Wall clock time and date at job start Tue Mar 31 2020 16:39:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09005 * 109.47005 * 2 1
4 4 N 1.46491 * 109.47232 * 120.00284 * 2 1 3
5 5 C 1.39412 * 120.00050 * 275.00183 * 4 2 1
6 6 C 1.38731 * 120.22704 * 5.35748 * 5 4 2
7 7 C 1.38449 * 120.15405 * 179.97438 * 6 5 4
8 8 C 1.37987 * 120.70471 * 0.02562 * 7 6 5
9 9 C 1.39158 * 120.13850 * 0.02562 * 8 7 6
10 10 N 1.38136 * 132.75539 * 180.02562 * 9 8 7
11 11 H 0.96998 * 124.69639 * 359.97438 * 10 9 8
12 12 C 1.35656 * 110.61002 * 180.02562 * 10 9 8
13 13 C 1.38960 * 109.24584 * 359.97438 * 12 10 9
14 14 C 1.40914 * 126.93395 * 179.97438 * 13 12 10
15 15 H 1.07999 * 119.99671 * 158.40323 * 14 13 12
16 16 C 1.39671 * 120.00158 * 338.40351 * 14 13 12
17 17 N 1.31084 * 119.99729 * 359.97438 * 16 14 13
18 18 Si 1.86793 * 120.00318 * 180.02562 * 16 14 13
19 19 H 1.48502 * 109.47215 * 59.99389 * 18 16 14
20 20 H 1.48497 * 109.47439 * 180.02562 * 18 16 14
21 21 H 1.48499 * 109.47007 * 300.00067 * 18 16 14
22 22 C 1.39772 * 120.22762 * 185.37658 * 5 4 2
23 23 C 1.50700 * 109.47280 * 240.00449 * 2 1 3
24 24 N 1.31777 * 119.09156 * 284.73200 * 23 2 1
25 25 C 1.32323 * 120.84761 * 179.71900 * 24 23 2
26 26 C 1.38818 * 119.07023 * 0.53636 * 25 24 23
27 27 F 1.35092 * 120.82562 * 179.75402 * 26 25 24
28 28 C 1.38825 * 118.34442 * 359.73949 * 26 25 24
29 29 N 1.31790 * 119.09194 * 104.99569 * 23 2 1
30 30 H 1.09002 * 109.47453 * 59.99679 * 1 2 3
31 31 H 1.09001 * 109.47186 * 179.97438 * 1 2 3
32 32 H 1.09000 * 109.47246 * 299.99678 * 1 2 3
33 33 H 0.96996 * 120.00187 * 95.00119 * 4 2 1
34 34 H 1.08004 * 119.92073 * 0.02562 * 6 5 4
35 35 H 1.07996 * 119.65126 * 180.29191 * 7 6 5
36 36 H 1.08005 * 119.93377 * 179.97438 * 8 7 6
37 37 H 1.08004 * 125.38184 * 179.97438 * 12 10 9
38 38 H 0.97001 * 120.00329 * 179.97438 * 17 16 14
39 39 H 1.08000 * 120.46460 * 180.27900 * 25 24 23
40 40 H 1.08003 * 120.46015 * 180.02562 * 28 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0183 -0.6906 1.1961
5 6 2.1515 0.0048 2.3970
6 6 1.7195 1.3195 2.4944
7 6 1.8519 2.0085 3.6879
8 6 2.4130 1.4020 4.7930
9 6 2.8543 0.0844 4.7183
10 7 3.4415 -0.7616 5.6390
11 1 3.6455 -0.5228 6.5567
12 6 3.6944 -1.9723 5.0817
13 6 3.2755 -1.9632 3.7568
14 6 3.3616 -3.0248 2.8341
15 1 2.7154 -3.0420 1.9689
16 6 4.2826 -4.0547 3.0385
17 7 5.0673 -4.0334 4.0884
18 14 4.3974 -5.4616 1.8151
19 1 4.7499 -4.9255 0.4759
20 1 5.4438 -6.4180 2.2573
21 1 3.0891 -6.1600 1.7399
22 6 2.7215 -0.6177 3.5111
23 6 2.0324 -0.7103 -1.2305
24 7 1.9699 -2.0256 -1.2814
25 6 2.3960 -2.6844 -2.3470
26 6 2.9239 -1.9710 -3.4145
27 9 3.3739 -2.6078 -4.5177
28 6 2.9777 -0.5870 -3.3202
29 7 2.5269 0.0008 -2.2238
30 1 -0.3634 0.5139 -0.8900
31 1 -0.3633 -1.0277 -0.0005
32 1 -0.3634 0.5138 0.8900
33 1 2.2491 -1.6317 1.1525
34 1 1.2780 1.8064 1.6373
35 1 1.5085 3.0302 3.7560
36 1 2.5107 1.9513 5.7178
37 1 4.1495 -2.8109 5.5877
38 1 5.7067 -4.7488 4.2306
39 1 2.3377 -3.7621 -2.3840
40 1 3.3813 0.0017 -4.1307
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001171118676.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 16:39:11
Heat of formation + Delta-G solvation = 46.167096 kcal
Electronic energy + Delta-G solvation = -26939.587997 eV
Core-core repulsion = 23054.473584 eV
Total energy + Delta-G solvation = -3885.114413 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 326.124 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-50.18036 -42.28025 -41.32174 -38.54174 -36.41767 -35.25209 -35.08128 -33.39027
-31.67834 -30.46887 -29.51933 -28.71056 -26.48107 -26.19314 -25.68793 -23.47600
-22.57915 -21.68325 -21.23748 -19.66822 -19.03983 -18.73100 -17.99978 -17.65823
-17.22562 -17.01271 -16.52272 -16.08508 -15.99105 -15.61660 -15.48530 -15.10571
-14.86408 -14.47368 -14.33369 -14.31989 -14.21889 -13.91661 -13.31309 -13.19200
-12.97978 -12.91573 -12.79632 -12.42582 -12.39963 -12.20410 -12.11211 -11.98791
-11.59633 -11.48697 -11.09126 -10.72141 -10.44084 -10.38225 -9.18739 -8.64354
-8.37053 -7.69526 -5.92377 -0.54232 -0.21692 0.87525 1.17236 1.36811
1.40066 1.47438 2.26241 2.27953 2.38980 2.51797 2.62170 2.69785
2.98114 3.16989 3.26955 3.53121 3.57902 3.68925 3.94702 4.24326
4.25926 4.41413 4.49444 4.57594 4.65767 4.80834 4.86981 4.94345
5.08004 5.12353 5.24933 5.31223 5.35150 5.44993 5.64476 5.66342
5.83913 6.01930 6.09582 6.15463 6.54601 6.73562 6.80352 6.91345
7.03580 7.18032 7.29318 7.48648 8.65294
Molecular weight = 326.12amu
Principal moments of inertia in cm(-1)
A = 0.009633 B = 0.005370 C = 0.003632
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2905.862190 B = 5213.023590 C = 7707.673994
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C 0.220 3.780
3 H 0.109 0.891
4 N -0.739 5.739
5 C 0.261 3.739
6 C -0.269 4.269
7 C -0.054 4.054
8 C -0.217 4.217
9 C 0.111 3.889
10 N -0.585 5.585
11 H 0.409 0.591
12 C -0.106 4.106
13 C -0.001 4.001
14 C -0.452 4.452
15 H 0.065 0.935
16 C 0.017 3.983
17 N -0.863 5.863
18 Si 0.970 3.030
19 H -0.268 1.268
20 H -0.276 1.276
21 H -0.262 1.262
22 C -0.226 4.226
23 C 0.297 3.703
24 N -0.506 5.506
25 C 0.120 3.880
26 C -0.003 4.003
27 F -0.114 7.114
28 C 0.133 3.867
29 N -0.494 5.494
30 H 0.082 0.918
31 H 0.052 0.948
32 H 0.078 0.922
33 H 0.403 0.597
34 H 0.135 0.865
35 H 0.149 0.851
36 H 0.124 0.876
37 H 0.157 0.843
38 H 0.274 0.726
39 H 0.200 0.800
40 H 0.220 0.780
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.788 7.063 -12.626 15.582
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C 0.112 3.888
3 H 0.127 0.873
4 N -0.371 5.371
5 C 0.157 3.843
6 C -0.294 4.294
7 C -0.074 4.074
8 C -0.240 4.240
9 C -0.001 4.001
10 N -0.188 5.188
11 H 0.245 0.755
12 C -0.230 4.230
13 C -0.006 4.006
14 C -0.486 4.486
15 H 0.083 0.917
16 C -0.190 4.190
17 N -0.494 5.494
18 Si 0.794 3.206
19 H -0.193 1.193
20 H -0.201 1.201
21 H -0.186 1.186
22 C -0.235 4.235
23 C 0.029 3.971
24 N -0.219 5.219
25 C -0.047 4.047
26 C -0.027 4.027
27 F -0.092 7.092
28 C -0.035 4.035
29 N -0.207 5.207
30 H 0.101 0.899
31 H 0.071 0.929
32 H 0.097 0.903
33 H 0.242 0.758
34 H 0.153 0.847
35 H 0.166 0.834
36 H 0.142 0.858
37 H 0.174 0.826
38 H 0.084 0.916
39 H 0.217 0.783
40 H 0.236 0.764
Dipole moment (debyes) X Y Z Total
from point charges -5.922 7.386 -11.788 15.118
hybrid contribution 1.124 -2.044 -0.731 2.445
sum -4.798 5.341 -12.519 14.432
Atomic orbital electron populations
1.22192 0.92417 1.02786 1.03722 1.19559 0.95247 0.95437 0.78533
0.87285 1.44940 1.72806 1.13072 1.06293 1.17429 0.91371 0.91530
0.83999 1.20415 1.15256 0.93336 1.00428 1.20666 0.96333 0.99380
0.91005 1.19938 1.11301 0.91884 1.00904 1.18380 0.99449 0.92857
0.89454 1.41272 1.54408 1.11217 1.11911 0.75534 1.22306 1.16928
0.88784 0.94971 1.18277 0.98899 0.90925 0.92535 1.18731 1.17802
1.04752 1.07352 0.91730 1.26371 0.94188 1.00765 0.97661 1.69800
1.19428 1.32435 1.27769 0.85408 0.78654 0.77815 0.78760 1.19335
1.20083 1.18606 1.19298 1.12972 0.96599 0.94637 1.23402 0.91808
0.86875 0.95000 1.68212 1.17348 1.10464 1.25865 1.23916 0.91026
1.03109 0.86659 1.19519 1.02899 0.93645 0.86654 1.91569 1.86494
1.81676 1.49510 1.24065 0.92541 0.90683 0.96205 1.68284 1.10528
1.40891 1.01012 0.89873 0.92874 0.90280 0.75848 0.84688 0.83357
0.85778 0.82643 0.91596 0.78313 0.76369
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.89 9.31 71.98 0.67 -3.22 16
2 C 0.22 6.74 2.65 44.25 0.12 6.85 16
3 H 0.11 3.16 6.72 -2.38 -0.02 3.14 16
4 N -0.74 -29.41 5.22 -322.16 -1.68 -31.09 16
5 C 0.26 11.22 6.65 38.43 0.26 11.47 16
6 C -0.27 -9.49 8.71 22.44 0.20 -9.30 16
7 C -0.05 -1.77 10.00 22.26 0.22 -1.55 16
8 C -0.22 -8.02 10.07 22.43 0.23 -7.80 16
9 C 0.11 5.05 7.23 38.87 0.28 5.33 16
10 N -0.59 -26.50 5.99 -184.92 -1.11 -27.61 16
11 H 0.41 15.12 8.96 -92.71 -0.83 14.29 16
12 C -0.11 -5.65 10.77 84.28 0.91 -4.74 16
13 C 0.00 -0.04 5.98 -19.99 -0.12 -0.16 16
14 C -0.45 -25.35 8.83 23.27 0.21 -25.15 16
15 H 0.06 3.52 5.63 -2.91 -0.02 3.50 16
16 C 0.02 0.93 5.47 85.15 0.47 1.40 16
17 N -0.86 -47.63 10.80 21.79 0.24 -47.40 16
18 Si 0.97 41.43 29.56 68.60 2.03 43.45 16
19 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16
20 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16
21 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16
22 C -0.23 -11.33 6.27 -19.95 -0.13 -11.45 16
23 C 0.30 8.91 6.58 138.76 0.91 9.82 16
24 N -0.51 -15.65 9.59 -187.69 -1.80 -17.45 16
25 C 0.12 2.93 11.30 84.76 0.96 3.89 16
26 C 0.00 -0.06 7.39 22.55 0.17 0.10 16
27 F -0.11 -2.17 17.30 44.97 0.78 -1.39 16
28 C 0.13 2.62 11.30 84.76 0.96 3.58 16
29 N -0.49 -12.78 10.32 -187.69 -1.94 -14.72 16
30 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16
31 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16
32 H 0.08 1.99 7.24 -2.39 -0.02 1.98 16
33 H 0.40 18.04 5.02 -92.71 -0.47 17.57 16
34 H 0.14 3.89 5.86 -2.91 -0.02 3.87 16
35 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16
36 H 0.12 3.83 8.06 -2.91 -0.02 3.81 16
37 H 0.16 8.69 6.36 -2.91 -0.02 8.67 16
38 H 0.27 14.05 8.30 -92.71 -0.77 13.28 16
39 H 0.20 3.82 8.06 -2.91 -0.02 3.79 16
40 H 0.22 2.41 8.06 -2.91 -0.02 2.39 16
Total: -1.00 -67.93 341.20 2.65 -65.28
By element:
Atomic # 1 Polarization: 52.00 SS G_CDS: -0.16 Total: 51.84 kcal
Atomic # 6 Polarization: -27.22 SS G_CDS: 6.30 Total: -20.92 kcal
Atomic # 7 Polarization: -131.97 SS G_CDS: -6.29 Total: -138.26 kcal
Atomic # 9 Polarization: -2.17 SS G_CDS: 0.78 Total: -1.39 kcal
Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.45 kcal
Total: -67.93 2.65 -65.28 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001171118676.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 111.446 kcal
(2) G-P(sol) polarization free energy of solvation -67.930 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.516 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.652 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.279 kcal
(6) G-S(sol) free energy of system = (1) + (5) 46.167 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds