Wall clock time and date at job start Tue Mar 31 2020 16:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08991 * 109.47566 * 2 1 4 4 N 1.46903 * 109.46748 * 239.99482 * 2 1 3 5 5 C 1.46898 * 110.99673 * 85.00509 * 4 2 1 6 6 C 1.53006 * 109.47006 * 179.97438 * 5 4 2 7 7 N 1.46496 * 109.46995 * 179.97438 * 6 5 4 8 8 C 1.34775 * 119.99642 * 180.02562 * 7 6 5 9 9 O 1.21279 * 120.00300 * 359.97438 * 8 7 6 10 10 C 1.50703 * 119.99773 * 180.02562 * 8 7 6 11 11 S 1.81000 * 109.47292 * 179.97438 * 10 8 7 12 12 C 1.76195 * 100.00388 * 180.02562 * 11 10 8 13 13 H 1.08000 * 119.99781 * 0.02562 * 12 11 10 14 14 C 1.38796 * 119.99958 * 180.02562 * 12 11 10 15 15 N 1.31623 * 120.00359 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99868 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47069 * 59.99705 * 16 14 12 18 18 H 1.48500 * 109.47125 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46965 * 300.00065 * 16 14 12 20 20 C 1.50706 * 109.46748 * 120.00132 * 2 1 3 21 21 C 1.38213 * 120.01572 * 99.72868 * 20 2 1 22 22 C 1.38221 * 120.02579 * 179.71895 * 21 20 2 23 23 C 1.38268 * 120.05233 * 0.54800 * 22 21 20 24 24 C 1.38175 * 120.02484 * 359.72477 * 23 22 21 25 25 C 1.38436 * 120.01052 * 279.99233 * 20 2 1 26 26 F 1.35107 * 120.02639 * 0.03237 * 25 20 2 27 27 H 1.08996 * 109.46768 * 60.00165 * 1 2 3 28 28 H 1.08995 * 109.47200 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46732 * 300.00617 * 1 2 3 30 30 H 1.00895 * 111.00497 * 321.04431 * 4 2 1 31 31 H 1.09001 * 109.47062 * 59.99745 * 5 4 2 32 32 H 1.08993 * 109.47084 * 299.99192 * 5 4 2 33 33 H 1.09001 * 109.46801 * 300.00064 * 6 5 4 34 34 H 1.09001 * 109.46998 * 59.99660 * 6 5 4 35 35 H 0.96998 * 120.00192 * 359.97438 * 7 6 5 36 36 H 1.09001 * 109.47354 * 299.99360 * 10 8 7 37 37 H 1.09001 * 109.46980 * 59.99839 * 10 8 7 38 38 H 0.97001 * 119.99965 * 180.02562 * 15 14 12 39 39 H 1.08006 * 119.98780 * 359.97438 * 21 20 2 40 40 H 1.08005 * 119.97581 * 180.26933 * 22 21 20 41 41 H 1.07999 * 119.98807 * 179.74544 * 23 22 21 42 42 H 1.07995 * 120.01581 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 2.0825 0.2224 -2.3469 6 6 2.5962 -0.5331 -3.5742 7 7 2.6582 0.3793 -4.7186 8 6 3.0845 -0.0696 -5.9158 9 8 3.4170 -1.2286 -6.0456 10 6 3.1489 0.8692 -7.0930 11 16 3.7564 -0.0246 -8.5450 12 6 3.7326 1.2738 -9.7358 13 1 3.4047 2.2624 -9.4502 14 6 4.1353 1.0261 -11.0407 15 7 4.5355 -0.1787 -11.3886 16 14 4.1094 2.4025 -12.3034 17 1 5.0012 3.5022 -11.8553 18 1 4.5834 1.8833 -13.6115 19 1 2.7236 2.9164 -12.4470 20 6 2.0323 -0.7105 1.2305 21 6 2.4534 -2.0242 1.1469 22 6 2.9195 -2.6742 2.2741 23 6 2.9545 -2.0148 3.4889 24 6 2.5288 -0.7032 3.5762 25 6 2.0669 -0.0492 2.4462 26 9 1.6499 1.2332 2.5304 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8900 30 1 1.4496 -1.4980 -1.4100 31 1 2.7589 1.0460 -2.1182 32 1 1.0871 0.6161 -2.5525 33 1 3.5916 -0.9266 -3.3682 34 1 1.9200 -1.3570 -3.8029 35 1 2.3919 1.3062 -4.6149 36 1 2.1535 1.2629 -7.2987 37 1 3.8254 1.6927 -6.8644 38 1 4.8172 -0.3516 -12.3006 39 1 2.4221 -2.5419 0.1995 40 1 3.2525 -3.6995 2.2070 41 1 3.3151 -2.5250 4.3699 42 1 2.5566 -0.1881 4.5250 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123806283.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:53 Heat of formation + Delta-G solvation = -61.291749 kcal Electronic energy + Delta-G solvation = -23536.651635 eV Core-core repulsion = 19750.028657 eV Total energy + Delta-G solvation = -3786.622978 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.121 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.24936 -39.77547 -39.16061 -37.39007 -34.78334 -32.43001 -32.28067 -30.95186 -30.03403 -29.16794 -27.00154 -25.46336 -24.21547 -23.16915 -22.20651 -21.17537 -20.33644 -18.10116 -17.79982 -16.86542 -16.70380 -16.25505 -16.02008 -15.92837 -15.80099 -15.12092 -14.80428 -14.67284 -14.60397 -14.39373 -13.86476 -13.74103 -13.56364 -13.33777 -13.12775 -12.71872 -12.57745 -12.48322 -12.30879 -12.18038 -11.90038 -11.60309 -11.49383 -11.16045 -11.04395 -11.03651 -10.76767 -9.82538 -9.43463 -9.31776 -9.08485 -9.06251 -8.90648 -8.87436 -8.23919 -6.49898 -6.21254 -3.92004 0.77383 0.86211 2.93762 3.09797 3.20992 3.23673 3.26255 3.29324 3.52524 3.87969 4.00159 4.19570 4.20753 4.41916 4.56978 4.59591 4.71696 4.75634 4.85310 4.91038 5.01740 5.13753 5.16964 5.20192 5.21064 5.32535 5.50582 5.60143 5.64967 5.67259 5.73887 5.78466 5.86100 5.89961 5.98623 6.05160 6.13649 6.48010 6.53319 6.61540 6.87510 7.59408 7.68501 8.35205 8.60594 9.23847 10.86099 Molecular weight = 326.12amu Principal moments of inertia in cm(-1) A = 0.033557 B = 0.001678 C = 0.001633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.212735 B =16687.196317 C =17144.582681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.126 3.874 3 H 0.092 0.908 4 N -0.678 5.678 5 C 0.049 3.951 6 C 0.123 3.877 7 N -0.739 5.739 8 C 0.533 3.467 9 O -0.516 6.516 10 C -0.153 4.153 11 S -0.060 6.060 12 C -0.537 4.537 13 H 0.072 0.928 14 C 0.074 3.926 15 N -0.867 5.867 16 Si 0.919 3.081 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.274 1.274 20 C -0.105 4.105 21 C -0.068 4.068 22 C -0.131 4.131 23 C -0.096 4.096 24 C -0.156 4.156 25 C 0.097 3.903 26 F -0.140 7.140 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.347 0.653 31 H 0.080 0.920 32 H 0.040 0.960 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.398 0.602 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.269 0.731 39 H 0.139 0.861 40 H 0.129 0.871 41 H 0.130 0.870 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.838 -0.195 30.963 31.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.016 3.984 3 H 0.110 0.890 4 N -0.309 5.309 5 C -0.080 4.080 6 C -0.002 4.002 7 N -0.394 5.394 8 C 0.319 3.681 9 O -0.390 6.390 10 C -0.304 4.304 11 S 0.167 5.833 12 C -0.685 4.685 13 H 0.090 0.910 14 C -0.136 4.136 15 N -0.503 5.503 16 Si 0.745 3.255 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.200 1.200 20 C -0.106 4.106 21 C -0.086 4.086 22 C -0.150 4.150 23 C -0.114 4.114 24 C -0.175 4.175 25 C 0.077 3.923 26 F -0.119 7.119 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.166 0.834 31 H 0.099 0.901 32 H 0.058 0.942 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.231 0.769 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.079 0.921 39 H 0.157 0.843 40 H 0.147 0.853 41 H 0.148 0.852 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.560 -2.137 30.747 31.511 hybrid contribution -1.519 3.043 -0.692 3.471 sum -8.079 0.906 30.054 31.134 Atomic orbital electron populations 1.22468 0.95561 1.02781 1.02937 1.20280 0.93069 0.97496 0.87568 0.89007 1.60386 1.57532 1.09776 1.03194 1.22135 1.00167 0.95824 0.89866 1.21128 1.02453 0.92551 0.84029 1.45892 1.69940 1.13897 1.09716 1.20292 0.75975 0.88801 0.83082 1.90707 1.46370 1.18264 1.83666 1.23532 1.05313 1.02370 0.99196 1.85399 1.84708 1.15289 0.97917 1.22829 1.51611 0.97405 0.96651 0.90972 1.24988 0.94525 0.96394 0.97648 1.70005 1.40920 1.20058 1.19285 0.86225 0.78620 0.81050 0.79604 1.19944 1.20799 1.19954 1.19826 1.02284 0.95484 0.93046 1.20953 0.95675 0.92950 0.99065 1.21288 1.00405 1.00639 0.92620 1.21025 0.98459 0.93673 0.98288 1.21101 1.02528 0.96134 0.97757 1.17544 1.00914 0.79376 0.94436 1.91486 1.87896 1.35547 1.96965 0.91804 0.91877 0.91595 0.83445 0.90140 0.94199 0.90620 0.91781 0.76894 0.89238 0.89181 0.92120 0.84280 0.85304 0.85212 0.84926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.14 9.14 37.16 0.34 -0.80 16 2 C 0.13 0.93 2.52 -68.86 -0.17 0.75 16 3 H 0.09 0.74 7.60 -51.93 -0.39 0.34 16 4 N -0.68 -5.03 5.09 -107.95 -0.55 -5.58 16 5 C 0.05 0.39 5.60 -3.82 -0.02 0.37 16 6 C 0.12 1.37 5.93 -4.04 -0.02 1.35 16 7 N -0.74 -9.57 5.56 -60.29 -0.33 -9.91 16 8 C 0.53 9.88 7.85 -10.98 -0.09 9.80 16 9 O -0.52 -11.75 15.86 5.56 0.09 -11.66 16 10 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 11 S -0.06 -1.62 20.57 -107.50 -2.21 -3.84 16 12 C -0.54 -15.30 9.50 30.94 0.29 -15.01 16 13 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 14 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 15 N -0.87 -26.18 13.22 55.49 0.73 -25.45 16 16 Si 0.92 21.39 29.55 -169.99 -5.02 16.37 16 17 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 20 C -0.10 -0.84 5.09 -104.56 -0.53 -1.37 16 21 C -0.07 -0.50 9.32 -39.60 -0.37 -0.87 16 22 C -0.13 -0.83 10.04 -39.58 -0.40 -1.23 16 23 C -0.10 -0.58 10.04 -39.59 -0.40 -0.98 16 24 C -0.16 -1.10 10.03 -39.51 -0.40 -1.50 16 25 C 0.10 0.82 7.24 -39.42 -0.29 0.54 16 26 F -0.14 -1.31 16.66 2.25 0.04 -1.27 16 27 H 0.06 0.39 7.45 -51.93 -0.39 0.00 16 28 H 0.06 0.38 8.13 -51.93 -0.42 -0.05 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.35 2.24 8.00 -39.29 -0.31 1.93 16 31 H 0.08 0.64 8.06 -51.93 -0.42 0.22 16 32 H 0.04 0.28 7.44 -51.93 -0.39 -0.10 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.40 3.92 8.47 -40.82 -0.35 3.58 16 36 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 37 H 0.09 1.67 8.14 -51.91 -0.42 1.24 16 38 H 0.27 7.55 8.31 -40.82 -0.34 7.22 16 39 H 0.14 0.90 6.84 -52.48 -0.36 0.55 16 40 H 0.13 0.58 8.06 -52.48 -0.42 0.15 16 41 H 0.13 0.49 8.06 -52.49 -0.42 0.06 16 42 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 LS Contribution 374.80 15.07 5.65 5.65 Total: -1.00 -34.62 374.80 -9.49 -44.11 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -5.95 Total: 1.38 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -1.92 Total: -9.80 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: -0.15 Total: -40.94 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.09 Total: -11.66 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.04 Total: -1.27 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.62 -9.49 -44.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123806283.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.182 kcal (2) G-P(sol) polarization free energy of solvation -34.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds