Wall clock time and date at job start Tue Mar 31 2020 16:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.30028 * 2 1 4 4 C 1.54389 * 110.34604 * 237.71272 * 2 1 3 5 5 N 1.48145 * 104.61133 * 264.99527 * 4 2 1 6 6 C 1.34784 * 127.83867 * 140.41880 * 5 4 2 7 7 O 1.21739 * 119.99336 * 353.90774 * 6 5 4 8 8 C 1.46336 * 120.00504 * 173.91030 * 6 5 4 9 9 C 1.36735 * 125.43809 * 173.06034 * 8 6 5 10 10 C 1.37350 * 113.32950 * 180.02562 * 9 8 6 11 11 C 1.34204 * 115.04747 * 359.97438 * 10 9 8 12 12 F 1.35097 * 124.54388 * 180.02562 * 11 10 9 13 13 S 1.70624 * 110.91652 * 359.73175 * 11 10 9 14 14 C 1.48147 * 104.32847 * 320.41132 * 5 4 2 15 15 C 1.54280 * 110.34153 * 122.16768 * 2 1 3 16 16 C 1.52998 * 110.34390 * 359.90107 * 15 2 1 17 17 C 1.53000 * 110.34646 * 237.74571 * 15 2 1 18 18 N 1.46502 * 109.47313 * 180.02562 * 17 15 2 19 19 C 1.36928 * 119.99974 * 179.97438 * 18 17 15 20 20 H 1.07995 * 120.00247 * 359.72196 * 19 18 17 21 21 C 1.38817 * 120.00176 * 180.02562 * 19 18 17 22 22 N 1.31612 * 120.00296 * 180.02562 * 21 19 18 23 23 Si 1.86807 * 119.99743 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.46554 * 90.00278 * 23 21 19 25 25 H 1.48495 * 109.47428 * 210.00376 * 23 21 19 26 26 H 1.48495 * 109.47068 * 330.00677 * 23 21 19 27 27 H 1.08997 * 109.47403 * 297.82952 * 1 2 3 28 28 H 1.09000 * 109.47043 * 57.82773 * 1 2 3 29 29 H 1.09004 * 109.46970 * 177.82493 * 1 2 3 30 30 H 1.08998 * 110.40638 * 23.77555 * 4 2 1 31 31 H 1.08994 * 110.40788 * 146.21307 * 4 2 1 32 32 H 1.07996 * 123.33517 * 359.97272 * 9 8 6 33 33 H 1.07997 * 122.47682 * 179.97438 * 10 9 8 34 34 H 1.09002 * 110.40946 * 280.80551 * 14 5 4 35 35 H 1.09001 * 110.40837 * 158.37454 * 14 5 4 36 36 H 1.09000 * 109.47211 * 298.52222 * 16 15 2 37 37 H 1.09000 * 109.47245 * 58.52181 * 16 15 2 38 38 H 1.09004 * 109.47279 * 178.51998 * 16 15 2 39 39 H 1.08991 * 109.47164 * 59.99935 * 17 15 2 40 40 H 1.09003 * 109.46822 * 300.00312 * 17 15 2 41 41 H 0.97001 * 119.99642 * 0.02562 * 18 17 15 42 42 H 0.97000 * 119.99907 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0668 -0.7732 -1.2237 5 7 2.3140 -2.1444 -0.7204 6 6 2.0776 -3.3119 -1.3511 7 8 1.5034 -3.3183 -2.4245 8 6 2.5109 -4.5716 -0.7456 9 6 2.2143 -5.8208 -1.2160 10 6 2.7490 -6.8303 -0.4536 11 6 3.4621 -6.4238 0.6082 12 9 4.0714 -7.2521 1.4844 13 16 3.5027 -4.7204 0.6986 14 6 2.8802 -1.9415 0.6335 15 6 2.0663 -0.7702 1.2245 16 6 0.9061 -1.2991 2.0701 17 6 2.9691 0.1329 2.0674 18 7 3.4676 -0.6167 3.2232 19 6 4.3004 -0.0102 4.1251 20 1 4.5934 1.0193 3.9821 21 6 4.7733 -0.7207 5.2200 22 7 5.5734 -0.1376 6.0872 23 14 4.2727 -2.5039 5.4632 24 1 5.2496 -3.3897 4.7804 25 1 4.2497 -2.8181 6.9144 26 1 2.9210 -2.7214 4.8881 27 1 -0.3634 0.4797 0.9088 28 1 -0.3633 0.5472 -0.8699 29 1 -0.3633 -1.0270 -0.0390 30 1 1.3224 -0.7890 -2.0198 31 1 2.9950 -0.3257 -1.5789 32 1 1.6179 -5.9962 -2.0991 33 1 2.6062 -7.8742 -0.6909 34 1 3.9355 -1.6763 0.5683 35 1 2.7496 -2.8387 1.2386 36 1 0.3122 -0.4617 2.4364 37 1 0.2794 -1.9499 1.4605 38 1 1.3003 -1.8625 2.9160 39 1 2.3997 0.9961 2.4118 40 1 3.8111 0.4707 1.4631 41 1 3.2082 -1.5429 3.3490 42 1 5.9040 -0.6342 6.8520 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183575335.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:57 Heat of formation + Delta-G solvation = -19.817802 kcal Electronic energy + Delta-G solvation = -26304.171295 eV Core-core repulsion = 22519.346763 eV Total energy + Delta-G solvation = -3784.824533 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.121 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.27008 -40.59626 -38.83647 -37.37424 -35.01652 -33.41016 -31.82803 -30.28827 -29.68399 -27.63995 -26.07068 -25.91572 -24.74046 -23.08085 -21.71451 -20.77959 -19.75908 -18.94479 -18.50941 -17.70437 -16.91744 -16.54173 -16.29157 -16.01795 -15.35701 -14.72468 -14.68104 -14.53895 -14.32728 -14.10212 -13.92083 -13.65799 -13.28333 -13.01105 -12.76816 -12.62755 -12.43390 -12.26981 -12.10961 -11.91304 -11.71777 -11.49246 -11.31552 -11.01522 -10.93098 -10.56685 -10.44313 -10.34891 -10.23175 -10.05101 -9.62799 -9.08768 -8.99770 -8.96387 -8.73942 -7.31115 -5.82986 -3.19047 0.09246 0.80318 1.39950 1.95493 2.71115 2.97414 3.29467 3.31171 3.39909 4.05924 4.20114 4.37440 4.52158 4.63380 4.75030 4.96984 5.05438 5.11229 5.13774 5.27477 5.41335 5.42364 5.47191 5.50339 5.53949 5.61402 5.66750 5.73038 5.77650 5.81914 5.86893 5.90907 6.00834 6.09090 6.19706 6.35668 6.42957 6.54843 6.61015 7.31769 7.90357 7.92301 8.35682 9.13871 9.86048 10.04879 11.35414 Molecular weight = 326.12amu Principal moments of inertia in cm(-1) A = 0.009810 B = 0.005908 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2853.589817 B = 4738.455190 C = 7113.253666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 H 0.094 0.906 4 C 0.113 3.887 5 N -0.618 5.618 6 C 0.615 3.385 7 O -0.533 6.533 8 C -0.266 4.266 9 C -0.035 4.035 10 C -0.189 4.189 11 C -0.038 4.038 12 F -0.100 7.100 13 S 0.255 5.745 14 C 0.101 3.899 15 C -0.075 4.075 16 C -0.138 4.138 17 C 0.171 3.829 18 N -0.754 5.754 19 C -0.244 4.244 20 H 0.091 0.909 21 C 0.008 3.992 22 N -0.932 5.932 23 Si 0.872 3.128 24 H -0.282 1.282 25 H -0.289 1.289 26 H -0.276 1.276 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.162 0.838 33 H 0.155 0.845 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.052 0.948 38 H 0.060 0.940 39 H 0.035 0.965 40 H 0.032 0.968 41 H 0.360 0.640 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.647 -7.784 -15.151 19.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 H 0.112 0.888 4 C -0.009 4.009 5 N -0.351 5.351 6 C 0.404 3.596 7 O -0.412 6.412 8 C -0.387 4.387 9 C -0.067 4.067 10 C -0.221 4.221 11 C -0.175 4.175 12 F -0.079 7.079 13 S 0.522 5.478 14 C -0.023 4.023 15 C -0.076 4.076 16 C -0.195 4.195 17 C 0.044 3.956 18 N -0.401 5.401 19 C -0.374 4.374 20 H 0.109 0.891 21 C -0.188 4.188 22 N -0.580 5.580 23 Si 0.702 3.298 24 H -0.208 1.208 25 H -0.215 1.215 26 H -0.202 1.202 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.105 0.895 31 H 0.095 0.905 32 H 0.180 0.820 33 H 0.173 0.827 34 H 0.111 0.889 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.053 0.947 40 H 0.050 0.950 41 H 0.193 0.807 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.111 -6.761 -14.613 18.029 hybrid contribution -0.617 -2.760 -0.196 2.835 sum -8.729 -9.521 -14.809 19.651 Atomic orbital electron populations 1.21915 0.94268 1.01988 1.01798 1.22144 0.96566 0.99670 0.93183 0.88773 1.22465 1.01266 0.80073 0.97133 1.48810 1.62874 1.05618 1.17768 1.16274 0.78637 0.80827 0.83912 1.90837 1.42613 1.86250 1.21536 1.24457 1.12374 0.98090 1.03752 1.20410 0.97740 0.88950 0.99636 1.20249 1.03111 1.02670 0.96119 1.22714 1.03473 0.96606 0.94731 1.91539 1.80445 1.69808 1.66121 1.84503 1.46516 0.94360 1.22456 1.22883 0.99066 0.98520 0.81823 1.21750 0.96125 0.94674 0.95089 1.21938 0.97086 1.01308 0.99185 1.20727 0.94034 0.92924 0.87938 1.42738 1.58627 1.11783 1.26912 1.19027 1.19489 0.97777 1.01128 0.89091 1.24636 0.99417 0.97430 0.97275 1.69683 1.37191 1.36223 1.14867 0.86738 0.78380 0.87028 0.77612 1.20810 1.21537 1.20182 0.91763 0.92841 0.92444 0.89529 0.90532 0.82023 0.82749 0.88946 0.90555 0.91518 0.92926 0.92112 0.94699 0.94994 0.80693 0.92994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 7.92 37.16 0.29 -1.12 16 2 C -0.10 -1.03 3.31 -89.22 -0.30 -1.33 16 3 H 0.09 0.93 7.71 -51.93 -0.40 0.53 16 4 C 0.11 1.25 6.62 -2.41 -0.02 1.23 16 5 N -0.62 -7.96 3.32 -170.96 -0.57 -8.53 16 6 C 0.61 8.69 7.85 -13.00 -0.10 8.59 16 7 O -0.53 -8.73 17.10 5.15 0.09 -8.64 16 8 C -0.27 -3.38 6.35 -36.87 -0.23 -3.62 16 9 C -0.03 -0.38 10.01 -40.45 -0.40 -0.79 16 10 C -0.19 -1.98 10.16 -41.33 -0.42 -2.40 16 11 C -0.04 -0.47 8.10 29.31 0.24 -0.23 16 12 F -0.10 -1.32 17.32 2.25 0.04 -1.28 16 13 S 0.26 3.24 18.82 -107.50 -2.02 1.22 16 14 C 0.10 1.36 4.60 -2.41 -0.01 1.35 16 15 C -0.07 -1.00 0.73 -153.11 -0.11 -1.11 16 16 C -0.14 -1.86 7.07 37.16 0.26 -1.60 16 17 C 0.17 2.88 4.87 -4.04 -0.02 2.86 16 18 N -0.75 -16.21 4.93 -59.91 -0.30 -16.50 16 19 C -0.24 -6.50 10.47 -15.06 -0.16 -6.66 16 20 H 0.09 2.61 8.06 -52.49 -0.42 2.18 16 21 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 22 N -0.93 -28.40 13.97 55.49 0.78 -27.63 16 23 Si 0.87 21.09 27.74 -169.99 -4.71 16.37 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 H -0.28 -6.15 6.52 56.52 0.37 -5.78 16 27 H 0.06 0.63 6.84 -51.93 -0.36 0.27 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.63 6.76 -51.93 -0.35 0.27 16 30 H 0.09 0.96 7.56 -51.93 -0.39 0.57 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.16 1.54 8.06 -52.49 -0.42 1.11 16 33 H 0.15 1.24 8.06 -52.49 -0.42 0.81 16 34 H 0.09 1.27 7.83 -51.93 -0.41 0.87 16 35 H 0.08 1.06 4.52 -29.43 -0.13 0.93 16 36 H 0.07 0.86 6.89 -51.93 -0.36 0.50 16 37 H 0.05 0.65 6.71 -51.93 -0.35 0.30 16 38 H 0.06 0.93 6.79 -51.93 -0.35 0.58 16 39 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.03 0.54 8.10 -51.93 -0.42 0.12 16 41 H 0.36 7.57 4.05 -40.82 -0.17 7.40 16 42 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 348.17 15.07 5.25 5.25 Total: -1.00 -31.12 348.17 -7.91 -39.03 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -5.39 Total: 5.40 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -1.07 Total: -4.69 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: -0.09 Total: -52.66 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.09 Total: -8.64 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.04 Total: -1.28 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.71 Total: 16.37 kcal Atomic # 16 Polarization: 3.24 SS G_CDS: -2.02 Total: 1.22 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.12 -7.91 -39.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183575335.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.211 kcal (2) G-P(sol) polarization free energy of solvation -31.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds