Wall clock time and date at job start Tue Mar 31 2020 15:28:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.08992 * 109.70143 * 2 1
4 4 C 1.53191 * 109.58506 * 239.63928 * 2 1 3
5 5 C 1.53043 * 109.31173 * 185.57974 * 4 2 1
6 6 C 1.53042 * 109.52686 * 61.37091 * 5 4 2
7 7 H 1.08998 * 109.49751 * 178.67494 * 6 5 4
8 8 N 1.46502 * 109.49554 * 58.58456 * 6 5 4
9 9 C 1.34771 * 120.00067 * 154.99897 * 8 6 5
10 10 O 1.21638 * 119.99984 * 5.10688 * 9 8 6
11 11 C 1.47031 * 119.99931 * 185.10590 * 9 8 6
12 12 C 1.38546 * 126.90597 * 265.24935 * 11 9 8
13 13 Cl 1.73600 * 127.33460 * 0.02562 * 12 11 9
14 14 C 1.39803 * 105.32740 * 179.86196 * 12 11 9
15 15 N 1.30832 * 107.87459 * 0.40927 * 14 12 11
16 16 N 1.28432 * 110.98482 * 359.74194 * 15 14 12
17 17 C 1.46500 * 125.18944 * 180.02562 * 16 15 14
18 18 C 1.53185 * 109.31265 * 298.61462 * 6 5 4
19 19 N 1.46927 * 109.58231 * 120.35476 * 2 1 3
20 20 C 1.36932 * 120.63419 * 353.36842 * 19 2 1
21 21 H 1.08000 * 119.99863 * 41.22054 * 20 19 2
22 22 C 1.38818 * 120.00255 * 221.21398 * 20 19 2
23 23 N 1.31618 * 119.99844 * 214.99975 * 22 20 19
24 24 Si 1.86798 * 119.99820 * 35.00062 * 22 20 19
25 25 H 1.48494 * 109.47079 * 84.91554 * 24 22 20
26 26 H 1.48501 * 109.47158 * 204.91530 * 24 22 20
27 27 H 1.48503 * 109.47083 * 324.91236 * 24 22 20
28 28 H 1.08998 * 109.47194 * 180.35934 * 1 2 3
29 29 H 1.08998 * 109.47328 * 300.35989 * 1 2 3
30 30 H 1.08998 * 109.47105 * 60.35742 * 1 2 3
31 31 H 1.08999 * 109.49872 * 65.62795 * 4 2 1
32 32 H 1.09000 * 109.52897 * 305.54617 * 4 2 1
33 33 H 1.08996 * 109.45963 * 181.39077 * 5 4 2
34 34 H 1.09004 * 109.45875 * 301.35800 * 5 4 2
35 35 H 0.97006 * 119.99626 * 334.99567 * 8 6 5
36 36 H 1.08005 * 126.06547 * 180.18341 * 14 12 11
37 37 H 1.09001 * 109.46748 * 264.63534 * 17 16 15
38 38 H 1.08998 * 109.47386 * 24.63948 * 17 16 15
39 39 H 1.08999 * 109.47205 * 144.64127 * 17 16 15
40 40 H 1.08999 * 109.60383 * 294.86581 * 18 6 5
41 41 H 1.09005 * 109.70252 * 174.50316 * 18 6 5
42 42 H 0.97005 * 119.99713 * 179.97438 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8975 1.0261 0.0000
4 6 2.0435 -0.7295 -1.2453
5 6 3.5675 -0.8481 -1.1700
6 6 3.9566 -1.6659 0.0636
7 1 5.0408 -1.7701 0.1040
8 7 3.3400 -2.9926 -0.0148
9 6 3.8962 -4.0337 0.6356
10 8 4.8554 -3.8548 1.3619
11 6 3.3436 -5.3858 0.4671
12 6 2.4160 -6.0130 1.2830
13 17 1.6654 -5.3714 2.7108
14 6 2.2103 -7.2713 0.7093
15 7 2.9721 -7.3586 -0.3508
16 7 3.6464 -6.2792 -0.5229
17 6 4.5947 -6.0410 -1.6138
18 6 3.4651 -0.9469 1.3238
19 7 2.0225 -0.6996 1.1945
20 6 1.1537 -1.1126 2.1690
21 1 0.2056 -1.5522 1.8963
22 6 1.4915 -0.9664 3.5075
23 7 1.1125 -1.8717 4.3845
24 14 2.4839 0.5151 4.0639
25 1 1.5692 1.6576 4.3152
26 1 3.2137 0.1812 5.3133
27 1 3.4579 0.8843 3.0054
28 1 -0.3633 -1.0276 0.0064
29 1 -0.3634 0.5194 0.8867
30 1 -0.3633 0.5083 -0.8932
31 1 1.7660 -0.1670 -2.1368
32 1 1.6030 -1.7254 -1.2918
33 1 3.9378 -1.3450 -2.0668
34 1 4.0061 0.1472 -1.0991
35 1 2.5313 -3.1215 -0.5348
36 1 1.5438 -8.0369 1.0781
37 1 5.6041 -6.2751 -1.2753
38 1 4.3396 -6.6760 -2.4622
39 1 4.5462 -4.9947 -1.9155
40 1 3.9903 0.0020 1.4317
41 1 3.6520 -1.5696 2.1987
42 1 1.3489 -1.7697 5.3198
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001071514010.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 15:28:27
Heat of formation + Delta-G solvation = 45.672608 kcal
Electronic energy + Delta-G solvation = -27234.303020 eV
Core-core repulsion = 23470.194620 eV
Total energy + Delta-G solvation = -3764.108400 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 326.125 amu
Computer time = 1.58 seconds
Orbital eigenvalues (eV)
-43.63199 -40.98062 -39.18163 -37.44932 -35.84517 -34.45713 -34.34386 -32.75719
-32.44146 -31.28516 -28.13795 -27.90300 -26.58885 -24.68645 -23.95136 -22.78706
-22.02802 -21.35708 -20.50948 -19.37140 -18.36467 -17.49074 -17.27614 -16.92202
-16.71980 -16.21923 -16.07891 -15.47831 -15.31083 -15.16389 -14.85037 -14.68859
-14.37415 -14.19554 -14.04852 -13.83009 -13.57327 -13.38844 -12.95314 -12.76623
-12.70185 -12.66729 -12.56679 -12.43407 -12.16226 -11.76872 -11.58769 -11.47540
-11.42406 -11.22674 -11.10120 -10.43185 -10.32889 -10.06416 -9.77198 -8.47415
-8.13038 -5.35675 0.37160 0.84073 1.31131 1.36860 1.40154 1.44536
1.49106 1.74973 2.27694 2.54667 3.05163 3.46496 3.51186 3.54242
3.94848 4.02766 4.07214 4.17364 4.23995 4.33921 4.37866 4.41247
4.54088 4.61907 4.67551 4.75932 4.86110 5.00563 5.04658 5.11163
5.14338 5.15466 5.26399 5.31423 5.51007 5.57108 5.59364 5.69237
6.03417 6.39453 6.41882 6.79496 7.05398 7.14108 7.80025 8.29348
9.04640
Molecular weight = 326.13amu
Principal moments of inertia in cm(-1)
A = 0.012646 B = 0.005946 C = 0.004894
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2213.656905 B = 4707.955109 C = 5720.343914
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.126 4.126
2 C 0.152 3.848
3 H 0.033 0.967
4 C -0.122 4.122
5 C -0.108 4.108
6 C 0.130 3.870
7 H 0.085 0.915
8 N -0.672 5.672
9 C 0.597 3.403
10 O -0.563 6.563
11 C -0.025 4.025
12 C -0.140 4.140
13 Cl -0.015 7.015
14 C 0.020 3.980
15 N -0.273 5.273
16 N -0.260 5.260
17 C 0.075 3.925
18 C 0.133 3.867
19 N -0.598 5.598
20 C -0.236 4.236
21 H 0.048 0.952
22 C 0.007 3.993
23 N -0.908 5.908
24 Si 0.880 3.120
25 H -0.296 1.296
26 H -0.317 1.317
27 H -0.247 1.247
28 H 0.040 0.960
29 H 0.033 0.967
30 H 0.075 0.925
31 H 0.093 0.907
32 H 0.055 0.945
33 H 0.094 0.906
34 H 0.086 0.914
35 H 0.408 0.592
36 H 0.220 0.780
37 H 0.097 0.903
38 H 0.130 0.870
39 H 0.106 0.894
40 H 0.032 0.968
41 H 0.027 0.973
42 H 0.252 0.748
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.842 -5.332 -18.453 19.808
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C 0.048 3.952
3 H 0.050 0.950
4 C -0.161 4.161
5 C -0.146 4.146
6 C 0.024 3.976
7 H 0.103 0.897
8 N -0.323 5.323
9 C 0.379 3.621
10 O -0.440 6.440
11 C -0.156 4.156
12 C -0.178 4.178
13 Cl 0.014 6.986
14 C -0.157 4.157
15 N -0.105 5.105
16 N -0.049 5.049
17 C -0.063 4.063
18 C 0.006 3.994
19 N -0.323 5.323
20 C -0.366 4.366
21 H 0.065 0.935
22 C -0.193 4.193
23 N -0.550 5.550
24 Si 0.708 3.292
25 H -0.224 1.224
26 H -0.245 1.245
27 H -0.171 1.171
28 H 0.059 0.941
29 H 0.052 0.948
30 H 0.094 0.906
31 H 0.111 0.889
32 H 0.073 0.927
33 H 0.112 0.888
34 H 0.105 0.895
35 H 0.245 0.755
36 H 0.236 0.764
37 H 0.115 0.885
38 H 0.149 0.851
39 H 0.124 0.876
40 H 0.049 0.951
41 H 0.046 0.954
42 H 0.061 0.939
Dipole moment (debyes) X Y Z Total
from point charges 5.875 -5.853 -18.714 20.470
hybrid contribution -0.415 1.267 2.310 2.668
sum 5.459 -4.586 -16.404 17.886
Atomic orbital electron populations
1.21678 0.95238 1.00851 1.00602 1.20888 0.93861 0.93784 0.86698
0.94962 1.21958 0.95205 1.00790 0.98131 1.21694 0.96748 1.00406
0.95704 1.21600 0.97069 0.81454 0.97446 0.89662 1.45770 1.29123
1.07743 1.49622 1.16902 0.82348 0.83111 0.79705 1.90811 1.29657
1.85571 1.38009 1.21187 1.04073 0.94651 0.95702 1.21803 1.02946
0.97175 0.95873 1.98487 1.79940 1.85443 1.34725 1.23898 1.02139
0.96424 0.93251 1.73176 1.08556 1.08686 1.20049 1.45822 1.31094
1.07831 1.20127 1.22670 0.90819 1.05759 0.87013 1.21587 0.85268
0.96314 0.96200 1.44397 1.01714 1.65771 1.20400 1.18269 1.01111
1.32572 0.84637 0.93451 1.25958 0.98239 0.98393 0.96682 1.70184
1.49499 1.32450 1.02853 0.86750 0.79771 0.85154 0.77478 1.22394
1.24479 1.17127 0.94111 0.94800 0.90632 0.88864 0.92656 0.88783
0.89548 0.75522 0.76354 0.88462 0.85118 0.87564 0.95055 0.95428
0.93877
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -4.15 8.07 71.98 0.58 -3.57 16
2 C 0.15 5.04 3.50 44.98 0.16 5.19 16
3 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16
4 C -0.12 -2.86 5.20 30.67 0.16 -2.70 16
5 C -0.11 -2.32 5.59 30.62 0.17 -2.15 16
6 C 0.13 4.01 2.77 45.07 0.12 4.13 16
7 H 0.09 2.59 7.66 -2.39 -0.02 2.57 16
8 N -0.67 -21.18 4.91 -445.83 -2.19 -23.36 16
9 C 0.60 21.74 7.06 86.55 0.61 22.35 16
10 O -0.56 -24.91 16.80 -4.15 -0.07 -24.98 16
11 C -0.03 -0.84 6.72 40.76 0.27 -0.56 16
12 C -0.14 -4.87 6.89 22.72 0.16 -4.72 16
13 Cl -0.01 -0.61 29.24 -2.72 -0.08 -0.68 16
14 C 0.02 0.55 12.04 85.22 1.03 1.58 16
15 N -0.27 -7.23 11.89 -57.07 -0.68 -7.91 16
16 N -0.26 -6.64 3.75 -355.92 -1.34 -7.97 16
17 C 0.08 1.11 11.10 127.77 1.42 2.53 16
18 C 0.13 5.52 4.21 86.36 0.36 5.89 16
19 N -0.60 -25.56 2.38 -675.22 -1.61 -27.17 16
20 C -0.24 -12.43 8.43 84.04 0.71 -11.72 16
21 H 0.05 2.75 6.81 -2.91 -0.02 2.73 16
22 C 0.01 0.37 4.82 84.86 0.41 0.78 16
23 N -0.91 -55.50 13.97 21.65 0.30 -55.20 16
24 Si 0.88 45.55 27.40 68.60 1.88 47.43 16
25 H -0.30 -15.38 7.11 99.48 0.71 -14.67 16
26 H -0.32 -17.22 7.11 99.48 0.71 -16.51 16
27 H -0.25 -11.93 5.26 99.48 0.52 -11.41 16
28 H 0.04 1.44 7.38 -2.39 -0.02 1.42 16
29 H 0.03 1.28 7.71 -2.39 -0.02 1.27 16
30 H 0.07 1.88 8.14 -2.39 -0.02 1.87 16
31 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16
32 H 0.05 1.36 6.40 -2.39 -0.02 1.34 16
33 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16
34 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16
35 H 0.41 11.72 6.76 -92.70 -0.63 11.09 16
36 H 0.22 4.54 8.06 -2.91 -0.02 4.52 16
37 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16
38 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16
39 H 0.11 1.29 7.94 -2.39 -0.02 1.27 16
40 H 0.03 1.30 6.71 -2.39 -0.02 1.29 16
41 H 0.03 1.41 6.99 -2.38 -0.02 1.39 16
42 H 0.25 15.20 8.31 -92.70 -0.77 14.43 16
Total: -1.00 -74.60 353.93 2.62 -71.98
By element:
Atomic # 1 Polarization: 10.59 SS G_CDS: 0.24 Total: 10.83 kcal
Atomic # 6 Polarization: 10.88 SS G_CDS: 6.16 Total: 17.04 kcal
Atomic # 7 Polarization: -116.10 SS G_CDS: -5.51 Total: -121.61 kcal
Atomic # 8 Polarization: -24.91 SS G_CDS: -0.07 Total: -24.98 kcal
Atomic # 14 Polarization: 45.55 SS G_CDS: 1.88 Total: 47.43 kcal
Atomic # 17 Polarization: -0.61 SS G_CDS: -0.08 Total: -0.68 kcal
Total: -74.60 2.62 -71.98 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001071514010.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 117.654 kcal
(2) G-P(sol) polarization free energy of solvation -74.600 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.054 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.618 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.982 kcal
(6) G-S(sol) free energy of system = (1) + (5) 45.673 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.58 seconds