Wall clock time and date at job start Tue Mar 31 2020 15:28:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.08992 * 109.70143 * 2 1
4 4 C 1.53191 * 109.58506 * 239.63928 * 2 1 3
5 5 C 1.53043 * 109.31173 * 185.57974 * 4 2 1
6 6 C 1.53042 * 109.52686 * 61.37091 * 5 4 2
7 7 H 1.08998 * 109.49751 * 178.67494 * 6 5 4
8 8 N 1.46502 * 109.49554 * 58.58456 * 6 5 4
9 9 C 1.34771 * 120.00067 * 154.99897 * 8 6 5
10 10 O 1.21638 * 119.99984 * 5.10688 * 9 8 6
11 11 C 1.47031 * 119.99931 * 185.10590 * 9 8 6
12 12 C 1.38546 * 126.90597 * 265.24935 * 11 9 8
13 13 Cl 1.73600 * 127.33460 * 0.02562 * 12 11 9
14 14 C 1.39803 * 105.32740 * 179.86196 * 12 11 9
15 15 N 1.30832 * 107.87459 * 0.40927 * 14 12 11
16 16 N 1.28432 * 110.98482 * 359.74194 * 15 14 12
17 17 C 1.46500 * 125.18944 * 180.02562 * 16 15 14
18 18 C 1.53185 * 109.31265 * 298.61462 * 6 5 4
19 19 N 1.46927 * 109.58231 * 120.35476 * 2 1 3
20 20 C 1.36932 * 120.63419 * 353.36842 * 19 2 1
21 21 H 1.08000 * 119.99863 * 41.22054 * 20 19 2
22 22 C 1.38818 * 120.00255 * 221.21398 * 20 19 2
23 23 N 1.31618 * 119.99844 * 214.99975 * 22 20 19
24 24 Si 1.86798 * 119.99820 * 35.00062 * 22 20 19
25 25 H 1.48494 * 109.47079 * 84.91554 * 24 22 20
26 26 H 1.48501 * 109.47158 * 204.91530 * 24 22 20
27 27 H 1.48503 * 109.47083 * 324.91236 * 24 22 20
28 28 H 1.08998 * 109.47194 * 180.35934 * 1 2 3
29 29 H 1.08998 * 109.47328 * 300.35989 * 1 2 3
30 30 H 1.08998 * 109.47105 * 60.35742 * 1 2 3
31 31 H 1.08999 * 109.49872 * 65.62795 * 4 2 1
32 32 H 1.09000 * 109.52897 * 305.54617 * 4 2 1
33 33 H 1.08996 * 109.45963 * 181.39077 * 5 4 2
34 34 H 1.09004 * 109.45875 * 301.35800 * 5 4 2
35 35 H 0.97006 * 119.99626 * 334.99567 * 8 6 5
36 36 H 1.08005 * 126.06547 * 180.18341 * 14 12 11
37 37 H 1.09001 * 109.46748 * 264.63534 * 17 16 15
38 38 H 1.08998 * 109.47386 * 24.63948 * 17 16 15
39 39 H 1.08999 * 109.47205 * 144.64127 * 17 16 15
40 40 H 1.08999 * 109.60383 * 294.86581 * 18 6 5
41 41 H 1.09005 * 109.70252 * 174.50316 * 18 6 5
42 42 H 0.97005 * 119.99713 * 179.97438 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8975 1.0261 0.0000
4 6 2.0435 -0.7295 -1.2453
5 6 3.5675 -0.8481 -1.1700
6 6 3.9566 -1.6659 0.0636
7 1 5.0408 -1.7701 0.1040
8 7 3.3400 -2.9926 -0.0148
9 6 3.8962 -4.0337 0.6356
10 8 4.8554 -3.8548 1.3619
11 6 3.3436 -5.3858 0.4671
12 6 2.4160 -6.0130 1.2830
13 17 1.6654 -5.3714 2.7108
14 6 2.2103 -7.2713 0.7093
15 7 2.9721 -7.3586 -0.3508
16 7 3.6464 -6.2792 -0.5229
17 6 4.5947 -6.0410 -1.6138
18 6 3.4651 -0.9469 1.3238
19 7 2.0225 -0.6996 1.1945
20 6 1.1537 -1.1126 2.1690
21 1 0.2056 -1.5522 1.8963
22 6 1.4915 -0.9664 3.5075
23 7 1.1125 -1.8717 4.3845
24 14 2.4839 0.5151 4.0639
25 1 1.5692 1.6576 4.3152
26 1 3.2137 0.1812 5.3133
27 1 3.4579 0.8843 3.0054
28 1 -0.3633 -1.0276 0.0064
29 1 -0.3634 0.5194 0.8867
30 1 -0.3633 0.5083 -0.8932
31 1 1.7660 -0.1670 -2.1368
32 1 1.6030 -1.7254 -1.2918
33 1 3.9378 -1.3450 -2.0668
34 1 4.0061 0.1472 -1.0991
35 1 2.5313 -3.1215 -0.5348
36 1 1.5438 -8.0369 1.0781
37 1 5.6041 -6.2751 -1.2753
38 1 4.3396 -6.6760 -2.4622
39 1 4.5462 -4.9947 -1.9155
40 1 3.9903 0.0020 1.4317
41 1 3.6520 -1.5696 2.1987
42 1 1.3489 -1.7697 5.3198
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001071514010.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 15:28:29
Heat of formation + Delta-G solvation = 67.713080 kcal
Electronic energy + Delta-G solvation = -27233.347274 eV
Core-core repulsion = 23470.194620 eV
Total energy + Delta-G solvation = -3763.152653 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 326.125 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-42.45577 -39.54221 -37.67249 -36.00731 -34.27202 -33.34932 -32.68159 -31.37889
-30.68008 -29.98736 -27.18341 -26.41465 -24.88952 -23.30244 -22.41779 -21.61621
-20.57311 -20.09505 -18.96207 -18.14109 -16.62962 -16.18706 -15.99212 -15.36399
-15.27448 -14.77607 -14.50933 -14.04527 -13.95798 -13.62023 -13.38020 -13.34419
-13.18029 -12.97469 -12.82321 -12.44899 -12.18258 -11.74802 -11.43506 -11.40029
-11.34287 -11.22388 -10.96704 -10.60357 -10.46869 -10.26566 -10.07387 -9.99478
-9.89326 -9.71353 -9.45047 -9.18906 -8.69015 -8.46399 -8.22949 -6.64122
-5.99582 -3.29490 1.62726 2.02487 2.59276 2.73508 3.04438 3.45959
3.51423 3.56923 3.60616 4.45613 4.65024 4.79928 4.89053 4.92270
5.06029 5.14916 5.15986 5.26955 5.28420 5.39949 5.45359 5.55945
5.78555 5.93370 5.98677 6.13777 6.22395 6.26466 6.27669 6.32851
6.43421 6.50380 6.54847 6.64405 6.89539 6.97756 7.01247 7.10564
7.79118 7.95528 8.09657 8.44601 8.49457 9.05862 9.80419 10.27333
11.14807
Molecular weight = 326.13amu
Principal moments of inertia in cm(-1)
A = 0.012646 B = 0.005946 C = 0.004894
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2213.656905 B = 4707.955109 C = 5720.343914
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C 0.162 3.838
3 H 0.026 0.974
4 C -0.131 4.131
5 C -0.118 4.118
6 C 0.125 3.875
7 H 0.079 0.921
8 N -0.684 5.684
9 C 0.595 3.405
10 O -0.522 6.522
11 C -0.010 4.010
12 C -0.117 4.117
13 Cl 0.020 6.980
14 C 0.016 3.984
15 N -0.280 5.280
16 N -0.273 5.273
17 C 0.090 3.910
18 C 0.133 3.867
19 N -0.588 5.588
20 C -0.272 4.272
21 H 0.075 0.925
22 C 0.057 3.943
23 N -0.868 5.868
24 Si 0.837 3.163
25 H -0.291 1.291
26 H -0.299 1.299
27 H -0.263 1.263
28 H 0.055 0.945
29 H 0.062 0.938
30 H 0.036 0.964
31 H 0.056 0.944
32 H 0.057 0.943
33 H 0.055 0.945
34 H 0.073 0.927
35 H 0.401 0.599
36 H 0.192 0.808
37 H 0.086 0.914
38 H 0.101 0.899
39 H 0.092 0.908
40 H 0.032 0.968
41 H 0.076 0.924
42 H 0.260 0.740
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.966 -5.620 -14.163 15.745
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.190 4.190
2 C 0.056 3.944
3 H 0.044 0.956
4 C -0.170 4.170
5 C -0.156 4.156
6 C 0.019 3.981
7 H 0.097 0.903
8 N -0.335 5.335
9 C 0.376 3.624
10 O -0.396 6.396
11 C -0.140 4.140
12 C -0.154 4.154
13 Cl 0.049 6.951
14 C -0.162 4.162
15 N -0.111 5.111
16 N -0.062 5.062
17 C -0.050 4.050
18 C 0.006 3.994
19 N -0.313 5.313
20 C -0.399 4.399
21 H 0.092 0.908
22 C -0.146 4.146
23 N -0.506 5.506
24 Si 0.664 3.336
25 H -0.219 1.219
26 H -0.226 1.226
27 H -0.188 1.188
28 H 0.074 0.926
29 H 0.081 0.919
30 H 0.055 0.945
31 H 0.074 0.926
32 H 0.076 0.924
33 H 0.073 0.927
34 H 0.092 0.908
35 H 0.236 0.764
36 H 0.209 0.791
37 H 0.105 0.895
38 H 0.120 0.880
39 H 0.110 0.890
40 H 0.049 0.951
41 H 0.094 0.906
42 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges 4.993 -6.171 -14.338 16.389
hybrid contribution -0.147 1.383 1.116 1.783
sum 4.846 -4.788 -13.222 14.874
Atomic orbital electron populations
1.21740 0.95406 1.01727 1.00085 1.20584 0.93563 0.93312 0.86917
0.95649 1.22054 0.94764 1.00988 0.99217 1.21692 0.97381 1.00099
0.96409 1.21649 0.96826 0.81634 0.97962 0.90288 1.45798 1.29203
1.08051 1.50398 1.16695 0.82966 0.82238 0.80473 1.90833 1.27671
1.84856 1.36249 1.21348 1.03611 0.94672 0.94375 1.21632 1.01765
0.95699 0.96343 1.98501 1.79203 1.84845 1.32537 1.23493 1.02007
0.96979 0.93723 1.73140 1.08714 1.08851 1.20388 1.45371 1.31505
1.09002 1.20364 1.22178 0.91292 1.04005 0.87554 1.21706 0.85550
0.96663 0.95474 1.44288 1.01935 1.64996 1.20040 1.18425 1.02056
1.35360 0.84103 0.90782 1.25533 0.96418 0.96633 0.96036 1.70079
1.46501 1.30889 1.03090 0.87461 0.80695 0.87293 0.78146 1.21862
1.22582 1.18823 0.92610 0.91861 0.94548 0.92554 0.92433 0.92654
0.90828 0.76367 0.79083 0.89527 0.88014 0.88977 0.95072 0.90586
0.92992
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.29 8.07 37.16 0.30 -1.99 16
2 C 0.16 2.90 3.50 -67.60 -0.24 2.67 16
3 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16
4 C -0.13 -1.85 5.20 -26.61 -0.14 -1.99 16
5 C -0.12 -1.56 5.59 -26.69 -0.15 -1.71 16
6 C 0.13 2.07 2.77 -67.81 -0.19 1.88 16
7 H 0.08 1.29 7.66 -51.93 -0.40 0.89 16
8 N -0.68 -11.31 4.91 -54.89 -0.27 -11.58 16
9 C 0.59 10.96 7.06 -12.70 -0.09 10.87 16
10 O -0.52 -11.38 16.80 5.24 0.09 -11.30 16
11 C -0.01 -0.18 6.72 -82.00 -0.55 -0.73 16
12 C -0.12 -2.03 6.89 -38.88 -0.27 -2.30 16
13 Cl 0.02 0.41 29.24 -51.86 -1.52 -1.11 16
14 C 0.02 0.24 12.04 -17.39 -0.21 0.03 16
15 N -0.28 -4.03 11.89 30.61 0.36 -3.67 16
16 N -0.27 -3.80 3.75 -63.85 -0.24 -4.04 16
17 C 0.09 0.82 11.10 59.85 0.66 1.48 16
18 C 0.13 2.80 4.21 -3.71 -0.02 2.78 16
19 N -0.59 -12.75 2.38 -164.77 -0.39 -13.14 16
20 C -0.27 -6.97 8.43 -15.06 -0.13 -7.10 16
21 H 0.07 2.06 6.81 -52.49 -0.36 1.70 16
22 C 0.06 1.58 4.82 -17.43 -0.08 1.49 16
23 N -0.87 -25.19 13.97 55.49 0.78 -24.41 16
24 Si 0.84 21.38 27.40 -169.99 -4.66 16.72 16
25 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16
26 H -0.30 -7.92 7.11 56.52 0.40 -7.52 16
27 H -0.26 -6.46 5.26 56.52 0.30 -6.16 16
28 H 0.05 1.02 7.38 -51.93 -0.38 0.63 16
29 H 0.06 1.22 7.71 -51.93 -0.40 0.82 16
30 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16
31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16
32 H 0.06 0.83 6.40 -51.93 -0.33 0.50 16
33 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16
34 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16
35 H 0.40 6.21 6.76 -40.82 -0.28 5.93 16
36 H 0.19 2.15 8.06 -52.48 -0.42 1.73 16
37 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16
38 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16
39 H 0.09 0.73 7.94 -51.93 -0.41 0.32 16
40 H 0.03 0.67 6.71 -51.93 -0.35 0.32 16
41 H 0.08 1.90 6.99 -51.93 -0.36 1.54 16
42 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16
LS Contribution 353.93 15.07 5.33 5.33
Total: -1.00 -32.07 353.93 -7.50 -39.57
By element:
Atomic # 1 Polarization: 8.14 SS G_CDS: -5.89 Total: 2.25 kcal
Atomic # 6 Polarization: 6.48 SS G_CDS: -1.09 Total: 5.38 kcal
Atomic # 7 Polarization: -57.09 SS G_CDS: 0.24 Total: -56.85 kcal
Atomic # 8 Polarization: -11.38 SS G_CDS: 0.09 Total: -11.30 kcal
Atomic # 14 Polarization: 21.38 SS G_CDS: -4.66 Total: 16.72 kcal
Atomic # 17 Polarization: 0.41 SS G_CDS: -1.52 Total: -1.11 kcal
Total LS contribution 5.33 Total: 5.33 kcal
Total: -32.07 -7.50 -39.57 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001071514010.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 107.282 kcal
(2) G-P(sol) polarization free energy of solvation -32.071 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.211 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.498 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.569 kcal
(6) G-S(sol) free energy of system = (1) + (5) 67.713 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds