
3 C -0.098 4.098
4 H 0.056 0.944
5 C 0.125 3.875
6 N -0.599 5.599
7 C 0.588 3.412
8 O -0.571 6.571
9 C -0.355 4.355
10 S 0.327 5.673
11 C -0.197 4.197
12 C -0.188 4.188
13 C 0.133 3.867
14 F -0.133 7.133
15 C 0.102 3.898
16 C -0.142 4.142
17 C 0.183 3.817
18 H 0.057 0.943
19 N -0.747 5.747
20 C -0.216 4.216
21 H 0.067 0.933
22 C -0.058 4.058
23 N -0.983 5.983
24 Si 0.941 3.059
25 H -0.285 1.285
26 H -0.299 1.299
27 H -0.256 1.256
28 H 0.045 0.955
29 H 0.063 0.937
30 H 0.063 0.937
31 H 0.071 0.929
32 H 0.051 0.949
33 H 0.088 0.912
34 H 0.092 0.908
35 H 0.221 0.779
36 H 0.178 0.822
37 H 0.098 0.902
38 H 0.099 0.901
39 H 0.047 0.953
40 H 0.074 0.926
41 H 0.361 0.639
42 H 0.255 0.745
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.476 17.960 14.131 24.045
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.149 4.149
3 C -0.118 4.118
4 H 0.074 0.926
5 C 0.003 3.997
6 N -0.330 5.330
7 C 0.377 3.623
8 O -0.452 6.452
9 C -0.475 4.475
10 S 0.594 5.406
11 C -0.335 4.335
12 C -0.218 4.218
13 C 0.097 3.903
14 F -0.111 7.111
15 C -0.021 4.021
16 C -0.183 4.183
17 C 0.075 3.925
18 H 0.075 0.925
19 N -0.389 5.389
20 C -0.347 4.347
21 H 0.084 0.916
22 C -0.250 4.250
23 N -0.634 5.634
24 Si 0.770 3.230
25 H -0.212 1.212
26 H -0.226 1.226
27 H -0.181 1.181
28 H 0.064 0.936
29 H 0.082 0.918
30 H 0.082 0.918
31 H 0.089 0.911
32 H 0.070 0.930
33 H 0.107 0.893
34 H 0.110 0.890
35 H 0.238 0.762
36 H 0.195 0.805
37 H 0.116 0.884
38 H 0.117 0.883
39 H 0.066 0.934
40 H 0.092 0.908
41 H 0.194 0.806
42 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges -6.928 16.932 15.048 23.688
hybrid contribution -1.642 0.539 -2.613 3.133
sum -8.571 17.471 12.435 23.094
Atomic orbital electron populations
1.21800 0.94887 1.02079 1.01786 1.21414 0.96081 0.94838 1.02521
1.21707 0.95667 0.96861 0.97608 0.92568 1.21749 0.99524 0.80992
0.97468 1.48073 1.09081 1.06319 1.69493 1.17099 0.85806 0.83215
0.76209 1.90804 1.14961 1.86101 1.53369 1.24590 1.08724 0.96882
1.17350 1.83132 1.13841 0.99180 1.44469 1.25762 1.02434 1.03176
1.02093 1.19971 0.96669 1.00239 1.04925 1.17437 0.85409 0.93346
0.94093 1.91491 1.49713 1.96798 1.73129 1.22227 0.78539 1.02657
0.98687 1.22445 1.01851 0.97420 0.96564 1.20399 0.92279 0.91131
0.88714 0.92454 1.42805 1.14995 1.66417 1.14719 1.19023 0.91190
1.25380 0.99103 0.91550 1.25300 0.97965 1.01182 1.00514 1.69848
1.21499 1.43743 1.28282 0.85619 0.80219 0.76680 0.80501 1.21155
1.22605 1.18096 0.93588 0.91829 0.91841 0.91065 0.93037 0.89337
0.88958 0.76198 0.80490 0.88390 0.88256 0.93374 0.90765 0.80616
0.93565
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.66 9.67 71.98 0.70 -2.96 16
2 C -0.11 -3.21 5.31 30.59 0.16 -3.05 16
3 C -0.10 -2.96 1.93 -10.72 -0.02 -2.98 16
4 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16
5 C 0.12 3.30 5.33 86.36 0.46 3.76 16
6 N -0.60 -15.92 2.97 -824.04 -2.45 -18.37 16
7 C 0.59 17.69 7.47 86.34 0.65 18.34 16
8 O -0.57 -21.43 16.34 -4.46 -0.07 -21.50 16
9 C -0.35 -8.49 5.39 24.06 0.13 -8.36 16
10 S 0.33 4.30 20.05 -56.49 -1.13 3.17 16
11 C -0.20 -1.87 10.91 66.80 0.73 -1.14 16
12 C -0.19 -2.77 10.15 21.13 0.21 -2.55 16
13 C 0.13 3.16 7.47 21.84 0.16 3.33 16
14 F -0.13 -3.95 17.09 44.97 0.77 -3.18 16
15 C 0.10 2.34 5.62 86.36 0.49 2.83 16
16 C -0.14 -4.34 5.66 30.67 0.17 -4.17 16
17 C 0.18 6.32 2.19 45.02 0.10 6.42 16
18 H 0.06 2.01 8.08 -2.39 -0.02 2.00 16
19 N -0.75 -32.89 4.14 -322.82 -1.34 -34.23 16
20 C -0.22 -11.59 10.41 84.03 0.87 -10.71 16
21 H 0.07 3.84 8.06 -2.91 -0.02 3.82 16
22 C -0.06 -3.33 5.50 84.86 0.47 -2.86 16
23 N -0.98 -61.46 13.97 21.65 0.30 -61.15 16
24 Si 0.94 45.25 27.74 68.60 1.90 47.15 16
25 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16
26 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16
27 H -0.26 -11.28 6.52 99.48 0.65 -10.63 16
28 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16
29 H 0.06 1.43 6.70 -2.39 -0.02 1.42 16
30 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16
31 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16
32 H 0.05 1.78 7.22 -2.39 -0.02 1.76 16
33 H 0.09 2.50 5.71 -2.39 -0.01 2.48 16
34 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16
35 H 0.22 0.27 8.06 -2.91 -0.02 0.24 16
36 H 0.18 1.77 8.06 -2.91 -0.02 1.75 16
37 H 0.10 1.91 4.53 -11.65 -0.05 1.86 16
38 H 0.10 1.86 8.14 -2.38 -0.02 1.84 16
39 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16
40 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16
41 H 0.36 15.96 5.37 -92.71 -0.50 15.46 16
42 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16
Total: -1.00 -73.85 351.28 3.71 -70.14
By element:
Atomic # 1 Polarization: 21.64 SS G_CDS: 0.45 Total: 22.09 kcal
Atomic # 6 Polarization: -9.40 SS G_CDS: 5.28 Total: -4.12 kcal
Atomic # 7 Polarization: -110.27 SS G_CDS: -3.48 Total: -113.75 kcal
Atomic # 8 Polarization: -21.43 SS G_CDS: -0.07 Total: -21.50 kcal
Atomic # 9 Polarization: -3.95 SS G_CDS: 0.77 Total: -3.18 kcal
Atomic # 14 Polarization: 45.25 SS G_CDS: 1.90 Total: 47.15 kcal
Atomic # 16 Polarization: 4.30 SS G_CDS: -1.13 Total: 3.17 kcal
Total: -73.85 3.71 -70.14 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001037838556.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 17.701 kcal
(2) G-P(sol) polarization free energy of solvation -73.853 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.152 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.711 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.142 kcal
(6) G-S(sol) free energy of system = (1) + (5) -52.441 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = -2.77 seconds