Wall clock time and date at job start Tue Mar 31 2020 17:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47161 * 2 1 4 4 N 1.28442 * 125.18735 * 94.76379 * 3 2 1 5 5 C 1.30831 * 110.98253 * 179.97438 * 4 3 2 6 6 C 1.39810 * 107.87476 * 359.97438 * 5 4 3 7 7 Cl 1.73609 * 127.33633 * 179.97438 * 6 5 4 8 8 C 1.36744 * 125.18948 * 274.45583 * 3 2 1 9 9 C 1.47041 * 126.90138 * 0.02562 * 8 3 2 10 10 O 1.21643 * 119.99421 * 99.31046 * 9 8 3 11 11 N 1.34773 * 120.00099 * 279.30833 * 9 8 3 12 12 C 1.47426 * 125.64732 * 354.45007 * 11 9 8 13 13 C 1.55136 * 104.71995 * 155.82034 * 12 11 9 14 14 H 1.08994 * 111.19183 * 279.19182 * 13 12 11 15 15 N 1.46498 * 110.90565 * 155.27305 * 13 12 11 16 16 C 1.36936 * 119.99880 * 92.97788 * 15 13 12 17 17 H 1.08003 * 120.00237 * 359.97438 * 16 15 13 18 18 C 1.38811 * 120.00403 * 179.97438 * 16 15 13 19 19 N 1.31623 * 119.99423 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00442 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46803 * 90.00106 * 20 18 16 22 22 H 1.48502 * 109.47515 * 209.99969 * 20 18 16 23 23 H 1.48501 * 109.47308 * 330.00420 * 20 18 16 24 24 C 1.55161 * 101.48668 * 37.29441 * 13 12 11 25 25 H 1.09001 * 110.72016 * 82.69264 * 24 13 12 26 26 C 1.52992 * 110.72044 * 205.97104 * 24 13 12 27 27 C 1.47016 * 125.64822 * 174.76336 * 11 9 8 28 28 H 1.08998 * 109.47053 * 295.03260 * 1 2 3 29 29 H 1.09001 * 109.47153 * 55.02785 * 1 2 3 30 30 H 1.08995 * 109.46963 * 175.03145 * 1 2 3 31 31 H 1.09004 * 109.47501 * 119.99788 * 2 1 3 32 32 H 1.09001 * 109.47247 * 240.00165 * 2 1 3 33 33 H 1.07994 * 126.06442 * 180.02562 * 5 4 3 34 34 H 1.09003 * 110.36755 * 274.74604 * 12 11 9 35 35 H 1.08995 * 110.36901 * 37.07435 * 12 11 9 36 36 H 0.96997 * 120.00483 * 272.97698 * 15 13 12 37 37 H 0.97002 * 119.99767 * 179.97438 * 19 18 16 38 38 H 1.09002 * 109.47097 * 174.97418 * 26 24 13 39 39 H 1.08999 * 109.47049 * 294.97418 * 26 24 13 40 40 H 1.09005 * 109.47385 * 54.97528 * 26 24 13 41 41 H 1.09005 * 109.88457 * 300.43685 * 27 11 9 42 42 H 1.09001 * 109.88512 * 61.44746 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.3472 2.0500 1.0461 5 6 2.7454 3.2544 0.7261 6 6 2.6669 3.3771 -0.6644 7 17 3.0736 4.7659 -1.6235 8 6 2.1992 2.1531 -1.1142 9 6 1.9455 1.7632 -2.5091 10 8 0.9137 2.1021 -3.0572 11 7 2.8560 1.0305 -3.1802 12 6 4.1905 0.6515 -2.6813 13 6 4.5607 -0.6271 -3.4782 14 1 4.0867 -1.5098 -3.0491 15 7 6.0141 -0.7962 -3.5492 16 6 6.6613 -1.5583 -2.6135 17 1 6.1003 -2.0343 -1.8229 18 6 8.0384 -1.7191 -2.6810 19 7 8.7221 -1.1393 -3.6449 20 14 8.9213 -2.7580 -1.4042 21 1 8.9835 -4.1669 -1.8695 22 1 10.2993 -2.2394 -1.2106 23 1 8.1830 -2.6940 -0.1173 24 6 3.9696 -0.3022 -4.8755 25 1 4.6580 0.3168 -5.4510 26 6 3.6329 -1.5881 -5.6331 27 6 2.6854 0.4824 -4.5337 28 1 -0.3633 0.4348 0.9311 29 1 -0.3633 0.5890 -0.8421 30 1 -0.3633 -1.0238 -0.0890 31 1 1.8934 -0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.0768 4.0182 1.4140 34 1 4.9095 1.4463 -2.8796 35 1 4.1488 0.4340 -1.6141 36 1 6.5181 -0.3684 -4.2590 37 1 9.6845 -1.2514 -3.6919 38 1 3.1384 -1.3379 -6.5717 39 1 4.5507 -2.1380 -5.8412 40 1 2.9697 -2.2044 -5.0261 41 1 1.8251 -0.1866 -4.5571 42 1 2.5432 1.2940 -5.2472 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054715035.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:40 Heat of formation + Delta-G solvation = 52.439357 kcal Electronic energy + Delta-G solvation = -26345.197060 eV Core-core repulsion = 22581.382089 eV Total energy + Delta-G solvation = -3763.814972 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.125 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.71377 -39.79975 -37.65879 -36.62254 -34.73768 -34.20786 -32.71837 -30.96640 -30.65802 -29.95178 -27.68272 -26.55916 -24.43054 -24.06661 -22.84844 -21.81261 -21.20914 -20.03179 -19.29009 -17.82967 -17.32967 -16.52222 -16.27151 -15.81486 -15.57253 -15.04929 -14.48604 -14.41028 -14.11784 -13.85518 -13.69662 -13.24235 -13.09172 -13.07214 -12.88288 -12.66164 -12.41088 -12.06371 -11.90309 -11.77885 -11.73070 -11.58243 -11.19937 -11.11463 -10.83606 -10.72629 -10.57083 -10.34785 -10.21127 -10.07118 -9.83248 -9.37518 -9.11179 -8.81622 -8.57140 -7.18358 -5.93104 -3.24561 1.39417 1.70346 2.27028 2.39981 2.70321 3.05182 3.33879 3.39723 3.41377 4.23478 4.30730 4.47382 4.62351 4.77872 4.85726 4.91520 5.00278 5.07476 5.12934 5.26624 5.31642 5.43200 5.48216 5.52241 5.62904 5.72149 5.78117 5.79635 5.90732 6.06174 6.07732 6.12963 6.21718 6.32989 6.35934 6.50010 6.52252 6.72848 7.46302 7.54524 7.81140 7.98984 8.23826 9.36197 9.88251 10.23152 11.28542 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.011017 B = 0.004268 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.013856 B = 6559.069236 C = 7080.357555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.113 3.887 3 N -0.261 5.261 4 N -0.270 5.270 5 C 0.023 3.977 6 C -0.116 4.116 7 Cl -0.022 7.022 8 C 0.003 3.997 9 C 0.602 3.398 10 O -0.526 6.526 11 N -0.599 5.599 12 C 0.070 3.930 13 C 0.180 3.820 14 H 0.069 0.931 15 N -0.707 5.707 16 C -0.252 4.252 17 H 0.071 0.929 18 C -0.005 4.005 19 N -0.927 5.927 20 Si 0.907 3.093 21 H -0.288 1.288 22 H -0.290 1.290 23 H -0.281 1.281 24 C -0.115 4.115 25 H 0.087 0.913 26 C -0.133 4.133 27 C 0.117 3.883 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.112 0.888 32 H 0.101 0.899 33 H 0.194 0.806 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.388 0.612 37 H 0.258 0.742 38 H 0.050 0.950 39 H 0.068 0.932 40 H 0.052 0.948 41 H 0.069 0.931 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.559 4.229 3.807 15.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.006 4.006 3 N -0.050 5.050 4 N -0.101 5.101 5 C -0.155 4.155 6 C -0.154 4.154 7 Cl 0.006 6.994 8 C -0.127 4.127 9 C 0.386 3.614 10 O -0.401 6.401 11 N -0.332 5.332 12 C -0.055 4.055 13 C 0.067 3.933 14 H 0.087 0.913 15 N -0.346 5.346 16 C -0.383 4.383 17 H 0.089 0.911 18 C -0.202 4.202 19 N -0.574 5.574 20 Si 0.738 3.262 21 H -0.215 1.215 22 H -0.216 1.216 23 H -0.207 1.207 24 C -0.135 4.135 25 H 0.105 0.895 26 C -0.191 4.191 27 C -0.006 4.006 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.103 0.897 31 H 0.130 0.870 32 H 0.119 0.881 33 H 0.211 0.789 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.223 0.777 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.087 0.913 40 H 0.071 0.929 41 H 0.088 0.912 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.254 3.551 4.505 16.297 hybrid contribution 1.072 0.451 -0.155 1.173 sum -14.182 4.002 4.351 15.365 Atomic orbital electron populations 1.22198 0.93044 1.03882 1.03787 1.22147 0.96242 0.76194 1.06028 1.45704 1.45331 1.12229 1.01687 1.73221 1.17261 1.06043 1.13531 1.23474 1.04528 0.94840 0.92669 1.21197 1.11344 0.90176 0.92659 1.98349 1.92232 1.38144 1.70637 1.21118 1.09076 0.92718 0.89787 1.16476 0.83090 0.78378 0.83454 1.90834 1.26557 1.53966 1.68767 1.48472 1.16833 1.50424 1.17452 1.23711 0.81336 1.00787 0.99694 1.21387 0.87028 0.93465 0.91433 0.91303 1.42286 0.99757 1.59115 1.33477 1.19198 0.90133 1.23383 1.05560 0.91080 1.24759 0.96424 1.00481 0.98498 1.69656 1.07017 1.47297 1.33385 0.86207 0.79233 0.79917 0.80887 1.21521 1.21618 1.20670 1.22552 0.95390 0.97043 0.98519 0.89510 1.21648 1.02091 0.96269 0.99048 1.22081 0.98653 0.97283 0.82546 0.91283 0.91278 0.89683 0.87006 0.88091 0.78898 0.90682 0.91730 0.77738 0.93229 0.93105 0.91256 0.92876 0.91237 0.91393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.55 10.24 37.16 0.38 -1.17 16 2 C 0.11 1.20 6.80 -4.04 -0.03 1.17 16 3 N -0.26 -3.57 3.35 -57.11 -0.19 -3.77 16 4 N -0.27 -3.77 11.89 30.61 0.36 -3.41 16 5 C 0.02 0.30 12.04 -17.39 -0.21 0.09 16 6 C -0.12 -1.71 6.89 -38.88 -0.27 -1.98 16 7 Cl -0.02 -0.31 29.24 -51.86 -1.52 -1.83 16 8 C 0.00 0.05 5.57 -82.00 -0.46 -0.40 16 9 C 0.60 9.79 7.11 -12.69 -0.09 9.70 16 10 O -0.53 -9.73 17.44 5.24 0.09 -9.63 16 11 N -0.60 -9.19 3.32 -171.79 -0.57 -9.76 16 12 C 0.07 1.18 6.43 -2.41 -0.02 1.16 16 13 C 0.18 3.13 3.18 -65.66 -0.21 2.92 16 14 H 0.07 1.20 7.99 -51.93 -0.41 0.78 16 15 N -0.71 -15.85 5.24 -51.23 -0.27 -16.11 16 16 C -0.25 -6.39 9.96 -15.06 -0.15 -6.54 16 17 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 18 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 19 N -0.93 -26.33 13.06 55.49 0.72 -25.61 16 20 Si 0.91 21.20 29.55 -169.99 -5.02 16.17 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 C -0.12 -1.67 3.19 -88.79 -0.28 -1.95 16 25 H 0.09 1.32 8.00 -51.93 -0.42 0.90 16 26 C -0.13 -1.72 9.13 37.15 0.34 -1.38 16 27 C 0.12 1.61 6.47 -3.07 -0.02 1.59 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.10 1.06 7.91 -51.93 -0.41 0.65 16 33 H 0.19 1.86 8.06 -52.49 -0.42 1.44 16 34 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.06 1.11 7.60 -51.93 -0.39 0.71 16 36 H 0.39 9.36 7.76 -40.82 -0.32 9.05 16 37 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 38 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.05 0.64 8.13 -51.93 -0.42 0.22 16 41 H 0.07 0.88 7.82 -51.93 -0.41 0.48 16 42 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 371.47 15.07 5.60 5.60 Total: -1.00 -30.30 371.47 -8.03 -38.33 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -6.13 Total: 7.01 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -1.10 Total: 3.00 kcal Atomic # 7 Polarization: -58.71 SS G_CDS: 0.06 Total: -58.66 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.09 Total: -9.63 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -1.52 Total: -1.83 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.30 -8.03 -38.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054715035.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.774 kcal (2) G-P(sol) polarization free energy of solvation -30.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds