Wall clock time and date at job start Tue Mar 31 2020 16:28:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.08997 * 109.50205 * 2 1
4 4 C 1.53198 * 109.52134 * 120.07915 * 2 1 3
5 5 N 1.46924 * 108.77441 * 174.59674 * 4 2 1
6 6 C 1.34779 * 120.62440 * 126.41385 * 5 4 2
7 7 O 1.21728 * 120.00398 * 353.64853 * 6 5 4
8 8 C 1.46349 * 119.99588 * 173.64685 * 6 5 4
9 9 C 1.36738 * 125.43120 * 149.36857 * 8 6 5
10 10 C 1.37350 * 113.32444 * 180.02562 * 9 8 6
11 11 C 1.34203 * 115.05112 * 359.97438 * 10 9 8
12 12 F 1.35094 * 124.54431 * 180.02562 * 11 10 9
13 13 S 1.70626 * 110.91550 * 359.72870 * 11 10 9
14 14 C 1.46917 * 118.74257 * 306.39671 * 5 4 2
15 15 C 1.53188 * 108.77880 * 53.60800 * 14 5 4
16 16 C 1.53035 * 109.49765 * 239.92921 * 2 1 3
17 17 H 1.08996 * 109.46586 * 298.66704 * 16 2 1
18 18 C 1.53008 * 109.45700 * 58.63860 * 16 2 1
19 19 N 1.46502 * 109.47053 * 185.00136 * 18 16 2
20 20 C 1.36938 * 119.99722 * 180.02562 * 19 18 16
21 21 H 1.08001 * 120.00344 * 359.97438 * 20 19 18
22 22 C 1.38808 * 119.99829 * 179.97438 * 20 19 18
23 23 N 1.31621 * 120.00091 * 359.97438 * 22 20 19
24 24 Si 1.86798 * 120.00015 * 179.97438 * 22 20 19
25 25 H 1.48494 * 109.47392 * 89.99727 * 24 22 20
26 26 H 1.48503 * 109.47252 * 209.99802 * 24 22 20
27 27 H 1.48494 * 109.47128 * 329.99396 * 24 22 20
28 28 H 1.09001 * 109.47519 * 180.02562 * 1 2 3
29 29 H 1.08998 * 109.47126 * 300.07070 * 1 2 3
30 30 H 1.09000 * 109.46909 * 60.06108 * 1 2 3
31 31 H 1.08991 * 109.58849 * 294.39034 * 4 2 1
32 32 H 1.09001 * 109.58360 * 54.67073 * 4 2 1
33 33 H 1.07994 * 123.33687 * 0.02562 * 9 8 6
34 34 H 1.08004 * 122.47311 * 179.97438 * 10 9 8
35 35 H 1.09001 * 109.58969 * 173.39607 * 14 5 4
36 36 H 1.09003 * 109.58892 * 293.67721 * 14 5 4
37 37 H 1.09001 * 109.50553 * 185.41607 * 15 14 5
38 38 H 1.08996 * 109.50352 * 65.31228 * 15 14 5
39 39 H 1.08996 * 109.47085 * 64.99662 * 18 16 2
40 40 H 1.09007 * 109.46765 * 304.99727 * 18 16 2
41 41 H 0.96993 * 120.00251 * 359.97438 * 19 18 16
42 42 H 0.96995 * 119.99939 * 0.02562 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8939 1.0274 0.0000
4 6 2.0419 -0.7237 1.2495
5 7 3.5052 -0.8285 1.1690
6 6 4.2817 -0.3855 2.1776
7 8 3.7820 0.2106 3.1140
8 6 5.7258 -0.6211 2.1470
9 6 6.6742 0.1961 2.6970
10 6 7.9564 -0.2641 2.5219
11 6 8.0579 -1.4217 1.8507
12 9 9.2232 -2.0457 1.5715
13 16 6.5175 -2.0040 1.4041
14 6 4.1058 -1.4256 -0.0314
15 6 3.5709 -0.6941 -1.2665
16 6 2.0408 -0.7228 -1.2484
17 1 1.6973 -1.7572 -1.2353
18 6 1.5031 -0.0230 -2.4984
19 7 1.8925 -0.7827 -3.6890
20 6 1.5214 -0.3447 -4.9322
21 1 0.9414 0.5605 -5.0351
22 6 1.8908 -1.0642 -6.0603
23 7 2.5981 -2.1672 -5.9351
24 14 1.3841 -0.4672 -7.7563
25 1 2.4304 0.4380 -8.2955
26 1 1.2219 -1.6319 -8.6631
27 1 0.0969 0.2668 -7.6585
28 1 -0.3634 -1.0276 0.0005
29 1 -0.3633 0.5149 0.8893
30 1 -0.3633 0.5129 -0.8905
31 1 1.7644 -0.1581 2.1388
32 1 1.6043 -1.7207 1.2992
33 1 6.4384 1.1126 3.2174
34 1 8.8192 0.2665 2.8969
35 1 5.1901 -1.3231 0.0128
36 1 3.8406 -2.4815 -0.0862
37 1 3.9334 -1.1885 -2.1678
38 1 3.9154 0.3399 -1.2546
39 1 1.9174 0.9834 -2.5579
40 1 0.4159 0.0342 -2.4434
41 1 2.4137 -1.5955 -3.5967
42 1 2.8609 -2.4774 -5.0545
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001185787189.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 16:28:18
Heat of formation + Delta-G solvation = -32.702378 kcal
Electronic energy + Delta-G solvation = -25463.070727 eV
Core-core repulsion = 21677.687478 eV
Total energy + Delta-G solvation = -3785.383250 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 326.121 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-49.42604 -40.54265 -38.54165 -37.47869 -35.25911 -33.89320 -32.18244 -30.33021
-29.92730 -26.98704 -26.80179 -24.98394 -23.60586 -22.79154 -21.94129 -21.22999
-19.94679 -19.67395 -18.52849 -17.37581 -17.08251 -16.81313 -16.34686 -15.94928
-15.35992 -15.07427 -14.84931 -14.67835 -14.39666 -14.03143 -13.66183 -13.58567
-13.41166 -13.31413 -13.11818 -12.61014 -12.52610 -12.38369 -12.04967 -11.94834
-11.75948 -11.34137 -11.02399 -10.75928 -10.71624 -10.51438 -10.44018 -10.20947
-10.15380 -9.99528 -9.20338 -9.12824 -8.96130 -8.87913 -8.74760 -7.00323
-6.11970 -3.11232 -0.01345 0.60843 1.18923 1.88067 2.62028 2.88986
3.50827 3.55363 3.69345 3.92735 4.18152 4.62395 4.63078 4.81442
4.84101 4.87708 4.92509 4.93962 5.14479 5.26102 5.34828 5.38253
5.55135 5.58558 5.60324 5.66576 5.72707 5.76998 5.78594 5.82370
5.89995 6.10086 6.15751 6.19323 6.31079 6.37901 6.44106 6.72082
6.81107 7.11222 7.80382 7.83723 8.74498 9.21969 10.08164 10.23212
11.36736
Molecular weight = 326.12amu
Principal moments of inertia in cm(-1)
A = 0.013698 B = 0.003226 C = 0.002718
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2043.614780 B = 8677.909267 C =10298.778683
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.097 4.097
3 H 0.075 0.925
4 C 0.119 3.881
5 N -0.603 5.603
6 C 0.593 3.407
7 O -0.529 6.529
8 C -0.262 4.262
9 C -0.038 4.038
10 C -0.184 4.184
11 C -0.037 4.037
12 F -0.100 7.100
13 S 0.250 5.750
14 C 0.092 3.908
15 C -0.121 4.121
16 C -0.091 4.091
17 H 0.072 0.928
18 C 0.162 3.838
19 N -0.743 5.743
20 C -0.330 4.330
21 H 0.064 0.936
22 C -0.045 4.045
23 N -0.945 5.945
24 Si 1.082 2.918
25 H -0.296 1.296
26 H -0.288 1.288
27 H -0.295 1.295
28 H 0.056 0.944
29 H 0.053 0.947
30 H 0.069 0.931
31 H 0.094 0.906
32 H 0.071 0.929
33 H 0.162 0.838
34 H 0.157 0.843
35 H 0.085 0.915
36 H 0.078 0.922
37 H 0.088 0.912
38 H 0.067 0.933
39 H 0.018 0.982
40 H 0.026 0.974
41 H 0.366 0.634
42 H 0.254 0.746
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.103 1.327 19.093 20.414
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.117 4.117
3 H 0.093 0.907
4 C -0.002 4.002
5 N -0.335 5.335
6 C 0.380 3.620
7 O -0.408 6.408
8 C -0.383 4.383
9 C -0.071 4.071
10 C -0.216 4.216
11 C -0.174 4.174
12 F -0.079 7.079
13 S 0.516 5.484
14 C -0.032 4.032
15 C -0.160 4.160
16 C -0.110 4.110
17 H 0.091 0.909
18 C 0.035 3.965
19 N -0.389 5.389
20 C -0.461 4.461
21 H 0.082 0.918
22 C -0.243 4.243
23 N -0.591 5.591
24 Si 0.913 3.087
25 H -0.223 1.223
26 H -0.214 1.214
27 H -0.222 1.222
28 H 0.075 0.925
29 H 0.072 0.928
30 H 0.087 0.913
31 H 0.112 0.888
32 H 0.089 0.911
33 H 0.179 0.821
34 H 0.174 0.826
35 H 0.102 0.898
36 H 0.096 0.904
37 H 0.106 0.894
38 H 0.086 0.914
39 H 0.036 0.964
40 H 0.044 0.956
41 H 0.199 0.801
42 H 0.065 0.935
Dipole moment (debyes) X Y Z Total
from point charges 6.352 0.196 17.148 18.288
hybrid contribution 1.113 1.248 2.256 2.809
sum 7.465 1.445 19.405 20.841
Atomic orbital electron populations
1.21829 0.94143 1.02256 1.02230 1.21459 0.96298 1.00043 0.93889
0.90675 1.21772 0.77658 1.01212 0.99584 1.47993 1.07371 1.60502
1.17612 1.16823 0.83948 0.78774 0.82413 1.90835 1.73818 1.41336
1.34807 1.24477 0.98012 1.02798 1.13027 1.20420 0.89700 1.00131
0.96812 1.20267 0.99815 0.96985 1.04531 1.22394 0.88639 0.98711
1.07671 1.91538 1.43608 1.80977 1.91776 1.83891 0.92036 1.22150
1.50319 1.22262 0.97923 0.98073 0.84893 1.21896 0.96191 1.01290
0.96589 1.21379 0.94456 1.00273 0.94860 0.90941 1.20688 0.96783
0.93965 0.85063 1.42384 1.65994 1.28738 1.01786 1.20060 1.31980
1.08857 0.85213 0.91833 1.25742 0.99568 0.96606 1.02347 1.70864
1.40042 1.23144 1.25038 0.83206 0.75253 0.75097 0.75178 1.22346
1.21389 1.22187 0.92464 0.92801 0.91251 0.88813 0.91072 0.82085
0.82582 0.89804 0.90397 0.89374 0.91391 0.96449 0.95602 0.80085
0.93485
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.69 8.82 37.16 0.33 -1.37 16
2 C -0.10 -1.21 2.41 -90.50 -0.22 -1.43 16
3 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16
4 C 0.12 1.40 5.73 -3.71 -0.02 1.37 16
5 N -0.60 -7.32 2.97 -174.44 -0.52 -7.84 16
6 C 0.59 7.78 7.57 -13.00 -0.10 7.69 16
7 O -0.53 -8.36 16.40 5.16 0.08 -8.27 16
8 C -0.26 -2.89 5.72 -36.86 -0.21 -3.10 16
9 C -0.04 -0.37 10.13 -40.45 -0.41 -0.78 16
10 C -0.18 -1.61 10.16 -41.33 -0.42 -2.03 16
11 C -0.04 -0.36 8.10 29.31 0.24 -0.12 16
12 F -0.10 -1.04 17.32 2.25 0.04 -1.00 16
13 S 0.25 2.34 19.34 -107.50 -2.08 0.26 16
14 C 0.09 1.05 5.51 -3.72 -0.02 1.03 16
15 C -0.12 -1.70 5.25 -26.61 -0.14 -1.84 16
16 C -0.09 -1.34 1.73 -90.57 -0.16 -1.50 16
17 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16
18 C 0.16 3.13 5.41 -4.04 -0.02 3.11 16
19 N -0.74 -18.05 5.32 -59.90 -0.32 -18.36 16
20 C -0.33 -9.19 9.99 -15.06 -0.15 -9.34 16
21 H 0.06 1.76 7.83 -52.49 -0.41 1.35 16
22 C -0.05 -1.30 5.50 -17.43 -0.10 -1.39 16
23 N -0.94 -28.65 13.70 55.49 0.76 -27.89 16
24 Si 1.08 25.74 29.92 -169.99 -5.09 20.65 16
25 H -0.30 -6.85 7.11 56.52 0.40 -6.45 16
26 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16
27 H -0.30 -6.65 7.11 56.52 0.40 -6.25 16
28 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16
29 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16
30 H 0.07 0.88 6.29 -51.93 -0.33 0.55 16
31 H 0.09 1.14 7.00 -51.93 -0.36 0.77 16
32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16
33 H 0.16 1.36 8.06 -52.49 -0.42 0.94 16
34 H 0.16 1.03 8.06 -52.48 -0.42 0.61 16
35 H 0.08 0.88 4.00 -26.40 -0.11 0.78 16
36 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16
37 H 0.09 1.38 7.15 -51.93 -0.37 1.01 16
38 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16
39 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16
40 H 0.03 0.51 6.14 -51.92 -0.32 0.19 16
41 H 0.37 8.94 5.68 -40.82 -0.23 8.71 16
42 H 0.25 7.51 6.77 -40.82 -0.28 7.23 16
LS Contribution 350.43 15.07 5.28 5.28
Total: -1.00 -32.47 350.43 -8.66 -41.13
By element:
Atomic # 1 Polarization: 11.18 SS G_CDS: -5.43 Total: 5.75 kcal
Atomic # 6 Polarization: -8.31 SS G_CDS: -1.40 Total: -9.71 kcal
Atomic # 7 Polarization: -54.02 SS G_CDS: -0.08 Total: -54.09 kcal
Atomic # 8 Polarization: -8.36 SS G_CDS: 0.08 Total: -8.27 kcal
Atomic # 9 Polarization: -1.04 SS G_CDS: 0.04 Total: -1.00 kcal
Atomic # 14 Polarization: 25.74 SS G_CDS: -5.09 Total: 20.65 kcal
Atomic # 16 Polarization: 2.34 SS G_CDS: -2.08 Total: 0.26 kcal
Total LS contribution 5.28 Total: 5.28 kcal
Total: -32.47 -8.66 -41.13 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001185787189.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 8.426 kcal
(2) G-P(sol) polarization free energy of solvation -32.465 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.039 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.664 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.129 kcal
(6) G-S(sol) free energy of system = (1) + (5) -32.702 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds