Wall clock time and date at job start Tue Mar 31 2020 16:39:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09005 * 109.47005 * 2 1
4 4 N 1.46491 * 109.47232 * 120.00284 * 2 1 3
5 5 C 1.39412 * 120.00050 * 275.00183 * 4 2 1
6 6 C 1.38731 * 120.22704 * 5.35748 * 5 4 2
7 7 C 1.38449 * 120.15405 * 179.97438 * 6 5 4
8 8 C 1.37987 * 120.70471 * 0.02562 * 7 6 5
9 9 C 1.39158 * 120.13850 * 0.02562 * 8 7 6
10 10 N 1.38136 * 132.75539 * 180.02562 * 9 8 7
11 11 H 0.96998 * 124.69639 * 359.97438 * 10 9 8
12 12 C 1.35656 * 110.61002 * 180.02562 * 10 9 8
13 13 C 1.38960 * 109.24584 * 359.97438 * 12 10 9
14 14 C 1.40914 * 126.93395 * 179.97438 * 13 12 10
15 15 H 1.07999 * 119.99671 * 158.40323 * 14 13 12
16 16 C 1.39671 * 120.00158 * 338.40351 * 14 13 12
17 17 N 1.31084 * 119.99729 * 359.97438 * 16 14 13
18 18 Si 1.86793 * 120.00318 * 180.02562 * 16 14 13
19 19 H 1.48502 * 109.47215 * 59.99389 * 18 16 14
20 20 H 1.48497 * 109.47439 * 180.02562 * 18 16 14
21 21 H 1.48499 * 109.47007 * 300.00067 * 18 16 14
22 22 C 1.39772 * 120.22762 * 185.37658 * 5 4 2
23 23 C 1.50700 * 109.47280 * 240.00449 * 2 1 3
24 24 N 1.31777 * 119.09156 * 284.73200 * 23 2 1
25 25 C 1.32323 * 120.84761 * 179.71900 * 24 23 2
26 26 C 1.38818 * 119.07023 * 0.53636 * 25 24 23
27 27 F 1.35092 * 120.82562 * 179.75402 * 26 25 24
28 28 C 1.38825 * 118.34442 * 359.73949 * 26 25 24
29 29 N 1.31790 * 119.09194 * 104.99569 * 23 2 1
30 30 H 1.09002 * 109.47453 * 59.99679 * 1 2 3
31 31 H 1.09001 * 109.47186 * 179.97438 * 1 2 3
32 32 H 1.09000 * 109.47246 * 299.99678 * 1 2 3
33 33 H 0.96996 * 120.00187 * 95.00119 * 4 2 1
34 34 H 1.08004 * 119.92073 * 0.02562 * 6 5 4
35 35 H 1.07996 * 119.65126 * 180.29191 * 7 6 5
36 36 H 1.08005 * 119.93377 * 179.97438 * 8 7 6
37 37 H 1.08004 * 125.38184 * 179.97438 * 12 10 9
38 38 H 0.97001 * 120.00329 * 179.97438 * 17 16 14
39 39 H 1.08000 * 120.46460 * 180.27900 * 25 24 23
40 40 H 1.08003 * 120.46015 * 180.02562 * 28 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0183 -0.6906 1.1961
5 6 2.1515 0.0048 2.3970
6 6 1.7195 1.3195 2.4944
7 6 1.8519 2.0085 3.6879
8 6 2.4130 1.4020 4.7930
9 6 2.8543 0.0844 4.7183
10 7 3.4415 -0.7616 5.6390
11 1 3.6455 -0.5228 6.5567
12 6 3.6944 -1.9723 5.0817
13 6 3.2755 -1.9632 3.7568
14 6 3.3616 -3.0248 2.8341
15 1 2.7154 -3.0420 1.9689
16 6 4.2826 -4.0547 3.0385
17 7 5.0673 -4.0334 4.0884
18 14 4.3974 -5.4616 1.8151
19 1 4.7499 -4.9255 0.4759
20 1 5.4438 -6.4180 2.2573
21 1 3.0891 -6.1600 1.7399
22 6 2.7215 -0.6177 3.5111
23 6 2.0324 -0.7103 -1.2305
24 7 1.9699 -2.0256 -1.2814
25 6 2.3960 -2.6844 -2.3470
26 6 2.9239 -1.9710 -3.4145
27 9 3.3739 -2.6078 -4.5177
28 6 2.9777 -0.5870 -3.3202
29 7 2.5269 0.0008 -2.2238
30 1 -0.3634 0.5139 -0.8900
31 1 -0.3633 -1.0277 -0.0005
32 1 -0.3634 0.5138 0.8900
33 1 2.2491 -1.6317 1.1525
34 1 1.2780 1.8064 1.6373
35 1 1.5085 3.0302 3.7560
36 1 2.5107 1.9513 5.7178
37 1 4.1495 -2.8109 5.5877
38 1 5.7067 -4.7488 4.2306
39 1 2.3377 -3.7621 -2.3840
40 1 3.3813 0.0017 -4.1307
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001171118676.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 16:39:12
Heat of formation + Delta-G solvation = 63.705725 kcal
Electronic energy + Delta-G solvation = -26938.827465 eV
Core-core repulsion = 23054.473584 eV
Total energy + Delta-G solvation = -3884.353881 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 326.124 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-49.28211 -41.25177 -39.64918 -37.08398 -34.92125 -34.06741 -33.43154 -32.03665
-30.32631 -28.95081 -27.90308 -27.09350 -25.21790 -24.89468 -24.34863 -22.16853
-20.97117 -20.23961 -19.40986 -18.53468 -17.84760 -17.54096 -16.79984 -16.28394
-15.76696 -15.36367 -15.15860 -14.84029 -14.51705 -14.46514 -14.29214 -13.69398
-13.41308 -13.35186 -13.06783 -12.82953 -12.52393 -12.41924 -12.24331 -11.66716
-11.40170 -11.31309 -11.16214 -11.15875 -11.09538 -10.75360 -10.67985 -10.44834
-9.78671 -9.73417 -9.47215 -9.43044 -9.31090 -9.02730 -7.41756 -6.95738
-6.45435 -6.02155 -3.95822 0.45919 0.72979 2.49063 2.78454 3.11631
3.16163 3.18920 3.34909 3.54710 3.59879 3.77846 4.10174 4.28267
4.34243 4.40833 4.45865 4.66435 4.94726 5.03455 5.30296 5.38942
5.45828 5.60681 5.76874 5.84609 5.99269 6.07047 6.08878 6.19991
6.37423 6.52158 6.64106 6.68033 6.88677 7.14782 7.21151 7.30043
7.53783 7.55646 7.78593 7.86209 7.95786 8.24781 8.43740 8.64124
8.76768 9.07476 9.17921 9.27362 10.56563
Molecular weight = 326.12amu
Principal moments of inertia in cm(-1)
A = 0.009633 B = 0.005370 C = 0.003632
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2905.862190 B = 5213.023590 C = 7707.673994
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C 0.222 3.778
3 H 0.104 0.896
4 N -0.733 5.733
5 C 0.277 3.723
6 C -0.276 4.276
7 C -0.068 4.068
8 C -0.206 4.206
9 C 0.119 3.881
10 N -0.588 5.588
11 H 0.393 0.607
12 C -0.089 4.089
13 C 0.036 3.964
14 C -0.429 4.429
15 H 0.067 0.933
16 C 0.063 3.937
17 N -0.834 5.834
18 Si 0.906 3.094
19 H -0.272 1.272
20 H -0.283 1.283
21 H -0.268 1.268
22 C -0.183 4.183
23 C 0.314 3.686
24 N -0.475 5.475
25 C 0.133 3.867
26 C -0.014 4.014
27 F -0.121 7.121
28 C 0.128 3.872
29 N -0.485 5.485
30 H 0.058 0.942
31 H 0.065 0.935
32 H 0.078 0.922
33 H 0.415 0.585
34 H 0.105 0.895
35 H 0.104 0.896
36 H 0.096 0.904
37 H 0.172 0.828
38 H 0.271 0.729
39 H 0.181 0.819
40 H 0.181 0.819
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.057 5.184 -10.608 12.844
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.222 4.222
2 C 0.113 3.887
3 H 0.122 0.878
4 N -0.368 5.368
5 C 0.173 3.827
6 C -0.301 4.301
7 C -0.088 4.088
8 C -0.229 4.229
9 C 0.006 3.994
10 N -0.188 5.188
11 H 0.226 0.774
12 C -0.213 4.213
13 C 0.031 3.969
14 C -0.463 4.463
15 H 0.085 0.915
16 C -0.147 4.147
17 N -0.465 5.465
18 Si 0.732 3.268
19 H -0.198 1.198
20 H -0.208 1.208
21 H -0.193 1.193
22 C -0.193 4.193
23 C 0.046 3.954
24 N -0.187 5.187
25 C -0.035 4.035
26 C -0.038 4.038
27 F -0.100 7.100
28 C -0.041 4.041
29 N -0.198 5.198
30 H 0.077 0.923
31 H 0.084 0.916
32 H 0.097 0.903
33 H 0.257 0.743
34 H 0.123 0.877
35 H 0.122 0.878
36 H 0.114 0.886
37 H 0.189 0.811
38 H 0.082 0.918
39 H 0.198 0.802
40 H 0.198 0.802
Dipole moment (debyes) X Y Z Total
from point charges -5.175 5.482 -9.762 12.334
hybrid contribution 0.938 -1.594 -1.260 2.238
sum -4.237 3.888 -11.022 12.432
Atomic orbital electron populations
1.22289 0.94068 1.03224 1.02582 1.19377 0.94039 0.95659 0.79590
0.87814 1.44808 1.72996 1.13530 1.05496 1.17139 0.91171 0.90400
0.83950 1.20006 1.16597 0.94549 0.98964 1.20104 0.98756 0.97713
0.92206 1.19557 1.11349 0.93086 0.98941 1.17899 0.99781 0.91721
0.89987 1.41448 1.54079 1.12184 1.11104 0.77361 1.22548 1.16180
0.87765 0.94801 1.17869 0.97734 0.89446 0.91893 1.18497 1.17049
1.03727 1.06992 0.91483 1.25561 0.94688 0.98583 0.95911 1.69692
1.18836 1.31591 1.26340 0.86400 0.78426 0.80886 0.81079 1.19761
1.20807 1.19282 1.18969 1.10988 0.96896 0.92454 1.23533 0.90631
0.86674 0.94548 1.68254 1.15990 1.10050 1.24444 1.23543 0.91139
1.02044 0.86813 1.19581 1.03792 0.93477 0.86981 1.91543 1.86735
1.81742 1.49998 1.23436 0.93931 0.90419 0.96265 1.68265 1.10144
1.40845 1.00534 0.92340 0.91618 0.90299 0.74346 0.87673 0.87796
0.88611 0.81080 0.91808 0.80181 0.80239
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.19 9.31 37.16 0.35 -1.84 16
2 C 0.22 3.51 2.65 -69.09 -0.18 3.32 16
3 H 0.10 1.59 6.72 -51.93 -0.35 1.24 16
4 N -0.73 -14.44 5.22 -53.18 -0.28 -14.72 16
5 C 0.28 5.96 6.65 -83.66 -0.56 5.40 16
6 C -0.28 -5.20 8.71 -39.32 -0.34 -5.55 16
7 C -0.07 -1.23 10.00 -39.60 -0.40 -1.63 16
8 C -0.21 -4.05 10.07 -39.33 -0.40 -4.44 16
9 C 0.12 2.70 7.23 -83.92 -0.61 2.10 16
10 N -0.59 -12.95 5.99 -9.80 -0.06 -13.01 16
11 H 0.39 7.13 8.96 -40.82 -0.37 6.76 16
12 C -0.09 -2.26 10.77 -15.59 -0.17 -2.43 16
13 C 0.04 0.96 5.98 -104.81 -0.63 0.33 16
14 C -0.43 -11.45 8.83 -38.03 -0.34 -11.79 16
15 H 0.07 1.73 5.63 -52.49 -0.30 1.43 16
16 C 0.06 1.63 5.47 -17.34 -0.09 1.54 16
17 N -0.83 -22.05 10.80 55.54 0.60 -21.45 16
18 Si 0.91 19.67 29.56 -169.99 -5.02 14.64 16
19 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16
20 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16
21 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16
22 C -0.18 -4.49 6.27 -104.75 -0.66 -5.14 16
23 C 0.31 4.84 6.58 -157.21 -1.03 3.80 16
24 N -0.47 -7.41 9.59 -10.68 -0.10 -7.51 16
25 C 0.13 1.69 11.30 -17.13 -0.19 1.50 16
26 C -0.01 -0.16 7.39 -39.15 -0.29 -0.45 16
27 F -0.12 -1.31 17.30 2.25 0.04 -1.27 16
28 C 0.13 1.43 11.30 -17.13 -0.19 1.23 16
29 N -0.49 -6.72 10.32 -10.68 -0.11 -6.83 16
30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16
31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16
32 H 0.08 1.07 7.24 -51.93 -0.38 0.69 16
33 H 0.42 8.96 5.02 -40.82 -0.21 8.75 16
34 H 0.11 1.71 5.86 -52.48 -0.31 1.40 16
35 H 0.10 1.55 8.06 -52.49 -0.42 1.13 16
36 H 0.10 1.64 8.06 -52.48 -0.42 1.21 16
37 H 0.17 4.47 6.36 -52.48 -0.33 4.14 16
38 H 0.27 6.70 8.30 -40.82 -0.34 6.36 16
39 H 0.18 1.82 8.06 -52.49 -0.42 1.40 16
40 H 0.18 1.34 8.06 -52.48 -0.42 0.92 16
LS Contribution 341.20 15.07 5.14 5.14
Total: -1.00 -29.84 341.20 -9.42 -39.27
By element:
Atomic # 1 Polarization: 23.69 SS G_CDS: -3.90 Total: 19.78 kcal
Atomic # 6 Polarization: -8.32 SS G_CDS: -5.73 Total: -14.05 kcal
Atomic # 7 Polarization: -63.56 SS G_CDS: 0.05 Total: -63.51 kcal
Atomic # 9 Polarization: -1.31 SS G_CDS: 0.04 Total: -1.27 kcal
Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.64 kcal
Total LS contribution 5.14 Total: 5.14 kcal
Total: -29.84 -9.42 -39.27 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001171118676.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 102.975 kcal
(2) G-P(sol) polarization free energy of solvation -29.844 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.131 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.425 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.269 kcal
(6) G-S(sol) free energy of system = (1) + (5) 63.706 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds