Wall clock time and date at job start Tue Mar 31 2020 16:24:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53007 * 1
3 3 H 1.09004 * 109.87402 * 2 1
4 4 C 1.54327 * 110.01012 * 238.90489 * 2 1 3
5 5 H 1.08996 * 110.71695 * 336.67666 * 4 2 1
6 6 N 1.46497 * 110.71993 * 99.77315 * 4 2 1
7 7 C 1.34775 * 119.99911 * 204.99469 * 6 4 2
8 8 O 1.21476 * 120.00073 * 0.02562 * 7 6 4
9 9 C 1.48457 * 120.00020 * 180.02562 * 7 6 4
10 10 C 1.39532 * 120.55042 * 179.72505 * 9 7 6
11 11 C 1.38769 * 118.26491 * 179.76242 * 10 9 7
12 12 C 1.50692 * 120.42992 * 180.28054 * 11 10 9
13 13 F 1.39899 * 109.47205 * 210.23996 * 12 11 10
14 14 F 1.39901 * 109.47162 * 330.23574 * 12 11 10
15 15 N 1.32211 * 119.14160 * 0.51589 * 11 10 9
16 16 C 1.31879 * 121.03950 * 359.74467 * 15 11 10
17 17 N 1.31584 * 121.91590 * 359.97438 * 16 15 11
18 18 C 1.55155 * 102.93990 * 218.31502 * 4 2 1
19 19 C 1.54910 * 101.58186 * 35.50139 * 18 4 2
20 20 N 1.47015 * 109.88376 * 121.01554 * 2 1 3
21 21 C 1.36936 * 125.65322 * 298.49370 * 20 2 1
22 22 H 1.08005 * 119.99808 * 359.97438 * 21 20 2
23 23 C 1.38810 * 120.00640 * 179.97438 * 21 20 2
24 24 N 1.31625 * 119.99418 * 359.97438 * 23 21 20
25 25 Si 1.86800 * 120.00271 * 180.02562 * 23 21 20
26 26 H 1.48493 * 109.47325 * 89.99936 * 25 23 21
27 27 H 1.48505 * 109.46874 * 209.99981 * 25 23 21
28 28 H 1.48496 * 109.46999 * 329.99736 * 25 23 21
29 29 H 1.08994 * 109.46997 * 300.43757 * 1 2 3
30 30 H 1.08998 * 109.46806 * 60.43424 * 1 2 3
31 31 H 1.08997 * 109.46615 * 180.43487 * 1 2 3
32 32 H 0.97001 * 120.00432 * 25.00685 * 6 4 2
33 33 H 1.08001 * 120.87022 * 359.97438 * 10 9 7
34 34 H 1.09000 * 109.47235 * 90.23302 * 12 11 10
35 35 H 1.07997 * 119.04312 * 179.97438 * 16 15 11
36 36 H 1.08999 * 111.00406 * 277.42751 * 18 4 2
37 37 H 1.09005 * 111.00498 * 153.57267 * 18 4 2
38 38 H 1.08998 * 110.36709 * 204.15043 * 19 18 4
39 39 H 1.09005 * 110.36466 * 81.82577 * 19 18 4
40 40 H 0.96997 * 119.99243 * 180.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.9006 1.0251 0.0000
4 6 2.0582 -0.7489 -1.2417
5 1 1.3104 -1.4471 -1.6178
6 7 2.4541 0.1970 -2.2880
7 6 2.4584 -0.1894 -3.5792
8 8 2.1335 -1.3218 -3.8754
9 6 2.8601 0.7689 -4.6394
10 6 2.8742 0.3795 -5.9792
11 6 3.2528 1.3151 -6.9316
12 6 3.2793 0.9487 -8.3931
13 9 4.2686 1.6945 -9.0429
14 9 3.5603 -0.4152 -8.5269
15 7 3.5945 2.5306 -6.5397
16 6 3.5753 2.8644 -5.2640
17 7 3.2180 2.0121 -4.3273
18 6 3.2919 -1.5107 -0.6895
19 6 2.8177 -1.8762 0.7393
20 7 2.0301 -0.7124 1.1848
21 6 1.8024 -0.3541 2.4867
22 1 1.2098 0.5208 2.7103
23 6 2.3330 -1.1152 3.5192
24 7 3.0547 -2.1817 3.2467
25 14 2.0217 -0.6267 5.2951
26 1 0.7821 -1.2851 5.7796
27 1 3.1698 -1.0541 6.1345
28 1 1.8660 0.8475 5.3830
29 1 -0.3633 0.5206 0.8860
30 1 -0.3633 0.5071 -0.8938
31 1 -0.3632 -1.0276 0.0078
32 1 2.7133 1.1013 -2.0516
33 1 2.5945 -0.6229 -6.2679
34 1 2.3088 1.1652 -8.8396
35 1 3.8611 3.8663 -4.9798
36 1 4.1682 -0.8633 -0.6566
37 1 3.4922 -2.4073 -1.2760
38 1 3.6743 -2.0284 1.3959
39 1 2.1937 -2.7697 0.7149
40 1 3.4252 -2.7137 3.9682
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001088661814.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 16:24:24
Heat of formation + Delta-G solvation = -72.306128 kcal
Electronic energy + Delta-G solvation = -27115.466663 eV
Core-core repulsion = 22794.445641 eV
Total energy + Delta-G solvation = -4321.021022 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 326.130 amu
Computer time = 1.31 seconds
Orbital eigenvalues (eV)
-50.12148 -48.13811 -42.52217 -40.90262 -39.21992 -35.91137 -35.38347 -33.87153
-33.64403 -32.07664 -30.54832 -28.87820 -27.22777 -25.95973 -25.50279 -24.72276
-22.40236 -21.76565 -21.51835 -19.70269 -19.31462 -18.70366 -18.64291 -18.05201
-17.51701 -17.01862 -16.75733 -16.69830 -16.57114 -16.13149 -15.74441 -15.56338
-15.41071 -14.99158 -14.90012 -14.45433 -14.39435 -14.03800 -14.01517 -13.74598
-13.25249 -12.93859 -12.76605 -12.75043 -12.61956 -12.31958 -12.28705 -12.19590
-12.04207 -11.98364 -11.62866 -11.57490 -11.46369 -11.06871 -10.73133 -10.66154
-10.16624 -8.89888 -7.74626 -5.19415 -0.87962 -0.52676 1.45447 1.49147
1.50448 1.58638 1.65798 2.05669 2.47456 2.51192 2.67409 2.86381
3.05112 3.35202 3.36766 3.55536 3.63272 3.78923 3.81550 3.85410
3.90879 4.11961 4.17758 4.34627 4.49176 4.60289 4.62892 4.78836
4.88954 4.92172 5.01560 5.07813 5.30848 5.40980 5.50464 5.54920
5.60273 5.80413 6.27663 6.31025 6.62440 6.90773 7.11764 7.79142
8.42181 9.27392
Molecular weight = 326.13amu
Principal moments of inertia in cm(-1)
A = 0.031282 B = 0.002377 C = 0.002318
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 894.859562 B =11775.887707 C =12074.285371
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C 0.151 3.849
3 H 0.050 0.950
4 C 0.149 3.851
5 H 0.091 0.909
6 N -0.679 5.679
7 C 0.569 3.431
8 O -0.551 6.551
9 C 0.134 3.866
10 C -0.142 4.142
11 C 0.102 3.898
12 C 0.330 3.670
13 F -0.193 7.193
14 F -0.195 7.195
15 N -0.486 5.486
16 C 0.305 3.695
17 N -0.490 5.490
18 C -0.139 4.139
19 C 0.158 3.842
20 N -0.614 5.614
21 C -0.226 4.226
22 H 0.085 0.915
23 C -0.069 4.069
24 N -0.951 5.951
25 Si 0.978 3.022
26 H -0.290 1.290
27 H -0.297 1.297
28 H -0.267 1.267
29 H 0.048 0.952
30 H 0.069 0.931
31 H 0.039 0.961
32 H 0.419 0.581
33 H 0.174 0.826
34 H 0.186 0.814
35 H 0.247 0.753
36 H 0.069 0.931
37 H 0.071 0.929
38 H 0.078 0.922
39 H -0.011 1.011
40 H 0.246 0.754
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.830 10.711 -23.493 25.833
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C 0.044 3.956
3 H 0.068 0.932
4 C 0.044 3.956
5 H 0.109 0.891
6 N -0.329 5.329
7 C 0.353 3.647
8 O -0.428 6.428
9 C -0.015 4.015
10 C -0.165 4.165
11 C -0.048 4.048
12 C 0.276 3.724
13 F -0.174 7.174
14 F -0.176 7.176
15 N -0.201 5.201
16 C 0.018 3.982
17 N -0.206 5.206
18 C -0.179 4.179
19 C 0.032 3.968
20 N -0.339 5.339
21 C -0.354 4.354
22 H 0.103 0.897
23 C -0.261 4.261
24 N -0.601 5.601
25 Si 0.806 3.194
26 H -0.217 1.217
27 H -0.223 1.223
28 H -0.192 1.192
29 H 0.067 0.933
30 H 0.088 0.912
31 H 0.058 0.942
32 H 0.257 0.743
33 H 0.192 0.808
34 H 0.202 0.798
35 H 0.263 0.737
36 H 0.087 0.913
37 H 0.090 0.910
38 H 0.096 0.904
39 H 0.007 0.993
40 H 0.056 0.944
Dipole moment (debyes) X Y Z Total
from point charges -0.734 10.746 -23.188 25.568
hybrid contribution -0.026 -0.736 1.205 1.412
sum -0.760 10.010 -21.984 24.167
Atomic orbital electron populations
1.22122 0.96307 1.00925 1.01236 1.21184 0.93683 0.95039 0.85698
0.93215 1.21902 0.96770 0.90705 0.86269 0.89073 1.45729 1.65634
1.16723 1.04844 1.17956 0.77996 0.86159 0.82627 1.90806 1.49210
1.20222 1.82552 1.21444 0.95337 0.91670 0.93013 1.22731 0.98138
1.03189 0.92441 1.22554 0.94355 0.90402 0.97510 1.20522 0.93461
0.72603 0.85849 1.93040 1.65851 1.76453 1.82081 1.93055 1.95345
1.33112 1.96120 1.68136 1.12786 1.17996 1.21140 1.25849 0.89835
1.00425 0.82091 1.68410 1.10095 1.02191 1.39931 1.23227 0.97419
1.00070 0.97185 1.21674 0.95762 0.87889 0.91459 1.44713 1.59580
1.28782 1.00809 1.19382 1.26228 1.08138 0.81696 0.89689 1.25599
1.00832 0.97783 1.01876 1.70037 1.40317 1.19051 1.30683 0.85081
0.76488 0.78006 0.79778 1.21721 1.22336 1.19208 0.93303 0.91179
0.94226 0.74266 0.80833 0.79765 0.73687 0.91264 0.91027 0.90445
0.99310 0.94446
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -5.09 9.15 71.98 0.66 -4.43 16
2 C 0.15 5.74 3.47 45.35 0.16 5.90 16
3 H 0.05 1.81 7.72 -2.39 -0.02 1.79 16
4 C 0.15 5.10 2.84 46.18 0.13 5.23 16
5 H 0.09 3.31 7.26 -2.39 -0.02 3.29 16
6 N -0.68 -18.82 5.18 -439.21 -2.27 -21.09 16
7 C 0.57 15.73 7.83 86.97 0.68 16.41 16
8 O -0.55 -18.36 16.07 -3.64 -0.06 -18.42 16
9 C 0.13 2.93 6.79 41.99 0.29 3.21 16
10 C -0.14 -2.61 9.07 22.71 0.21 -2.41 16
11 C 0.10 1.58 6.61 42.63 0.28 1.86 16
12 C 0.33 3.65 5.74 71.23 0.41 4.06 16
13 F -0.19 -3.01 17.09 44.97 0.77 -2.25 16
14 F -0.20 -2.84 16.55 44.97 0.74 -2.09 16
15 N -0.49 -7.80 10.08 -188.12 -1.90 -9.69 16
16 C 0.31 4.37 12.28 180.92 2.22 6.59 16
17 N -0.49 -9.26 9.70 -189.15 -1.84 -11.09 16
18 C -0.14 -5.36 6.77 31.99 0.22 -5.15 16
19 C 0.16 7.73 5.89 86.86 0.51 8.24 16
20 N -0.61 -30.11 3.13 -668.24 -2.09 -32.20 16
21 C -0.23 -12.09 9.87 84.03 0.83 -11.26 16
22 H 0.09 4.32 7.83 -2.91 -0.02 4.30 16
23 C -0.07 -3.81 5.49 84.86 0.47 -3.34 16
24 N -0.95 -56.00 10.09 21.65 0.22 -55.78 16
25 Si 0.98 44.86 29.55 68.60 2.03 46.89 16
26 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16
27 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16
28 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16
29 H 0.05 1.75 8.02 -2.39 -0.02 1.73 16
30 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16
31 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16
32 H 0.42 10.23 7.75 -92.71 -0.72 9.51 16
33 H 0.17 3.03 7.37 -2.91 -0.02 3.00 16
34 H 0.19 0.38 8.14 -2.39 -0.02 0.36 16
35 H 0.25 1.50 8.06 -2.91 -0.02 1.48 16
36 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16
37 H 0.07 2.63 8.14 -2.38 -0.02 2.61 16
38 H 0.08 4.33 5.88 -2.39 -0.01 4.31 16
39 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 16
40 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16
Total: -1.00 -69.14 347.61 3.04 -66.11
By element:
Atomic # 1 Polarization: 14.32 SS G_CDS: 0.38 Total: 14.69 kcal
Atomic # 6 Polarization: 17.88 SS G_CDS: 7.05 Total: 24.93 kcal
Atomic # 7 Polarization: -121.98 SS G_CDS: -7.88 Total: -129.86 kcal
Atomic # 8 Polarization: -18.36 SS G_CDS: -0.06 Total: -18.42 kcal
Atomic # 9 Polarization: -5.85 SS G_CDS: 1.51 Total: -4.34 kcal
Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal
Total: -69.14 3.04 -66.11 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001088661814.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -6.201 kcal
(2) G-P(sol) polarization free energy of solvation -69.142 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.342 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.036 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.105 kcal
(6) G-S(sol) free energy of system = (1) + (5) -72.306 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.32 seconds