Wall clock time and date at job start Tue Mar 31 2020 17:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47161 * 2 1 4 4 N 1.28442 * 125.18735 * 94.76379 * 3 2 1 5 5 C 1.30831 * 110.98253 * 179.97438 * 4 3 2 6 6 C 1.39810 * 107.87476 * 359.97438 * 5 4 3 7 7 Cl 1.73609 * 127.33633 * 179.97438 * 6 5 4 8 8 C 1.36744 * 125.18948 * 274.45583 * 3 2 1 9 9 C 1.47041 * 126.90138 * 0.02562 * 8 3 2 10 10 O 1.21643 * 119.99421 * 99.31046 * 9 8 3 11 11 N 1.34773 * 120.00099 * 279.30833 * 9 8 3 12 12 C 1.47426 * 125.64732 * 354.45007 * 11 9 8 13 13 C 1.55136 * 104.71995 * 155.82034 * 12 11 9 14 14 H 1.08994 * 111.19183 * 279.19182 * 13 12 11 15 15 N 1.46498 * 110.90565 * 155.27305 * 13 12 11 16 16 C 1.36936 * 119.99880 * 92.97788 * 15 13 12 17 17 H 1.08003 * 120.00237 * 359.97438 * 16 15 13 18 18 C 1.38811 * 120.00403 * 179.97438 * 16 15 13 19 19 N 1.31623 * 119.99423 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00442 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46803 * 90.00106 * 20 18 16 22 22 H 1.48502 * 109.47515 * 209.99969 * 20 18 16 23 23 H 1.48501 * 109.47308 * 330.00420 * 20 18 16 24 24 C 1.55161 * 101.48668 * 37.29441 * 13 12 11 25 25 H 1.09001 * 110.72016 * 82.69264 * 24 13 12 26 26 C 1.52992 * 110.72044 * 205.97104 * 24 13 12 27 27 C 1.47016 * 125.64822 * 174.76336 * 11 9 8 28 28 H 1.08998 * 109.47053 * 295.03260 * 1 2 3 29 29 H 1.09001 * 109.47153 * 55.02785 * 1 2 3 30 30 H 1.08995 * 109.46963 * 175.03145 * 1 2 3 31 31 H 1.09004 * 109.47501 * 119.99788 * 2 1 3 32 32 H 1.09001 * 109.47247 * 240.00165 * 2 1 3 33 33 H 1.07994 * 126.06442 * 180.02562 * 5 4 3 34 34 H 1.09003 * 110.36755 * 274.74604 * 12 11 9 35 35 H 1.08995 * 110.36901 * 37.07435 * 12 11 9 36 36 H 0.96997 * 120.00483 * 272.97698 * 15 13 12 37 37 H 0.97002 * 119.99767 * 179.97438 * 19 18 16 38 38 H 1.09002 * 109.47097 * 174.97418 * 26 24 13 39 39 H 1.08999 * 109.47049 * 294.97418 * 26 24 13 40 40 H 1.09005 * 109.47385 * 54.97528 * 26 24 13 41 41 H 1.09005 * 109.88457 * 300.43685 * 27 11 9 42 42 H 1.09001 * 109.88512 * 61.44746 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.3472 2.0500 1.0461 5 6 2.7454 3.2544 0.7261 6 6 2.6669 3.3771 -0.6644 7 17 3.0736 4.7659 -1.6235 8 6 2.1992 2.1531 -1.1142 9 6 1.9455 1.7632 -2.5091 10 8 0.9137 2.1021 -3.0572 11 7 2.8560 1.0305 -3.1802 12 6 4.1905 0.6515 -2.6813 13 6 4.5607 -0.6271 -3.4782 14 1 4.0867 -1.5098 -3.0491 15 7 6.0141 -0.7962 -3.5492 16 6 6.6613 -1.5583 -2.6135 17 1 6.1003 -2.0343 -1.8229 18 6 8.0384 -1.7191 -2.6810 19 7 8.7221 -1.1393 -3.6449 20 14 8.9213 -2.7580 -1.4042 21 1 8.9835 -4.1669 -1.8695 22 1 10.2993 -2.2394 -1.2106 23 1 8.1830 -2.6940 -0.1173 24 6 3.9696 -0.3022 -4.8755 25 1 4.6580 0.3168 -5.4510 26 6 3.6329 -1.5881 -5.6331 27 6 2.6854 0.4824 -4.5337 28 1 -0.3633 0.4348 0.9311 29 1 -0.3633 0.5890 -0.8421 30 1 -0.3633 -1.0238 -0.0890 31 1 1.8934 -0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.0768 4.0182 1.4140 34 1 4.9095 1.4463 -2.8796 35 1 4.1488 0.4340 -1.6141 36 1 6.5181 -0.3684 -4.2590 37 1 9.6845 -1.2514 -3.6919 38 1 3.1384 -1.3379 -6.5717 39 1 4.5507 -2.1380 -5.8412 40 1 2.9697 -2.2044 -5.0261 41 1 1.8251 -0.1866 -4.5571 42 1 2.5432 1.2940 -5.2472 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054715035.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:39 Heat of formation + Delta-G solvation = 34.054794 kcal Electronic energy + Delta-G solvation = -26345.994275 eV Core-core repulsion = 22581.382089 eV Total energy + Delta-G solvation = -3764.612186 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.77310 -41.10109 -39.02491 -37.72532 -35.93220 -35.62841 -34.09816 -32.60367 -31.86329 -30.86700 -29.24655 -27.69869 -25.95376 -25.23035 -24.08255 -22.95022 -22.48881 -21.35015 -20.41139 -19.16688 -19.01137 -17.76941 -17.55001 -16.94356 -16.71858 -16.47711 -15.87680 -15.56500 -15.36169 -15.24257 -14.82794 -14.62487 -14.51740 -14.36748 -13.95240 -13.90652 -13.36537 -13.16694 -13.08550 -12.92301 -12.90755 -12.86635 -12.81451 -12.39969 -12.27153 -12.17155 -12.01784 -11.73924 -11.66419 -11.54001 -11.39333 -10.96450 -10.42709 -9.92246 -9.88370 -9.06434 -7.95108 -5.24840 0.26701 0.63531 1.06517 1.35485 1.49402 1.50427 1.54634 1.58072 1.90709 2.55595 3.02752 3.35755 3.38677 3.61387 3.74749 3.83165 3.85084 3.89763 4.08076 4.15483 4.16155 4.23909 4.27974 4.40568 4.52902 4.61483 4.65963 4.69651 4.81753 4.85125 4.99000 5.05804 5.08428 5.09203 5.14500 5.33468 5.46534 5.50631 5.54002 6.15709 6.25569 6.70593 6.76628 7.33807 8.04221 8.27991 9.27576 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.011017 B = 0.004268 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.013856 B = 6559.069236 C = 7080.357555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.103 3.897 3 N -0.258 5.258 4 N -0.278 5.278 5 C 0.025 3.975 6 C -0.130 4.130 7 Cl -0.022 7.022 8 C -0.018 4.018 9 C 0.608 3.392 10 O -0.549 6.549 11 N -0.595 5.595 12 C 0.088 3.912 13 C 0.176 3.824 14 H 0.075 0.925 15 N -0.718 5.718 16 C -0.242 4.242 17 H 0.079 0.921 18 C -0.066 4.066 19 N -0.965 5.965 20 Si 0.965 3.035 21 H -0.287 1.287 22 H -0.300 1.300 23 H -0.270 1.270 24 C -0.104 4.104 25 H 0.078 0.922 26 C -0.127 4.127 27 C 0.118 3.882 28 H 0.070 0.930 29 H 0.046 0.954 30 H 0.112 0.888 31 H 0.130 0.870 32 H 0.100 0.900 33 H 0.224 0.776 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.377 0.623 37 H 0.251 0.749 38 H 0.074 0.926 39 H 0.048 0.952 40 H 0.065 0.935 41 H 0.088 0.912 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.005 3.500 4.707 17.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.016 4.016 3 N -0.047 5.047 4 N -0.108 5.108 5 C -0.152 4.152 6 C -0.168 4.168 7 Cl 0.006 6.994 8 C -0.149 4.149 9 C 0.393 3.607 10 O -0.427 6.427 11 N -0.327 5.327 12 C -0.038 4.038 13 C 0.065 3.935 14 H 0.093 0.907 15 N -0.356 5.356 16 C -0.373 4.373 17 H 0.097 0.903 18 C -0.258 4.258 19 N -0.614 5.614 20 Si 0.794 3.206 21 H -0.214 1.214 22 H -0.227 1.227 23 H -0.195 1.195 24 C -0.124 4.124 25 H 0.097 0.903 26 C -0.185 4.185 27 C -0.004 4.004 28 H 0.089 0.911 29 H 0.065 0.935 30 H 0.130 0.870 31 H 0.148 0.852 32 H 0.118 0.882 33 H 0.240 0.760 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.210 0.790 37 H 0.060 0.940 38 H 0.093 0.907 39 H 0.067 0.933 40 H 0.084 0.916 41 H 0.107 0.893 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.758 2.807 5.422 17.835 hybrid contribution 1.423 0.705 -0.433 1.646 sum -15.335 3.513 4.989 16.504 Atomic orbital electron populations 1.22146 0.91820 1.05163 1.02811 1.22478 0.97247 0.74955 1.06878 1.46031 1.44723 1.12919 1.01041 1.73223 1.17500 1.06467 1.13611 1.23984 1.03635 0.95165 0.92455 1.21461 1.11714 0.90148 0.93506 1.98344 1.92230 1.38062 1.70744 1.21115 1.10391 0.93564 0.89851 1.16531 0.82600 0.77805 0.83769 1.90817 1.27459 1.54927 1.69473 1.48425 1.16058 1.50244 1.17943 1.23299 0.81639 0.99598 0.99283 1.21552 0.84534 0.93803 0.93592 0.90668 1.42391 1.01709 1.58802 1.32681 1.19573 0.90313 1.22024 1.05400 0.90264 1.25457 0.97450 1.02445 1.00496 1.69797 1.06656 1.49564 1.35431 0.85280 0.77625 0.78362 0.79315 1.21367 1.22715 1.19472 1.22448 0.95295 0.97913 0.96732 0.90348 1.21608 1.01544 0.95119 1.00223 1.22180 0.98721 0.97668 0.81801 0.91130 0.93511 0.86984 0.85207 0.88164 0.75968 0.92566 0.92037 0.79041 0.94019 0.90673 0.93322 0.91645 0.89348 0.90794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.63 10.24 71.98 0.74 -1.89 16 2 C 0.10 1.98 6.80 86.38 0.59 2.57 16 3 N -0.26 -6.73 3.35 -334.58 -1.12 -7.85 16 4 N -0.28 -7.29 11.89 -57.07 -0.68 -7.97 16 5 C 0.02 0.61 12.04 85.22 1.03 1.64 16 6 C -0.13 -3.72 6.89 22.72 0.16 -3.56 16 7 Cl -0.02 -0.61 29.24 -2.72 -0.08 -0.69 16 8 C -0.02 -0.55 5.57 40.76 0.23 -0.32 16 9 C 0.61 19.22 7.11 86.55 0.62 19.84 16 10 O -0.55 -19.86 17.44 -4.17 -0.07 -19.93 16 11 N -0.59 -17.55 3.32 -815.65 -2.71 -20.26 16 12 C 0.09 2.87 6.43 86.93 0.56 3.43 16 13 C 0.18 5.96 3.18 46.46 0.15 6.11 16 14 H 0.08 2.48 7.99 -2.39 -0.02 2.46 16 15 N -0.72 -32.08 5.24 -316.00 -1.66 -33.74 16 16 C -0.24 -12.13 9.96 84.03 0.84 -11.29 16 17 H 0.08 3.78 7.83 -2.91 -0.02 3.76 16 18 C -0.07 -3.51 5.50 84.86 0.47 -3.04 16 19 N -0.96 -55.75 13.06 21.65 0.28 -55.47 16 20 Si 0.96 43.53 29.55 68.60 2.03 45.56 16 21 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 22 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 23 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 24 C -0.10 -2.87 3.19 -9.61 -0.03 -2.90 16 25 H 0.08 2.32 8.00 -2.39 -0.02 2.31 16 26 C -0.13 -3.03 9.13 71.98 0.66 -2.37 16 27 C 0.12 3.03 6.47 86.73 0.56 3.59 16 28 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.13 2.02 8.14 -2.38 -0.02 2.00 16 32 H 0.10 1.94 7.91 -2.39 -0.02 1.92 16 33 H 0.22 3.80 8.06 -2.91 -0.02 3.78 16 34 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.06 2.05 7.60 -2.39 -0.02 2.03 16 36 H 0.38 18.47 7.76 -92.71 -0.72 17.75 16 37 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 38 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.06 1.40 8.13 -2.38 -0.02 1.38 16 41 H 0.09 1.99 7.82 -2.38 -0.02 1.97 16 42 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -64.73 371.47 2.85 -61.87 By element: Atomic # 1 Polarization: 26.36 SS G_CDS: 0.32 Total: 26.67 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: 6.55 Total: 11.80 kcal Atomic # 7 Polarization: -119.40 SS G_CDS: -5.89 Total: -125.28 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.07 Total: -19.93 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -0.08 Total: -0.69 kcal Total: -64.73 2.85 -61.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054715035.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.929 kcal (2) G-P(sol) polarization free energy of solvation -64.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds