Wall clock time and date at job start Tue Mar 31 2020 16:24:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53007 * 1
3 3 H 1.09004 * 109.87402 * 2 1
4 4 C 1.54327 * 110.01012 * 238.90489 * 2 1 3
5 5 H 1.08996 * 110.71695 * 336.67666 * 4 2 1
6 6 N 1.46497 * 110.71993 * 99.77315 * 4 2 1
7 7 C 1.34775 * 119.99911 * 204.99469 * 6 4 2
8 8 O 1.21476 * 120.00073 * 0.02562 * 7 6 4
9 9 C 1.48457 * 120.00020 * 180.02562 * 7 6 4
10 10 C 1.39532 * 120.55042 * 179.72505 * 9 7 6
11 11 C 1.38769 * 118.26491 * 179.76242 * 10 9 7
12 12 C 1.50692 * 120.42992 * 180.28054 * 11 10 9
13 13 F 1.39899 * 109.47205 * 210.23996 * 12 11 10
14 14 F 1.39901 * 109.47162 * 330.23574 * 12 11 10
15 15 N 1.32211 * 119.14160 * 0.51589 * 11 10 9
16 16 C 1.31879 * 121.03950 * 359.74467 * 15 11 10
17 17 N 1.31584 * 121.91590 * 359.97438 * 16 15 11
18 18 C 1.55155 * 102.93990 * 218.31502 * 4 2 1
19 19 C 1.54910 * 101.58186 * 35.50139 * 18 4 2
20 20 N 1.47015 * 109.88376 * 121.01554 * 2 1 3
21 21 C 1.36936 * 125.65322 * 298.49370 * 20 2 1
22 22 H 1.08005 * 119.99808 * 359.97438 * 21 20 2
23 23 C 1.38810 * 120.00640 * 179.97438 * 21 20 2
24 24 N 1.31625 * 119.99418 * 359.97438 * 23 21 20
25 25 Si 1.86800 * 120.00271 * 180.02562 * 23 21 20
26 26 H 1.48493 * 109.47325 * 89.99936 * 25 23 21
27 27 H 1.48505 * 109.46874 * 209.99981 * 25 23 21
28 28 H 1.48496 * 109.46999 * 329.99736 * 25 23 21
29 29 H 1.08994 * 109.46997 * 300.43757 * 1 2 3
30 30 H 1.08998 * 109.46806 * 60.43424 * 1 2 3
31 31 H 1.08997 * 109.46615 * 180.43487 * 1 2 3
32 32 H 0.97001 * 120.00432 * 25.00685 * 6 4 2
33 33 H 1.08001 * 120.87022 * 359.97438 * 10 9 7
34 34 H 1.09000 * 109.47235 * 90.23302 * 12 11 10
35 35 H 1.07997 * 119.04312 * 179.97438 * 16 15 11
36 36 H 1.08999 * 111.00406 * 277.42751 * 18 4 2
37 37 H 1.09005 * 111.00498 * 153.57267 * 18 4 2
38 38 H 1.08998 * 110.36709 * 204.15043 * 19 18 4
39 39 H 1.09005 * 110.36466 * 81.82577 * 19 18 4
40 40 H 0.96997 * 119.99243 * 180.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.9006 1.0251 0.0000
4 6 2.0582 -0.7489 -1.2417
5 1 1.3104 -1.4471 -1.6178
6 7 2.4541 0.1970 -2.2880
7 6 2.4584 -0.1894 -3.5792
8 8 2.1335 -1.3218 -3.8754
9 6 2.8601 0.7689 -4.6394
10 6 2.8742 0.3795 -5.9792
11 6 3.2528 1.3151 -6.9316
12 6 3.2793 0.9487 -8.3931
13 9 4.2686 1.6945 -9.0429
14 9 3.5603 -0.4152 -8.5269
15 7 3.5945 2.5306 -6.5397
16 6 3.5753 2.8644 -5.2640
17 7 3.2180 2.0121 -4.3273
18 6 3.2919 -1.5107 -0.6895
19 6 2.8177 -1.8762 0.7393
20 7 2.0301 -0.7124 1.1848
21 6 1.8024 -0.3541 2.4867
22 1 1.2098 0.5208 2.7103
23 6 2.3330 -1.1152 3.5192
24 7 3.0547 -2.1817 3.2467
25 14 2.0217 -0.6267 5.2951
26 1 0.7821 -1.2851 5.7796
27 1 3.1698 -1.0541 6.1345
28 1 1.8660 0.8475 5.3830
29 1 -0.3633 0.5206 0.8860
30 1 -0.3633 0.5071 -0.8938
31 1 -0.3632 -1.0276 0.0078
32 1 2.7133 1.1013 -2.0516
33 1 2.5945 -0.6229 -6.2679
34 1 2.3088 1.1652 -8.8396
35 1 3.8611 3.8663 -4.9798
36 1 4.1682 -0.8633 -0.6566
37 1 3.4922 -2.4073 -1.2760
38 1 3.6743 -2.0284 1.3959
39 1 2.1937 -2.7697 0.7149
40 1 3.4252 -2.7137 3.9682
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001088661814.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 16:24:25
Heat of formation + Delta-G solvation = -52.326512 kcal
Electronic energy + Delta-G solvation = -27114.600282 eV
Core-core repulsion = 22794.445641 eV
Total energy + Delta-G solvation = -4320.154641 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 326.130 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-49.53668 -47.53908 -41.72631 -39.66618 -37.66501 -34.89988 -34.06671 -32.97376
-32.02208 -30.43986 -28.80344 -28.17082 -25.99420 -24.49434 -24.06232 -23.81555
-21.15175 -20.29233 -19.94868 -18.72416 -18.53858 -18.10293 -17.35398 -16.85053
-16.27363 -16.05145 -15.98679 -15.65868 -15.36723 -14.78188 -14.48155 -14.33449
-14.09940 -13.95953 -13.84869 -13.44899 -13.41164 -12.86473 -12.20097 -12.16692
-12.06654 -11.63509 -11.56236 -11.30386 -11.19040 -10.91974 -10.90155 -10.70948
-10.63026 -10.33286 -10.31499 -10.12647 -9.86416 -9.76842 -9.60872 -8.81705
-8.68277 -6.91995 -5.69291 -3.12269 -0.04392 0.17486 2.44069 2.59430
2.81556 3.30804 3.37566 3.41644 3.42640 3.44535 3.49116 3.69766
4.08162 4.30158 4.39223 4.43400 4.49448 4.87459 5.01047 5.20410
5.36924 5.46849 5.55645 5.58724 5.73553 6.06646 6.12610 6.17243
6.23398 6.26858 6.43200 6.52326 6.63231 6.79277 7.00609 7.27854
7.45528 7.53585 7.58580 7.80743 8.05118 8.30824 9.16662 9.77438
10.40666 11.34239
Molecular weight = 326.13amu
Principal moments of inertia in cm(-1)
A = 0.031282 B = 0.002377 C = 0.002318
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 894.859562 B =11775.887707 C =12074.285371
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C 0.155 3.845
3 H 0.038 0.962
4 C 0.130 3.870
5 H 0.098 0.902
6 N -0.685 5.685
7 C 0.565 3.435
8 O -0.522 6.522
9 C 0.147 3.853
10 C -0.141 4.141
11 C 0.097 3.903
12 C 0.331 3.669
13 F -0.181 7.181
14 F -0.186 7.186
15 N -0.481 5.481
16 C 0.302 3.698
17 N -0.481 5.481
18 C -0.153 4.153
19 C 0.153 3.847
20 N -0.595 5.595
21 C -0.221 4.221
22 H 0.078 0.922
23 C -0.010 4.010
24 N -0.921 5.921
25 Si 0.915 3.085
26 H -0.289 1.289
27 H -0.290 1.290
28 H -0.281 1.281
29 H 0.055 0.945
30 H 0.037 0.963
31 H 0.052 0.948
32 H 0.410 0.590
33 H 0.171 0.829
34 H 0.140 0.860
35 H 0.213 0.787
36 H 0.063 0.937
37 H 0.063 0.937
38 H 0.110 0.890
39 H 0.016 0.984
40 H 0.253 0.747
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.350 8.507 -21.747 23.354
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.215 4.215
2 C 0.047 3.953
3 H 0.055 0.945
4 C 0.026 3.974
5 H 0.116 0.884
6 N -0.335 5.335
7 C 0.347 3.653
8 O -0.398 6.398
9 C -0.002 4.002
10 C -0.164 4.164
11 C -0.052 4.052
12 C 0.276 3.724
13 F -0.162 7.162
14 F -0.167 7.167
15 N -0.195 5.195
16 C 0.014 3.986
17 N -0.197 5.197
18 C -0.193 4.193
19 C 0.028 3.972
20 N -0.320 5.320
21 C -0.349 4.349
22 H 0.096 0.904
23 C -0.206 4.206
24 N -0.569 5.569
25 Si 0.745 3.255
26 H -0.216 1.216
27 H -0.217 1.217
28 H -0.207 1.207
29 H 0.075 0.925
30 H 0.056 0.944
31 H 0.071 0.929
32 H 0.247 0.753
33 H 0.189 0.811
34 H 0.157 0.843
35 H 0.229 0.771
36 H 0.082 0.918
37 H 0.082 0.918
38 H 0.128 0.872
39 H 0.034 0.966
40 H 0.063 0.937
Dipole moment (debyes) X Y Z Total
from point charges -0.244 8.492 -21.412 23.036
hybrid contribution -0.185 -0.106 0.760 0.789
sum -0.429 8.385 -20.652 22.294
Atomic orbital electron populations
1.22243 0.97752 1.01456 1.00047 1.20989 0.92678 0.94905 0.86701
0.94450 1.22332 0.98091 0.90725 0.86211 0.88410 1.45950 1.65387
1.16894 1.05230 1.17640 0.79072 0.86103 0.82487 1.90820 1.48094
1.18768 1.82080 1.21876 0.93529 0.91387 0.93382 1.22697 0.98034
1.02731 0.92924 1.22210 0.95568 0.90847 0.96584 1.20051 0.92039
0.73358 0.86963 1.93064 1.64991 1.76159 1.82026 1.93071 1.95172
1.32319 1.96187 1.68025 1.12876 1.17866 1.20762 1.25123 0.91172
0.99617 0.82640 1.68422 1.09638 1.02508 1.39148 1.23430 0.96592
0.99335 0.99951 1.21961 0.97421 0.88448 0.89357 1.44480 1.59083
1.28397 1.00040 1.19019 1.27137 1.08303 0.80431 0.90408 1.24792
1.00288 0.97386 0.98091 1.69789 1.39002 1.17930 1.30208 0.86072
0.77261 0.77739 0.84405 1.21629 1.21660 1.20700 0.92544 0.94364
0.92863 0.75336 0.81142 0.84347 0.77102 0.91795 0.91809 0.87208
0.96614 0.93650
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.80 9.15 37.16 0.34 -2.46 16
2 C 0.16 3.03 3.47 -66.95 -0.23 2.80 16
3 H 0.04 0.72 7.72 -51.93 -0.40 0.32 16
4 C 0.13 2.29 2.84 -66.10 -0.19 2.10 16
5 H 0.10 1.80 7.26 -51.93 -0.38 1.43 16
6 N -0.69 -10.01 5.18 -52.78 -0.27 -10.29 16
7 C 0.56 8.17 7.83 -12.05 -0.09 8.07 16
8 O -0.52 -8.90 16.07 5.39 0.09 -8.82 16
9 C 0.15 1.74 6.79 -82.63 -0.56 1.18 16
10 C -0.14 -1.42 9.07 -38.90 -0.35 -1.77 16
11 C 0.10 0.87 6.61 -82.24 -0.54 0.33 16
12 C 0.33 2.28 5.74 36.00 0.21 2.48 16
13 F -0.18 -1.62 17.09 2.25 0.04 -1.58 16
14 F -0.19 -1.54 16.55 2.25 0.04 -1.50 16
15 N -0.48 -4.52 10.08 -10.81 -0.11 -4.63 16
16 C 0.30 2.60 12.28 -92.26 -1.13 1.47 16
17 N -0.48 -5.10 9.70 -11.14 -0.11 -5.21 16
18 C -0.15 -2.94 6.77 -24.58 -0.17 -3.11 16
19 C 0.15 3.63 5.89 -2.53 -0.01 3.62 16
20 N -0.59 -14.46 3.13 -162.57 -0.51 -14.96 16
21 C -0.22 -5.88 9.87 -15.06 -0.15 -6.03 16
22 H 0.08 2.00 7.83 -52.48 -0.41 1.59 16
23 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16
24 N -0.92 -26.24 10.09 55.49 0.56 -25.68 16
25 Si 0.91 21.60 29.55 -169.99 -5.02 16.57 16
26 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16
27 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16
28 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16
29 H 0.06 1.05 8.02 -51.93 -0.42 0.63 16
30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16
31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16
32 H 0.41 5.42 7.75 -40.82 -0.32 5.10 16
33 H 0.17 1.60 7.37 -52.49 -0.39 1.21 16
34 H 0.14 0.41 8.14 -51.93 -0.42 -0.02 16
35 H 0.21 1.04 8.06 -52.49 -0.42 0.61 16
36 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16
37 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16
38 H 0.11 2.93 5.88 -51.93 -0.31 2.63 16
39 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16
40 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16
LS Contribution 347.61 15.07 5.24 5.24
Total: -1.00 -31.42 347.61 -7.75 -39.17
By element:
Atomic # 1 Polarization: 8.09 SS G_CDS: -4.71 Total: 3.39 kcal
Atomic # 6 Polarization: 11.29 SS G_CDS: -2.98 Total: 8.31 kcal
Atomic # 7 Polarization: -60.34 SS G_CDS: -0.44 Total: -60.78 kcal
Atomic # 8 Polarization: -8.90 SS G_CDS: 0.09 Total: -8.82 kcal
Atomic # 9 Polarization: -3.16 SS G_CDS: 0.08 Total: -3.08 kcal
Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal
Total LS contribution 5.24 Total: 5.24 kcal
Total: -31.42 -7.75 -39.17 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001088661814.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -13.153 kcal
(2) G-P(sol) polarization free energy of solvation -31.420 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.573 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.753 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.174 kcal
(6) G-S(sol) free energy of system = (1) + (5) -52.327 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds