Wall clock time and date at job start Tue Mar 31 2020 16:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08991 * 109.47566 * 2 1 4 4 N 1.46903 * 109.46748 * 239.99482 * 2 1 3 5 5 C 1.46898 * 110.99673 * 85.00509 * 4 2 1 6 6 C 1.53006 * 109.47006 * 179.97438 * 5 4 2 7 7 N 1.46496 * 109.46995 * 179.97438 * 6 5 4 8 8 C 1.34775 * 119.99642 * 180.02562 * 7 6 5 9 9 O 1.21279 * 120.00300 * 359.97438 * 8 7 6 10 10 C 1.50703 * 119.99773 * 180.02562 * 8 7 6 11 11 S 1.81000 * 109.47292 * 179.97438 * 10 8 7 12 12 C 1.76195 * 100.00388 * 180.02562 * 11 10 8 13 13 H 1.08000 * 119.99781 * 0.02562 * 12 11 10 14 14 C 1.38796 * 119.99958 * 180.02562 * 12 11 10 15 15 N 1.31623 * 120.00359 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99868 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47069 * 59.99705 * 16 14 12 18 18 H 1.48500 * 109.47125 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46965 * 300.00065 * 16 14 12 20 20 C 1.50706 * 109.46748 * 120.00132 * 2 1 3 21 21 C 1.38213 * 120.01572 * 99.72868 * 20 2 1 22 22 C 1.38221 * 120.02579 * 179.71895 * 21 20 2 23 23 C 1.38268 * 120.05233 * 0.54800 * 22 21 20 24 24 C 1.38175 * 120.02484 * 359.72477 * 23 22 21 25 25 C 1.38436 * 120.01052 * 279.99233 * 20 2 1 26 26 F 1.35107 * 120.02639 * 0.03237 * 25 20 2 27 27 H 1.08996 * 109.46768 * 60.00165 * 1 2 3 28 28 H 1.08995 * 109.47200 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46732 * 300.00617 * 1 2 3 30 30 H 1.00895 * 111.00497 * 321.04431 * 4 2 1 31 31 H 1.09001 * 109.47062 * 59.99745 * 5 4 2 32 32 H 1.08993 * 109.47084 * 299.99192 * 5 4 2 33 33 H 1.09001 * 109.46801 * 300.00064 * 6 5 4 34 34 H 1.09001 * 109.46998 * 59.99660 * 6 5 4 35 35 H 0.96998 * 120.00192 * 359.97438 * 7 6 5 36 36 H 1.09001 * 109.47354 * 299.99360 * 10 8 7 37 37 H 1.09001 * 109.46980 * 59.99839 * 10 8 7 38 38 H 0.97001 * 119.99965 * 180.02562 * 15 14 12 39 39 H 1.08006 * 119.98780 * 359.97438 * 21 20 2 40 40 H 1.08005 * 119.97581 * 180.26933 * 22 21 20 41 41 H 1.07999 * 119.98807 * 179.74544 * 23 22 21 42 42 H 1.07995 * 120.01581 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 2.0825 0.2224 -2.3469 6 6 2.5962 -0.5331 -3.5742 7 7 2.6582 0.3793 -4.7186 8 6 3.0845 -0.0696 -5.9158 9 8 3.4170 -1.2286 -6.0456 10 6 3.1489 0.8692 -7.0930 11 16 3.7564 -0.0246 -8.5450 12 6 3.7326 1.2738 -9.7358 13 1 3.4047 2.2624 -9.4502 14 6 4.1353 1.0261 -11.0407 15 7 4.5355 -0.1787 -11.3886 16 14 4.1094 2.4025 -12.3034 17 1 5.0012 3.5022 -11.8553 18 1 4.5834 1.8833 -13.6115 19 1 2.7236 2.9164 -12.4470 20 6 2.0323 -0.7105 1.2305 21 6 2.4534 -2.0242 1.1469 22 6 2.9195 -2.6742 2.2741 23 6 2.9545 -2.0148 3.4889 24 6 2.5288 -0.7032 3.5762 25 6 2.0669 -0.0492 2.4462 26 9 1.6499 1.2332 2.5304 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8900 30 1 1.4496 -1.4980 -1.4100 31 1 2.7589 1.0460 -2.1182 32 1 1.0871 0.6161 -2.5525 33 1 3.5916 -0.9266 -3.3682 34 1 1.9200 -1.3570 -3.8029 35 1 2.3919 1.3062 -4.6149 36 1 2.1535 1.2629 -7.2987 37 1 3.8254 1.6927 -6.8644 38 1 4.8172 -0.3516 -12.3006 39 1 2.4221 -2.5419 0.1995 40 1 3.2525 -3.6995 2.2070 41 1 3.3151 -2.5250 4.3699 42 1 2.5566 -0.1881 4.5250 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123806283.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:53 Heat of formation + Delta-G solvation = -84.657362 kcal Electronic energy + Delta-G solvation = -23537.664844 eV Core-core repulsion = 19750.028657 eV Total energy + Delta-G solvation = -3787.636187 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.121 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.88262 -40.65896 -40.22039 -38.07308 -35.89656 -34.57897 -33.12313 -31.46684 -31.18928 -29.97754 -28.02717 -27.52958 -24.77068 -23.83159 -22.91822 -21.93441 -21.53601 -19.84667 -18.61284 -17.86275 -17.52288 -17.27906 -16.99754 -16.87269 -16.77209 -16.55348 -16.15465 -15.86776 -15.38637 -15.17617 -15.01839 -14.65831 -14.47180 -14.37038 -14.17415 -13.92590 -13.58747 -13.17357 -13.16439 -13.07882 -12.89462 -12.85184 -12.69418 -12.60593 -12.41655 -12.12601 -11.76070 -11.68776 -11.12369 -10.99224 -10.27407 -10.13441 -9.84169 -9.64508 -9.44648 -8.66217 -8.33834 -6.12126 0.23846 0.34414 1.26929 1.44456 1.47030 1.56713 1.61403 2.18214 2.28500 2.70060 3.00166 3.10395 3.34039 3.38819 3.65150 3.82280 3.93698 4.03405 4.06513 4.13127 4.19313 4.26224 4.31630 4.44129 4.47988 4.51873 4.52325 4.67752 4.75954 4.91517 4.96278 5.02920 5.14780 5.17462 5.26519 5.38809 5.42281 5.45878 5.54836 5.92270 6.02227 6.20254 6.31650 6.49882 7.07275 7.24372 8.75099 Molecular weight = 326.12amu Principal moments of inertia in cm(-1) A = 0.033557 B = 0.001678 C = 0.001633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.212735 B =16687.196317 C =17144.582681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.131 3.869 3 H 0.084 0.916 4 N -0.681 5.681 5 C 0.062 3.938 6 C 0.126 3.874 7 N -0.712 5.712 8 C 0.534 3.466 9 O -0.566 6.566 10 C -0.130 4.130 11 S -0.152 6.152 12 C -0.548 4.548 13 H 0.083 0.917 14 C 0.013 3.987 15 N -0.911 5.911 16 Si 0.998 3.002 17 H -0.262 1.262 18 H -0.279 1.279 19 H -0.262 1.262 20 C -0.115 4.115 21 C -0.079 4.079 22 C -0.134 4.134 23 C -0.097 4.097 24 C -0.163 4.163 25 C 0.073 3.927 26 F -0.150 7.150 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.352 0.648 31 H 0.084 0.916 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.417 0.583 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.271 0.729 39 H 0.144 0.856 40 H 0.148 0.852 41 H 0.155 0.845 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.596 1.308 32.163 33.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.021 3.979 3 H 0.102 0.898 4 N -0.313 5.313 5 C -0.067 4.067 6 C 0.002 3.998 7 N -0.367 5.367 8 C 0.320 3.680 9 O -0.444 6.444 10 C -0.281 4.281 11 S 0.075 5.925 12 C -0.696 4.696 13 H 0.102 0.898 14 C -0.192 4.192 15 N -0.547 5.547 16 Si 0.820 3.180 17 H -0.187 1.187 18 H -0.204 1.204 19 H -0.186 1.186 20 C -0.117 4.117 21 C -0.097 4.097 22 C -0.152 4.152 23 C -0.115 4.115 24 C -0.181 4.181 25 C 0.054 3.946 26 F -0.129 7.129 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.172 0.828 31 H 0.103 0.897 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.254 0.746 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.080 0.920 39 H 0.161 0.839 40 H 0.166 0.834 41 H 0.173 0.827 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -7.346 -0.594 32.003 32.840 hybrid contribution -1.300 2.537 -0.890 2.986 sum -8.645 1.943 31.113 32.350 Atomic orbital electron populations 1.22411 0.94796 1.03044 1.02915 1.20207 0.93587 0.96918 0.87237 0.89782 1.60332 1.58045 1.09948 1.03016 1.21980 1.00902 0.95357 0.88465 1.21189 1.01717 0.92577 0.84365 1.45601 1.67558 1.15148 1.08349 1.20049 0.76070 0.87749 0.84164 1.90697 1.49020 1.20110 1.84553 1.23374 1.06397 1.02004 0.96317 1.85583 1.85918 1.18599 1.02420 1.23181 1.51604 0.97645 0.97134 0.89848 1.26129 0.93756 0.99195 1.00072 1.70175 1.42056 1.22608 1.19892 0.85006 0.79283 0.77423 0.76287 1.18697 1.20413 1.18633 1.19942 1.02691 0.95915 0.93144 1.21109 0.96016 0.92849 0.99755 1.21598 0.99620 1.01545 0.92431 1.21353 0.97661 0.93302 0.99152 1.21367 1.02132 0.96704 0.97937 1.17814 1.02196 0.79300 0.95294 1.91453 1.88193 1.36228 1.97053 0.91238 0.91470 0.92134 0.82772 0.89728 0.92576 0.92225 0.92148 0.74607 0.87057 0.87163 0.91993 0.83859 0.83407 0.82718 0.83641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 9.14 71.98 0.66 -1.33 16 2 C 0.13 1.78 2.52 44.17 0.11 1.89 16 3 H 0.08 1.28 7.60 -2.39 -0.02 1.26 16 4 N -0.68 -9.16 5.09 -495.44 -2.52 -11.68 16 5 C 0.06 0.86 5.60 86.31 0.48 1.34 16 6 C 0.13 2.63 5.93 86.38 0.51 3.14 16 7 N -0.71 -17.05 5.56 -463.06 -2.57 -19.62 16 8 C 0.53 19.41 7.85 87.66 0.69 20.10 16 9 O -0.57 -26.17 15.86 -3.03 -0.05 -26.22 16 10 C -0.13 -5.06 6.16 71.24 0.44 -4.62 16 11 S -0.15 -8.46 20.57 -56.49 -1.16 -9.62 16 12 C -0.55 -31.23 9.50 67.95 0.65 -30.58 16 13 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 14 C 0.01 0.76 5.49 84.86 0.47 1.22 16 15 N -0.91 -56.01 13.22 21.65 0.29 -55.72 16 16 Si 1.00 43.45 29.55 68.60 2.03 45.48 16 17 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 18 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 19 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 20 C -0.12 -1.77 5.09 -19.82 -0.10 -1.87 16 21 C -0.08 -1.07 9.32 22.26 0.21 -0.86 16 22 C -0.13 -1.48 10.04 22.27 0.22 -1.26 16 23 C -0.10 -1.00 10.04 22.26 0.22 -0.77 16 24 C -0.16 -2.12 10.03 22.31 0.22 -1.90 16 25 C 0.07 1.21 7.24 22.38 0.16 1.37 16 26 F -0.15 -2.79 16.66 44.97 0.75 -2.04 16 27 H 0.07 0.71 7.45 -2.39 -0.02 0.69 16 28 H 0.07 0.71 8.13 -2.39 -0.02 0.69 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.35 4.06 8.00 -89.70 -0.72 3.35 16 31 H 0.08 1.14 8.06 -2.39 -0.02 1.12 16 32 H 0.06 0.63 7.44 -2.39 -0.02 0.61 16 33 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.42 6.93 8.47 -92.71 -0.79 6.14 16 36 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 37 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 38 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 39 H 0.14 1.72 6.84 -2.91 -0.02 1.70 16 40 H 0.15 1.00 8.06 -2.91 -0.02 0.98 16 41 H 0.16 0.75 8.06 -2.91 -0.02 0.72 16 42 H 0.15 1.40 8.06 -2.91 -0.02 1.37 16 Total: -1.00 -77.17 374.80 1.24 -75.93 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -0.46 Total: 17.62 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: 4.94 Total: -14.13 kcal Atomic # 7 Polarization: -82.21 SS G_CDS: -4.81 Total: -87.02 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -0.05 Total: -26.22 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.75 Total: -2.04 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 16 Polarization: -8.46 SS G_CDS: -1.16 Total: -9.62 kcal Total: -77.17 1.24 -75.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123806283.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.726 kcal (2) G-P(sol) polarization free energy of solvation -77.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds