Wall clock time and date at job start Tue Mar 31 2020 14:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47071 * 2 1 4 4 N 1.46498 * 109.47006 * 119.99913 * 2 1 3 5 5 N 1.39927 * 125.74771 * 300.02188 * 4 2 1 6 6 C 1.30418 * 108.96145 * 180.02562 * 5 4 2 7 7 C 1.41343 * 108.04623 * 359.97438 * 6 5 4 8 8 C 1.47295 * 126.43780 * 179.97438 * 7 6 5 9 9 O 1.21618 * 120.00134 * 180.02562 * 8 7 6 10 10 N 1.34785 * 119.99889 * 0.03322 * 8 7 6 11 11 C 1.46497 * 120.00050 * 179.97438 * 10 8 7 12 12 C 1.52994 * 109.47129 * 179.97438 * 11 10 8 13 13 H 1.09006 * 112.74064 * 56.24319 * 12 11 10 14 14 C 1.53497 * 113.46847 * 187.05829 * 12 11 10 15 15 C 1.53491 * 83.34445 * 140.85203 * 14 12 11 16 16 N 1.47061 * 113.46929 * 285.49485 * 12 11 10 17 17 C 1.36936 * 136.05776 * 38.06794 * 16 12 11 18 18 H 1.08001 * 119.99880 * 353.55838 * 17 16 12 19 19 C 1.38816 * 120.00132 * 173.56613 * 17 16 12 20 20 N 1.31621 * 119.99939 * 5.05245 * 19 17 16 21 21 Si 1.86800 * 119.99766 * 185.05275 * 19 17 16 22 22 H 1.48500 * 109.47252 * 94.98538 * 21 19 17 23 23 H 1.48503 * 109.46921 * 214.98555 * 21 19 17 24 24 H 1.48495 * 109.47365 * 334.98615 * 21 19 17 25 25 C 1.34347 * 125.75388 * 120.34964 * 4 2 1 26 26 Cl 1.73601 * 126.31657 * 359.97438 * 25 4 2 27 27 H 1.08996 * 109.46740 * 60.00250 * 1 2 3 28 28 H 1.09001 * 109.46835 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46987 * 300.00418 * 1 2 3 30 30 H 1.09003 * 109.47495 * 239.99624 * 2 1 3 31 31 H 1.09004 * 109.47199 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47135 * 299.99508 * 3 2 1 33 33 H 1.09000 * 109.47556 * 59.99930 * 3 2 1 34 34 H 1.07996 * 125.97753 * 180.02562 * 6 5 4 35 35 H 0.97001 * 119.99868 * 359.97438 * 10 8 7 36 36 H 1.08998 * 109.47174 * 59.99548 * 11 10 8 37 37 H 1.09002 * 109.46726 * 300.00008 * 11 10 8 38 38 H 1.09001 * 114.20627 * 254.43836 * 14 12 11 39 39 H 1.08998 * 114.20879 * 27.26016 * 14 12 11 40 40 H 1.09003 * 113.46634 * 219.15726 * 15 14 12 41 41 H 1.08996 * 113.47326 * 88.70982 * 15 14 12 42 42 H 0.96998 * 119.99733 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 7 1.7551 -0.3191 2.5193 6 6 2.3494 -1.1584 3.3213 7 6 3.0262 -2.1149 2.5309 8 6 3.8286 -3.2474 3.0240 9 8 4.3635 -4.0029 2.2351 10 7 3.9698 -3.4467 4.3495 11 6 4.7674 -4.5733 4.8400 12 6 4.7668 -4.5709 6.3700 13 1 3.7616 -4.5969 6.7910 14 6 5.7149 -5.6106 6.9833 15 6 5.9988 -4.4920 7.9953 16 7 5.6195 -3.5249 6.9543 17 6 5.9261 -2.2234 6.6588 18 1 5.5665 -1.7786 5.7427 19 6 6.6991 -1.4759 7.5366 20 7 7.2203 -2.0449 8.6029 21 14 6.9996 0.3377 7.2045 22 1 6.0032 1.1490 7.9489 23 1 8.3681 0.7025 7.6509 24 1 6.8663 0.6032 5.7495 25 6 2.7994 -1.7836 1.2077 26 17 3.4076 -2.6274 -0.1822 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 3.1301 1.4425 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 2.3275 -1.1283 4.4007 35 1 3.5434 -2.8440 4.9787 36 1 5.7909 -4.4791 4.4773 37 1 4.3380 -5.5074 4.4776 38 1 5.2114 -6.4795 7.4072 39 1 6.5649 -5.8681 6.3515 40 1 7.0470 -4.4267 8.2873 41 1 5.3222 -4.4976 8.8498 42 1 7.7608 -1.5226 9.2160 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038557315.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:19 Heat of formation + Delta-G solvation = 68.946434 kcal Electronic energy + Delta-G solvation = -25512.000194 eV Core-core repulsion = 21748.901023 eV Total energy + Delta-G solvation = -3763.099171 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.125 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.61594 -40.50934 -39.50049 -38.05444 -36.74371 -35.39528 -34.20009 -31.85736 -31.40730 -29.89361 -28.88389 -28.28762 -25.34138 -24.67690 -24.04661 -23.00915 -21.58530 -21.14760 -20.70366 -19.12767 -18.42667 -17.52898 -17.09904 -16.95305 -16.77317 -15.99260 -15.89088 -15.64599 -15.51486 -15.22504 -14.78320 -14.55964 -14.41098 -14.05695 -13.55353 -13.39109 -13.31345 -13.27077 -13.06533 -13.04907 -12.91638 -12.65141 -12.53646 -12.43979 -12.28351 -12.13281 -11.91604 -11.80516 -11.59345 -11.15233 -10.80898 -10.74490 -10.58767 -10.08702 -9.70693 -8.82790 -7.84962 -5.14746 0.12106 0.17842 0.99308 1.38516 1.46188 1.46957 1.54761 2.29536 2.41649 2.51074 3.18106 3.37634 3.51747 3.70597 3.80746 3.81049 3.95035 3.98650 4.02529 4.20143 4.41569 4.43699 4.59400 4.62575 4.72105 4.72537 4.73583 4.77372 4.95321 5.04347 5.10875 5.16098 5.17678 5.25418 5.39561 5.50444 5.55588 5.64256 5.79635 6.00950 6.23274 6.66405 6.98488 7.32160 7.68806 8.69402 9.33665 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.013589 B = 0.003696 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.952256 B = 7573.006728 C = 8863.483723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.133 3.867 3 C -0.157 4.157 4 N -0.339 5.339 5 N -0.279 5.279 6 C 0.092 3.908 7 C -0.288 4.288 8 C 0.586 3.414 9 O -0.575 6.575 10 N -0.706 5.706 11 C 0.134 3.866 12 C 0.134 3.866 13 H 0.071 0.929 14 C -0.135 4.135 15 C 0.146 3.854 16 N -0.629 5.629 17 C -0.203 4.203 18 H 0.088 0.912 19 C -0.068 4.068 20 N -0.953 5.953 21 Si 0.962 3.038 22 H -0.286 1.286 23 H -0.301 1.301 24 H -0.273 1.273 25 C 0.175 3.825 26 Cl 0.030 6.970 27 H 0.109 0.891 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.118 0.882 31 H 0.051 0.949 32 H 0.110 0.890 33 H 0.063 0.937 34 H 0.217 0.783 35 H 0.407 0.593 36 H 0.042 0.958 37 H 0.081 0.919 38 H 0.099 0.901 39 H 0.079 0.921 40 H 0.030 0.970 41 H 0.023 0.977 42 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.280 1.511 -17.735 23.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.034 3.966 3 C -0.215 4.215 4 N -0.122 5.122 5 N -0.100 5.100 6 C -0.095 4.095 7 C -0.304 4.304 8 C 0.374 3.626 9 O -0.457 6.457 10 N -0.355 5.355 11 C 0.009 3.991 12 C 0.028 3.972 13 H 0.088 0.912 14 C -0.174 4.174 15 C 0.020 3.980 16 N -0.355 5.355 17 C -0.331 4.331 18 H 0.105 0.895 19 C -0.261 4.261 20 N -0.602 5.602 21 Si 0.792 3.208 22 H -0.213 1.213 23 H -0.229 1.229 24 H -0.198 1.198 25 C 0.015 3.985 26 Cl 0.058 6.942 27 H 0.128 0.872 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.136 0.864 31 H 0.070 0.930 32 H 0.129 0.871 33 H 0.082 0.918 34 H 0.234 0.766 35 H 0.242 0.758 36 H 0.061 0.939 37 H 0.099 0.901 38 H 0.118 0.882 39 H 0.098 0.902 40 H 0.049 0.951 41 H 0.041 0.959 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -15.504 2.347 -18.587 24.318 hybrid contribution 1.051 0.567 0.643 1.357 sum -14.452 2.914 -17.944 23.224 Atomic orbital electron populations 1.22115 0.90994 1.03220 1.04809 1.22026 0.97464 0.94829 0.82300 1.22139 1.01337 0.93168 1.04824 1.49286 1.36196 1.19361 1.07377 1.77236 1.24165 1.22787 0.85772 1.24391 0.93299 0.90398 1.01383 1.19945 1.14362 1.04777 0.91350 1.17302 0.79537 0.83310 0.82451 1.90746 1.50457 1.48331 1.56116 1.45652 1.52394 1.31398 1.06081 1.21590 0.94420 0.88770 0.94274 1.22561 0.95397 0.88177 0.91089 0.91193 1.23498 0.99216 0.96303 0.98375 1.21986 0.98064 0.86329 0.91621 1.45969 1.50280 1.09298 1.29908 1.19205 1.25705 0.85803 1.02406 0.89456 1.25495 1.01772 1.01421 0.97420 1.70020 1.38947 1.35634 1.15633 0.85282 0.76470 0.81450 0.77567 1.21268 1.22863 1.19801 1.22151 0.95309 0.90162 0.90875 1.98436 1.84644 1.73881 1.37196 0.87245 0.92424 0.91739 0.86377 0.92980 0.87130 0.91802 0.76633 0.75768 0.93946 0.90132 0.88247 0.90234 0.95100 0.95915 0.94657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.44 71.98 0.68 -1.10 16 2 C 0.13 2.00 3.66 44.99 0.16 2.17 16 3 C -0.16 -2.06 9.45 71.98 0.68 -1.38 16 4 N -0.34 -7.83 3.25 -315.64 -1.03 -8.85 16 5 N -0.28 -7.12 12.33 -56.26 -0.69 -7.81 16 6 C 0.09 2.39 11.50 85.67 0.99 3.38 16 7 C -0.29 -8.66 6.13 -20.12 -0.12 -8.78 16 8 C 0.59 20.35 7.81 86.62 0.68 21.03 16 9 O -0.58 -22.95 15.64 -4.09 -0.06 -23.01 16 10 N -0.71 -23.35 5.32 -466.50 -2.48 -25.83 16 11 C 0.13 4.62 5.52 86.38 0.48 5.10 16 12 C 0.13 4.80 4.10 41.79 0.17 4.97 16 13 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 14 C -0.14 -4.56 8.03 30.93 0.25 -4.32 16 15 C 0.15 6.59 7.31 83.17 0.61 7.20 16 16 N -0.63 -29.92 3.65 -713.96 -2.60 -32.52 16 17 C -0.20 -10.73 10.54 84.03 0.89 -9.84 16 18 H 0.09 4.41 7.61 -2.91 -0.02 4.39 16 19 C -0.07 -3.83 5.50 84.86 0.47 -3.36 16 20 N -0.95 -57.16 11.62 21.65 0.25 -56.91 16 21 Si 0.96 45.73 29.56 68.60 2.03 47.76 16 22 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 23 H -0.30 -14.69 7.11 99.48 0.71 -13.99 16 24 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 25 C 0.18 4.75 7.53 84.32 0.63 5.38 16 26 Cl 0.03 0.75 27.00 -2.72 -0.07 0.68 16 27 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.12 1.45 7.23 -2.39 -0.02 1.44 16 31 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.22 4.55 7.50 -2.91 -0.02 4.53 16 35 H 0.41 12.50 7.43 -92.71 -0.69 11.81 16 36 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 38 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 39 H 0.08 2.71 8.12 -2.39 -0.02 2.69 16 40 H 0.03 1.60 7.31 -2.39 -0.02 1.59 16 41 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.24 14.42 8.31 -92.71 -0.77 13.65 16 Total: -1.00 -71.73 369.29 2.24 -69.49 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: 0.35 Total: 16.56 kcal Atomic # 6 Polarization: 13.90 SS G_CDS: 6.56 Total: 20.45 kcal Atomic # 7 Polarization: -125.38 SS G_CDS: -6.56 Total: -131.94 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.06 Total: -23.01 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Atomic # 17 Polarization: 0.75 SS G_CDS: -0.07 Total: 0.68 kcal Total: -71.73 2.24 -69.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038557315.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.436 kcal (2) G-P(sol) polarization free energy of solvation -71.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds