Wall clock time and date at job start Tue Mar 31 2020 14:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47306 * 2 1 4 4 N 1.46500 * 109.47525 * 180.02562 * 3 2 1 5 5 C 1.34773 * 120.00429 * 180.02562 * 4 3 2 6 6 O 1.21483 * 119.99964 * 359.97438 * 5 4 3 7 7 C 1.48463 * 120.00258 * 179.72030 * 5 4 3 8 8 C 1.39414 * 120.49775 * 180.27451 * 7 5 4 9 9 C 1.38991 * 118.40809 * 180.02562 * 8 7 5 10 10 Cl 1.73598 * 120.39104 * 180.02562 * 9 8 7 11 11 N 1.32241 * 119.21437 * 359.97438 * 9 8 7 12 12 C 1.32559 * 120.94040 * 0.02562 * 11 9 8 13 13 N 1.38424 * 119.13597 * 180.02562 * 12 11 9 14 14 C 1.46505 * 119.99636 * 0.02562 * 13 12 11 15 15 H 1.09000 * 109.47061 * 34.99792 * 14 13 12 16 16 C 1.50698 * 109.47004 * 154.99633 * 14 13 12 17 17 H 1.07997 * 120.00070 * 359.97438 * 16 14 13 18 18 C 1.37882 * 120.00045 * 179.97438 * 16 14 13 19 19 N 1.31512 * 119.99774 * 0.02562 * 18 16 14 20 20 Si 1.86794 * 120.00082 * 179.97438 * 18 16 14 21 21 H 1.48507 * 109.46997 * 90.00339 * 20 18 16 22 22 H 1.48502 * 109.47104 * 210.00044 * 20 18 16 23 23 H 1.48495 * 109.47233 * 330.00018 * 20 18 16 24 24 C 1.53000 * 109.46954 * 274.99685 * 14 13 12 25 25 C 1.53001 * 109.47208 * 64.99892 * 24 14 13 26 26 N 1.32298 * 121.73506 * 359.71723 * 12 11 9 27 27 H 1.09007 * 109.47220 * 59.99607 * 1 2 3 28 28 H 1.08994 * 109.47484 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46924 * 300.00487 * 1 2 3 30 30 H 1.09003 * 109.47062 * 240.00453 * 2 1 3 31 31 H 1.08993 * 109.47193 * 120.00262 * 2 1 3 32 32 H 1.09000 * 109.47527 * 59.99882 * 3 2 1 33 33 H 1.09007 * 109.47302 * 300.00342 * 3 2 1 34 34 H 0.97000 * 119.99459 * 359.97438 * 4 3 2 35 35 H 1.08002 * 120.79610 * 359.97438 * 8 7 5 36 36 H 0.96995 * 120.00618 * 179.97438 * 13 12 11 37 37 H 0.96997 * 119.99981 * 180.02562 * 19 18 16 38 38 H 1.08995 * 109.47129 * 185.00112 * 24 14 13 39 39 H 1.09002 * 109.47112 * 304.99710 * 24 14 13 40 40 H 1.08998 * 109.46791 * 180.02562 * 25 24 14 41 41 H 1.08995 * 109.47254 * 300.00143 * 25 24 14 42 42 H 1.08998 * 109.46808 * 60.00129 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1789 2.6097 -0.0002 6 8 3.5715 3.6618 0.0002 7 6 5.6635 2.6097 0.0054 8 6 6.3710 3.8110 0.0117 9 6 7.7600 3.7603 0.0163 10 17 8.6922 5.2247 0.0248 11 7 8.3630 2.5833 0.0151 12 6 7.6618 1.4584 0.0091 13 7 8.3314 0.2469 0.0087 14 6 9.7962 0.2196 0.0153 15 1 10.1724 1.0528 0.6089 16 6 10.2717 -1.0789 0.6142 17 1 9.5546 -1.8105 0.9562 18 6 11.6223 -1.3330 0.7257 19 7 12.4956 -0.4419 0.3098 20 14 12.2118 -2.9423 1.4688 21 1 12.3621 -3.9574 0.3953 22 1 13.5215 -2.7293 2.1355 23 1 11.2204 -3.4194 2.4661 24 6 10.3150 0.3399 -1.4190 25 6 9.9382 1.7108 -1.9844 26 7 6.3389 1.4629 0.0097 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 1.6767 1.9564 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 3.9900 0.6025 -0.0006 35 1 5.8523 4.7582 0.0121 36 1 7.8310 -0.5840 0.0047 37 1 13.4457 -0.6208 0.3878 38 1 11.3994 0.2306 -1.4235 39 1 9.8685 -0.4418 -2.0336 40 1 10.3074 1.7963 -3.0063 41 1 8.8538 1.8201 -1.9799 42 1 10.3847 2.4924 -1.3697 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161055782.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:30 Heat of formation + Delta-G solvation = 5.026559 kcal Electronic energy + Delta-G solvation = -25225.433456 eV Core-core repulsion = 21459.562511 eV Total energy + Delta-G solvation = -3765.870945 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.125 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.99955 -39.46149 -36.85170 -36.31282 -35.98685 -33.64114 -33.10266 -32.55957 -31.35350 -29.95260 -27.15081 -26.84850 -24.82761 -23.45858 -22.81141 -21.90049 -20.98572 -19.80766 -18.36485 -18.02818 -16.68408 -16.09476 -16.00666 -15.83608 -15.38762 -15.32316 -14.93097 -14.51564 -14.44314 -14.08215 -13.82382 -13.20120 -12.95847 -12.77391 -12.72172 -12.37725 -12.18965 -11.75415 -11.47669 -11.36182 -11.31261 -11.20992 -11.09507 -10.96497 -10.75434 -10.54124 -10.36676 -10.32919 -10.25551 -9.73077 -9.67322 -9.26328 -9.17229 -8.95240 -8.54905 -7.44598 -6.22095 -4.31881 0.71421 1.25886 1.74908 2.81147 2.91000 3.19179 3.26032 3.27719 3.43701 4.08371 4.21763 4.27475 4.52339 4.65903 4.85257 4.94111 4.94785 5.10167 5.27204 5.31991 5.37848 5.46807 5.53403 5.67771 5.79592 5.87971 6.12845 6.21882 6.26878 6.31437 6.53017 6.85761 6.89680 7.04972 7.22592 7.31165 7.41456 7.50849 7.57352 7.78069 7.98347 8.05287 8.27925 8.55828 8.82184 9.34872 10.83157 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.010411 B = 0.003629 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2688.944075 B = 7713.643330 C = 9919.579711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.138 4.138 3 C 0.117 3.883 4 N -0.710 5.710 5 C 0.579 3.421 6 O -0.527 6.527 7 C 0.184 3.816 8 C -0.244 4.244 9 C 0.269 3.731 10 Cl -0.018 7.018 11 N -0.527 5.527 12 C 0.588 3.412 13 N -0.658 5.658 14 C 0.278 3.722 15 H 0.058 0.942 16 C -0.538 4.538 17 H 0.062 0.938 18 C 0.070 3.930 19 N -0.880 5.880 20 Si 0.903 3.097 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.273 1.273 24 C -0.128 4.128 25 C -0.133 4.133 26 N -0.563 5.563 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.414 0.586 35 H 0.157 0.843 36 H 0.407 0.593 37 H 0.266 0.734 38 H 0.103 0.897 39 H 0.032 0.968 40 H 0.024 0.976 41 H 0.026 0.974 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.438 3.840 -1.593 16.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.176 4.176 3 C -0.007 4.007 4 N -0.362 5.362 5 C 0.362 3.638 6 O -0.402 6.402 7 C 0.033 3.967 8 C -0.275 4.275 9 C 0.090 3.910 10 Cl 0.010 6.990 11 N -0.253 5.253 12 C 0.231 3.769 13 N -0.287 5.287 14 C 0.176 3.824 15 H 0.076 0.924 16 C -0.577 4.577 17 H 0.081 0.919 18 C -0.134 4.134 19 N -0.517 5.517 20 Si 0.730 3.270 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.198 1.198 24 C -0.167 4.167 25 C -0.191 4.191 26 N -0.292 5.292 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.251 0.749 35 H 0.174 0.826 36 H 0.244 0.756 37 H 0.076 0.924 38 H 0.121 0.879 39 H 0.050 0.950 40 H 0.044 0.956 41 H 0.045 0.955 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.866 3.754 -1.589 16.382 hybrid contribution 0.243 -0.648 0.309 0.758 sum -15.623 3.106 -1.280 15.980 Atomic orbital electron populations 1.21673 0.94509 1.02202 1.02271 1.21750 0.96912 0.95698 1.03213 1.21482 0.79030 0.97502 1.02640 1.45847 1.07352 1.09198 1.73839 1.17780 0.85307 0.84023 0.76645 1.90778 1.68579 1.31310 1.49494 1.20940 0.93775 0.88524 0.93458 1.21956 0.92606 1.00678 1.12214 1.21584 0.88251 0.88731 0.92475 1.98415 1.74531 1.30064 1.95961 1.67430 1.40610 0.96789 1.20492 1.19151 0.83448 0.87001 0.87294 1.45396 1.09393 1.01707 1.72231 1.19001 0.71030 0.98514 0.93828 0.92402 1.21177 0.92223 1.02330 1.41920 0.91948 1.24848 0.96383 0.97167 0.95035 1.69877 1.02030 1.34179 1.45587 0.86426 0.78264 0.83024 0.79290 1.20478 1.21006 1.19825 1.21965 1.04620 0.93476 0.96606 1.21830 0.98910 0.99890 0.98450 1.67826 1.08380 1.29473 1.23518 0.92366 0.92129 0.92351 0.91029 0.91008 0.91186 0.91201 0.74898 0.82566 0.75611 0.92407 0.87877 0.94965 0.95646 0.95473 0.92410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.91 37.16 0.37 -0.48 16 2 C -0.14 -0.93 6.05 -26.73 -0.16 -1.09 16 3 C 0.12 1.05 5.67 -4.04 -0.02 1.03 16 4 N -0.71 -8.03 5.55 -61.05 -0.34 -8.37 16 5 C 0.58 8.30 7.83 -12.05 -0.09 8.20 16 6 O -0.53 -8.54 16.42 5.38 0.09 -8.46 16 7 C 0.18 2.88 6.79 -82.67 -0.56 2.32 16 8 C -0.24 -3.78 9.52 -38.86 -0.37 -4.15 16 9 C 0.27 4.53 7.34 -17.10 -0.13 4.41 16 10 Cl -0.02 -0.27 29.15 -51.86 -1.51 -1.78 16 11 N -0.53 -10.19 6.33 -11.03 -0.07 -10.26 16 12 C 0.59 11.18 6.99 -322.95 -2.26 8.92 16 13 N -0.66 -13.12 5.16 -56.95 -0.29 -13.42 16 14 C 0.28 6.50 2.24 -69.08 -0.15 6.34 16 15 H 0.06 1.54 7.50 -51.93 -0.39 1.15 16 16 C -0.54 -13.51 8.73 -34.44 -0.30 -13.81 16 17 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 18 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 19 N -0.88 -23.48 11.29 55.43 0.63 -22.86 16 20 Si 0.90 19.94 29.54 -169.99 -5.02 14.91 16 21 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 24 C -0.13 -2.91 5.45 -26.73 -0.15 -3.06 16 25 C -0.13 -2.75 8.43 37.16 0.31 -2.44 16 26 N -0.56 -9.37 9.72 -10.51 -0.10 -9.47 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.41 4.37 7.86 -40.82 -0.32 4.05 16 35 H 0.16 2.16 7.73 -52.49 -0.41 1.76 16 36 H 0.41 7.43 8.65 -40.82 -0.35 7.08 16 37 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 38 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 39 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.03 0.55 5.60 -51.93 -0.29 0.25 16 42 H 0.06 1.24 7.64 -51.93 -0.40 0.84 16 LS Contribution 364.96 15.07 5.50 5.50 Total: -1.00 -27.41 364.96 -10.54 -37.95 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -5.81 Total: 8.37 kcal Atomic # 6 Polarization: 11.49 SS G_CDS: -3.61 Total: 7.88 kcal Atomic # 7 Polarization: -64.20 SS G_CDS: -0.18 Total: -64.37 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: 0.09 Total: -8.46 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.91 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -1.51 Total: -1.78 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -27.41 -10.54 -37.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161055782.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.974 kcal (2) G-P(sol) polarization free energy of solvation -27.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds