Wall clock time and date at job start Tue Mar 31 2020 14:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47306 * 2 1 4 4 N 1.46500 * 109.47525 * 180.02562 * 3 2 1 5 5 C 1.34773 * 120.00429 * 180.02562 * 4 3 2 6 6 O 1.21483 * 119.99964 * 359.97438 * 5 4 3 7 7 C 1.48463 * 120.00258 * 179.72030 * 5 4 3 8 8 C 1.39414 * 120.49775 * 180.27451 * 7 5 4 9 9 C 1.38991 * 118.40809 * 180.02562 * 8 7 5 10 10 Cl 1.73598 * 120.39104 * 180.02562 * 9 8 7 11 11 N 1.32241 * 119.21437 * 359.97438 * 9 8 7 12 12 C 1.32559 * 120.94040 * 0.02562 * 11 9 8 13 13 N 1.38424 * 119.13597 * 180.02562 * 12 11 9 14 14 C 1.46505 * 119.99636 * 0.02562 * 13 12 11 15 15 H 1.09000 * 109.47061 * 34.99792 * 14 13 12 16 16 C 1.50698 * 109.47004 * 154.99633 * 14 13 12 17 17 H 1.07997 * 120.00070 * 359.97438 * 16 14 13 18 18 C 1.37882 * 120.00045 * 179.97438 * 16 14 13 19 19 N 1.31512 * 119.99774 * 0.02562 * 18 16 14 20 20 Si 1.86794 * 120.00082 * 179.97438 * 18 16 14 21 21 H 1.48507 * 109.46997 * 90.00339 * 20 18 16 22 22 H 1.48502 * 109.47104 * 210.00044 * 20 18 16 23 23 H 1.48495 * 109.47233 * 330.00018 * 20 18 16 24 24 C 1.53000 * 109.46954 * 274.99685 * 14 13 12 25 25 C 1.53001 * 109.47208 * 64.99892 * 24 14 13 26 26 N 1.32298 * 121.73506 * 359.71723 * 12 11 9 27 27 H 1.09007 * 109.47220 * 59.99607 * 1 2 3 28 28 H 1.08994 * 109.47484 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46924 * 300.00487 * 1 2 3 30 30 H 1.09003 * 109.47062 * 240.00453 * 2 1 3 31 31 H 1.08993 * 109.47193 * 120.00262 * 2 1 3 32 32 H 1.09000 * 109.47527 * 59.99882 * 3 2 1 33 33 H 1.09007 * 109.47302 * 300.00342 * 3 2 1 34 34 H 0.97000 * 119.99459 * 359.97438 * 4 3 2 35 35 H 1.08002 * 120.79610 * 359.97438 * 8 7 5 36 36 H 0.96995 * 120.00618 * 179.97438 * 13 12 11 37 37 H 0.96997 * 119.99981 * 180.02562 * 19 18 16 38 38 H 1.08995 * 109.47129 * 185.00112 * 24 14 13 39 39 H 1.09002 * 109.47112 * 304.99710 * 24 14 13 40 40 H 1.08998 * 109.46791 * 180.02562 * 25 24 14 41 41 H 1.08995 * 109.47254 * 300.00143 * 25 24 14 42 42 H 1.08998 * 109.46808 * 60.00129 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1789 2.6097 -0.0002 6 8 3.5715 3.6618 0.0002 7 6 5.6635 2.6097 0.0054 8 6 6.3710 3.8110 0.0117 9 6 7.7600 3.7603 0.0163 10 17 8.6922 5.2247 0.0248 11 7 8.3630 2.5833 0.0151 12 6 7.6618 1.4584 0.0091 13 7 8.3314 0.2469 0.0087 14 6 9.7962 0.2196 0.0153 15 1 10.1724 1.0528 0.6089 16 6 10.2717 -1.0789 0.6142 17 1 9.5546 -1.8105 0.9562 18 6 11.6223 -1.3330 0.7257 19 7 12.4956 -0.4419 0.3098 20 14 12.2118 -2.9423 1.4688 21 1 12.3621 -3.9574 0.3953 22 1 13.5215 -2.7293 2.1355 23 1 11.2204 -3.4194 2.4661 24 6 10.3150 0.3399 -1.4190 25 6 9.9382 1.7108 -1.9844 26 7 6.3389 1.4629 0.0097 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 1.6767 1.9564 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 3.9900 0.6025 -0.0006 35 1 5.8523 4.7582 0.0121 36 1 7.8310 -0.5840 0.0047 37 1 13.4457 -0.6208 0.3878 38 1 11.3994 0.2306 -1.4235 39 1 9.8685 -0.4418 -2.0336 40 1 10.3074 1.7963 -3.0063 41 1 8.8538 1.8201 -1.9799 42 1 10.3847 2.4924 -1.3697 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161055782.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:29 Heat of formation + Delta-G solvation = -9.938957 kcal Electronic energy + Delta-G solvation = -25226.082410 eV Core-core repulsion = 21459.562511 eV Total energy + Delta-G solvation = -3766.519898 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.125 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.34033 -40.62103 -38.27552 -37.76001 -36.87839 -34.94780 -34.81320 -33.44048 -33.04462 -31.46700 -28.68547 -28.01917 -25.93249 -25.14702 -24.29782 -22.57769 -22.31632 -21.36579 -19.79964 -19.33565 -18.28954 -17.34745 -17.10414 -17.06438 -16.72178 -16.60750 -16.51847 -15.84082 -15.60286 -15.40721 -15.10762 -14.60397 -14.43397 -13.83111 -13.66236 -13.54171 -13.35273 -13.17031 -12.95219 -12.88701 -12.69495 -12.54005 -12.24880 -12.09136 -12.03260 -11.99476 -11.82617 -11.73665 -11.60065 -11.47657 -11.18714 -10.93094 -10.51577 -10.33338 -10.21575 -8.97438 -8.15971 -6.31893 -0.58119 -0.09732 0.46717 1.45307 1.46528 1.55731 1.60487 1.81583 2.00627 2.43994 2.72496 3.01477 3.14524 3.54079 3.61167 3.90701 4.09185 4.13908 4.21669 4.37440 4.53787 4.56361 4.69060 4.71050 4.74066 4.85755 4.87905 5.08732 5.18758 5.22143 5.26187 5.26395 5.42365 5.44541 5.51446 5.60083 5.74627 5.82932 5.98814 6.20155 6.30542 6.64388 6.73209 6.93809 7.22804 7.40755 8.88857 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.010411 B = 0.003629 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2688.944075 B = 7713.643330 C = 9919.579711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.131 4.131 3 C 0.114 3.886 4 N -0.696 5.696 5 C 0.579 3.421 6 O -0.547 6.547 7 C 0.179 3.821 8 C -0.232 4.232 9 C 0.259 3.741 10 Cl -0.002 7.002 11 N -0.555 5.555 12 C 0.578 3.422 13 N -0.663 5.663 14 C 0.292 3.708 15 H 0.021 0.979 16 C -0.551 4.551 17 H 0.067 0.933 18 C 0.023 3.977 19 N -0.909 5.909 20 Si 0.965 3.035 21 H -0.273 1.273 22 H -0.286 1.286 23 H -0.268 1.268 24 C -0.120 4.120 25 C -0.117 4.117 26 N -0.551 5.551 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.419 0.581 35 H 0.175 0.825 36 H 0.414 0.586 37 H 0.265 0.735 38 H 0.076 0.924 39 H 0.033 0.967 40 H 0.039 0.961 41 H 0.029 0.971 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.146 3.298 -1.634 18.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.169 4.169 3 C -0.009 4.009 4 N -0.347 5.347 5 C 0.362 3.638 6 O -0.424 6.424 7 C 0.029 3.971 8 C -0.261 4.261 9 C 0.082 3.918 10 Cl 0.027 6.973 11 N -0.282 5.282 12 C 0.221 3.779 13 N -0.295 5.295 14 C 0.189 3.811 15 H 0.039 0.961 16 C -0.589 4.589 17 H 0.085 0.915 18 C -0.178 4.178 19 N -0.546 5.546 20 Si 0.790 3.210 21 H -0.199 1.199 22 H -0.212 1.212 23 H -0.192 1.192 24 C -0.160 4.160 25 C -0.174 4.174 26 N -0.279 5.279 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.257 0.743 35 H 0.193 0.807 36 H 0.252 0.748 37 H 0.075 0.925 38 H 0.094 0.906 39 H 0.052 0.948 40 H 0.058 0.942 41 H 0.048 0.952 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -17.631 3.220 -1.633 17.997 hybrid contribution 0.668 -0.371 0.332 0.833 sum -16.963 2.849 -1.301 17.250 Atomic orbital electron populations 1.21675 0.93546 1.02837 1.02502 1.21719 0.97619 0.93985 1.03573 1.21678 0.77370 0.99202 1.02602 1.45898 1.08421 1.08457 1.71967 1.17601 0.84569 0.84582 0.77012 1.90774 1.68561 1.32096 1.50998 1.21316 0.94724 0.88295 0.92801 1.22193 0.92075 1.01519 1.10311 1.21839 0.89014 0.88670 0.92325 1.98418 1.74320 1.28741 1.95822 1.67401 1.41666 0.97630 1.21488 1.19170 0.84158 0.86645 0.87926 1.44979 1.08082 1.02544 1.73935 1.18518 0.72925 0.96373 0.93253 0.96089 1.21522 0.92583 1.03028 1.41776 0.91488 1.25619 0.96630 1.00076 0.95465 1.70010 1.02145 1.35846 1.46642 0.85457 0.77515 0.79436 0.78596 1.19878 1.21228 1.19243 1.21802 1.02764 0.94745 0.96644 1.21640 0.98930 0.98069 0.98789 1.67826 1.07232 1.29868 1.22937 0.92144 0.91296 0.92179 0.90632 0.90696 0.91242 0.91185 0.74337 0.80732 0.74794 0.92525 0.90588 0.94848 0.94159 0.95155 0.93653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 71.98 0.71 -0.64 16 2 C -0.13 -1.48 6.05 30.59 0.19 -1.30 16 3 C 0.11 1.84 5.67 86.38 0.49 2.33 16 4 N -0.70 -14.49 5.55 -465.37 -2.58 -17.07 16 5 C 0.58 15.67 7.83 86.97 0.68 16.35 16 6 O -0.55 -16.88 16.42 -3.66 -0.06 -16.94 16 7 C 0.18 5.37 6.79 41.97 0.28 5.66 16 8 C -0.23 -6.85 9.52 22.73 0.22 -6.63 16 9 C 0.26 8.54 7.34 84.81 0.62 9.17 16 10 Cl 0.00 -0.05 29.15 -2.72 -0.08 -0.12 16 11 N -0.56 -21.43 6.33 -188.82 -1.20 -22.63 16 12 C 0.58 21.79 6.99 261.54 1.83 23.62 16 13 N -0.66 -26.53 5.16 -334.09 -1.72 -28.25 16 14 C 0.29 13.93 2.24 44.24 0.10 14.03 16 15 H 0.02 1.16 7.50 -2.39 -0.02 1.15 16 16 C -0.55 -27.87 8.73 25.60 0.22 -27.64 16 17 H 0.07 3.24 7.74 -2.91 -0.02 3.22 16 18 C 0.02 1.19 5.29 84.66 0.45 1.63 16 19 N -0.91 -49.44 11.29 21.45 0.24 -49.20 16 20 Si 0.96 40.86 29.54 68.60 2.03 42.89 16 21 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 22 H -0.29 -12.14 7.11 99.48 0.71 -11.43 16 23 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 24 C -0.12 -5.57 5.45 30.59 0.17 -5.40 16 25 C -0.12 -4.82 8.43 71.98 0.61 -4.21 16 26 N -0.55 -17.74 9.72 -187.15 -1.82 -19.56 16 27 H 0.06 0.53 8.14 -2.38 -0.02 0.52 16 28 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 34 H 0.42 8.04 7.86 -92.71 -0.73 7.31 16 35 H 0.18 4.49 7.73 -2.91 -0.02 4.47 16 36 H 0.41 15.01 8.65 -92.71 -0.80 14.20 16 37 H 0.27 13.78 8.31 -92.71 -0.77 13.01 16 38 H 0.08 3.96 5.95 -2.39 -0.01 3.95 16 39 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.03 1.21 5.60 -2.39 -0.01 1.19 16 42 H 0.04 1.96 7.64 -2.39 -0.02 1.94 16 Total: -1.00 -58.31 364.96 0.91 -57.39 By element: Atomic # 1 Polarization: 27.02 SS G_CDS: -0.46 Total: 26.55 kcal Atomic # 6 Polarization: 20.38 SS G_CDS: 6.57 Total: 26.94 kcal Atomic # 7 Polarization: -129.63 SS G_CDS: -7.08 Total: -136.71 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -0.06 Total: -16.94 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 2.03 Total: 42.89 kcal Atomic # 17 Polarization: -0.05 SS G_CDS: -0.08 Total: -0.12 kcal Total: -58.31 0.91 -57.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161055782.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.455 kcal (2) G-P(sol) polarization free energy of solvation -58.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds