Wall clock time and date at job start Tue Mar 31 2020 16:28:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.08997 * 109.50205 * 2 1
4 4 C 1.53198 * 109.52134 * 120.07915 * 2 1 3
5 5 N 1.46924 * 108.77441 * 174.59674 * 4 2 1
6 6 C 1.34779 * 120.62440 * 126.41385 * 5 4 2
7 7 O 1.21728 * 120.00398 * 353.64853 * 6 5 4
8 8 C 1.46349 * 119.99588 * 173.64685 * 6 5 4
9 9 C 1.36738 * 125.43120 * 149.36857 * 8 6 5
10 10 C 1.37350 * 113.32444 * 180.02562 * 9 8 6
11 11 C 1.34203 * 115.05112 * 359.97438 * 10 9 8
12 12 F 1.35094 * 124.54431 * 180.02562 * 11 10 9
13 13 S 1.70626 * 110.91550 * 359.72870 * 11 10 9
14 14 C 1.46917 * 118.74257 * 306.39671 * 5 4 2
15 15 C 1.53188 * 108.77880 * 53.60800 * 14 5 4
16 16 C 1.53035 * 109.49765 * 239.92921 * 2 1 3
17 17 H 1.08996 * 109.46586 * 298.66704 * 16 2 1
18 18 C 1.53008 * 109.45700 * 58.63860 * 16 2 1
19 19 N 1.46502 * 109.47053 * 185.00136 * 18 16 2
20 20 C 1.36938 * 119.99722 * 180.02562 * 19 18 16
21 21 H 1.08001 * 120.00344 * 359.97438 * 20 19 18
22 22 C 1.38808 * 119.99829 * 179.97438 * 20 19 18
23 23 N 1.31621 * 120.00091 * 359.97438 * 22 20 19
24 24 Si 1.86798 * 120.00015 * 179.97438 * 22 20 19
25 25 H 1.48494 * 109.47392 * 89.99727 * 24 22 20
26 26 H 1.48503 * 109.47252 * 209.99802 * 24 22 20
27 27 H 1.48494 * 109.47128 * 329.99396 * 24 22 20
28 28 H 1.09001 * 109.47519 * 180.02562 * 1 2 3
29 29 H 1.08998 * 109.47126 * 300.07070 * 1 2 3
30 30 H 1.09000 * 109.46909 * 60.06108 * 1 2 3
31 31 H 1.08991 * 109.58849 * 294.39034 * 4 2 1
32 32 H 1.09001 * 109.58360 * 54.67073 * 4 2 1
33 33 H 1.07994 * 123.33687 * 0.02562 * 9 8 6
34 34 H 1.08004 * 122.47311 * 179.97438 * 10 9 8
35 35 H 1.09001 * 109.58969 * 173.39607 * 14 5 4
36 36 H 1.09003 * 109.58892 * 293.67721 * 14 5 4
37 37 H 1.09001 * 109.50553 * 185.41607 * 15 14 5
38 38 H 1.08996 * 109.50352 * 65.31228 * 15 14 5
39 39 H 1.08996 * 109.47085 * 64.99662 * 18 16 2
40 40 H 1.09007 * 109.46765 * 304.99727 * 18 16 2
41 41 H 0.96993 * 120.00251 * 359.97438 * 19 18 16
42 42 H 0.96995 * 119.99939 * 0.02562 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8939 1.0274 0.0000
4 6 2.0419 -0.7237 1.2495
5 7 3.5052 -0.8285 1.1690
6 6 4.2817 -0.3855 2.1776
7 8 3.7820 0.2106 3.1140
8 6 5.7258 -0.6211 2.1470
9 6 6.6742 0.1961 2.6970
10 6 7.9564 -0.2641 2.5219
11 6 8.0579 -1.4217 1.8507
12 9 9.2232 -2.0457 1.5715
13 16 6.5175 -2.0040 1.4041
14 6 4.1058 -1.4256 -0.0314
15 6 3.5709 -0.6941 -1.2665
16 6 2.0408 -0.7228 -1.2484
17 1 1.6973 -1.7572 -1.2353
18 6 1.5031 -0.0230 -2.4984
19 7 1.8925 -0.7827 -3.6890
20 6 1.5214 -0.3447 -4.9322
21 1 0.9414 0.5605 -5.0351
22 6 1.8908 -1.0642 -6.0603
23 7 2.5981 -2.1672 -5.9351
24 14 1.3841 -0.4672 -7.7563
25 1 2.4304 0.4380 -8.2955
26 1 1.2219 -1.6319 -8.6631
27 1 0.0969 0.2668 -7.6585
28 1 -0.3634 -1.0276 0.0005
29 1 -0.3633 0.5149 0.8893
30 1 -0.3633 0.5129 -0.8905
31 1 1.7644 -0.1581 2.1388
32 1 1.6043 -1.7207 1.2992
33 1 6.4384 1.1126 3.2174
34 1 8.8192 0.2665 2.8969
35 1 5.1901 -1.3231 0.0128
36 1 3.8406 -2.4815 -0.0862
37 1 3.9334 -1.1885 -2.1678
38 1 3.9154 0.3399 -1.2546
39 1 1.9174 0.9834 -2.5579
40 1 0.4159 0.0342 -2.4434
41 1 2.4137 -1.5955 -3.5967
42 1 2.8609 -2.4774 -5.0545
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001185787189.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 16:28:17
Heat of formation + Delta-G solvation = -51.819704 kcal
Electronic energy + Delta-G solvation = -25463.899717 eV
Core-core repulsion = 21677.687478 eV
Total energy + Delta-G solvation = -3786.212239 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 326.121 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-50.20732 -41.56126 -39.58578 -38.38337 -36.84745 -35.27072 -33.55857 -31.96133
-30.82118 -28.28738 -27.86533 -25.96446 -25.33028 -24.07959 -23.06141 -22.31077
-21.00462 -20.56655 -19.52241 -19.27358 -18.09893 -17.65678 -17.15359 -16.94893
-16.74242 -16.29312 -16.00395 -15.63084 -15.60304 -15.47241 -15.31312 -14.65682
-14.59778 -14.28691 -14.23032 -13.95671 -13.52988 -13.25920 -13.14946 -12.96337
-12.83528 -12.70070 -12.56797 -12.16033 -12.09295 -11.89018 -11.78722 -11.63639
-11.44006 -11.22947 -11.12588 -10.88829 -10.00714 -9.72305 -9.69322 -9.06340
-8.37612 -5.30848 -0.80853 -0.15341 0.41907 1.10926 1.59528 1.67062
1.69418 1.83854 1.95730 2.71855 3.17582 3.28090 3.41203 3.58395
3.60297 3.74473 3.86966 4.06815 4.12079 4.14669 4.22834 4.26362
4.41368 4.51503 4.59841 4.62768 4.67758 4.71357 4.74554 4.83675
4.90842 5.00728 5.03077 5.08507 5.14285 5.18403 5.27258 5.38830
5.50653 5.61137 6.12908 6.53353 6.84749 7.12808 8.03513 8.14032
9.14855
Molecular weight = 326.12amu
Principal moments of inertia in cm(-1)
A = 0.013698 B = 0.003226 C = 0.002718
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2043.614780 B = 8677.909267 C =10298.778683
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.088 4.088
3 H 0.065 0.935
4 C 0.122 3.878
5 N -0.602 5.602
6 C 0.593 3.407
7 O -0.561 6.561
8 C -0.287 4.287
9 C -0.032 4.032
10 C -0.177 4.177
11 C -0.047 4.047
12 F -0.104 7.104
13 S 0.271 5.729
14 C 0.099 3.901
15 C -0.117 4.117
16 C -0.080 4.080
17 H 0.074 0.926
18 C 0.162 3.838
19 N -0.753 5.753
20 C -0.335 4.335
21 H 0.061 0.939
22 C -0.100 4.100
23 N -0.974 5.974
24 Si 1.127 2.873
25 H -0.286 1.286
26 H -0.292 1.292
27 H -0.276 1.276
28 H 0.063 0.937
29 H 0.072 0.928
30 H 0.054 0.946
31 H 0.092 0.908
32 H 0.088 0.912
33 H 0.172 0.828
34 H 0.180 0.820
35 H 0.095 0.905
36 H 0.095 0.905
37 H 0.068 0.932
38 H 0.058 0.942
39 H 0.008 0.992
40 H 0.027 0.973
41 H 0.363 0.637
42 H 0.246 0.754
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.314 1.520 19.925 21.280
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.107 4.107
3 H 0.084 0.916
4 C 0.000 4.000
5 N -0.333 5.333
6 C 0.382 3.618
7 O -0.442 6.442
8 C -0.408 4.408
9 C -0.065 4.065
10 C -0.209 4.209
11 C -0.184 4.184
12 F -0.083 7.083
13 S 0.537 5.463
14 C -0.025 4.025
15 C -0.155 4.155
16 C -0.099 4.099
17 H 0.092 0.908
18 C 0.036 3.964
19 N -0.398 5.398
20 C -0.467 4.467
21 H 0.079 0.921
22 C -0.292 4.292
23 N -0.622 5.622
24 Si 0.952 3.048
25 H -0.213 1.213
26 H -0.218 1.218
27 H -0.201 1.201
28 H 0.082 0.918
29 H 0.091 0.909
30 H 0.073 0.927
31 H 0.111 0.889
32 H 0.106 0.894
33 H 0.189 0.811
34 H 0.197 0.803
35 H 0.113 0.887
36 H 0.113 0.887
37 H 0.087 0.913
38 H 0.077 0.923
39 H 0.026 0.974
40 H 0.044 0.956
41 H 0.196 0.804
42 H 0.056 0.944
Dipole moment (debyes) X Y Z Total
from point charges 6.552 0.400 18.006 19.165
hybrid contribution 1.070 1.233 2.048 2.619
sum 7.622 1.632 20.054 21.516
Atomic orbital electron populations
1.21797 0.93163 1.02765 1.02416 1.21358 0.97051 0.99252 0.93084
0.91609 1.21786 0.77535 1.01981 0.98687 1.48042 1.07598 1.60179
1.17527 1.17052 0.84711 0.78063 0.81986 1.90812 1.74629 1.42849
1.35948 1.24403 0.97296 1.04295 1.14800 1.20635 0.89733 1.00193
0.95938 1.20477 1.00230 0.96551 1.03673 1.22557 0.88567 0.99163
1.08125 1.91531 1.43822 1.81111 1.91869 1.83733 0.91628 1.21084
1.49815 1.22239 0.98522 0.98408 0.83299 1.21785 0.95636 1.00907
0.97192 1.21259 0.94905 0.99974 0.93732 0.90789 1.20814 0.96780
0.93391 0.85394 1.42552 1.65921 1.29039 1.02302 1.20385 1.31024
1.08467 0.86780 0.92072 1.27086 0.99634 0.96475 1.05989 1.70962
1.41967 1.24560 1.24683 0.82620 0.76013 0.74811 0.71330 1.21277
1.21847 1.20097 0.91801 0.90922 0.92733 0.88921 0.89362 0.81108
0.80258 0.88740 0.88732 0.91294 0.92310 0.97440 0.95552 0.80433
0.94361
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.11 8.82 71.98 0.63 -2.47 16
2 C -0.09 -2.10 2.41 -10.72 -0.03 -2.12 16
3 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16
4 C 0.12 2.64 5.73 86.36 0.49 3.14 16
5 N -0.60 -13.83 2.97 -824.00 -2.45 -16.28 16
6 C 0.59 14.92 7.57 86.35 0.65 15.58 16
7 O -0.56 -17.29 16.40 -4.44 -0.07 -17.37 16
8 C -0.29 -5.94 5.72 24.03 0.14 -5.80 16
9 C -0.03 -0.57 10.13 21.71 0.22 -0.35 16
10 C -0.18 -2.73 10.16 21.14 0.21 -2.51 16
11 C -0.05 -0.83 8.10 66.90 0.54 -0.29 16
12 F -0.10 -2.00 17.32 44.97 0.78 -1.22 16
13 S 0.27 4.65 19.34 -56.49 -1.09 3.56 16
14 C 0.10 2.14 5.51 86.36 0.48 2.61 16
15 C -0.12 -3.24 5.25 30.67 0.16 -3.08 16
16 C -0.08 -2.32 1.73 -10.76 -0.02 -2.34 16
17 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16
18 C 0.16 6.29 5.41 86.38 0.47 6.76 16
19 N -0.75 -36.97 5.32 -343.43 -1.83 -38.79 16
20 C -0.34 -18.74 9.99 84.03 0.84 -17.90 16
21 H 0.06 3.39 7.83 -2.91 -0.02 3.36 16
22 C -0.10 -5.74 5.50 84.86 0.47 -5.28 16
23 N -0.97 -59.60 13.70 21.65 0.30 -59.30 16
24 Si 1.13 51.57 29.92 68.60 2.05 53.62 16
25 H -0.29 -12.53 7.11 99.48 0.71 -11.83 16
26 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16
27 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16
28 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16
29 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16
30 H 0.05 1.34 6.29 -2.39 -0.02 1.33 16
31 H 0.09 2.11 7.00 -2.39 -0.02 2.09 16
32 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16
33 H 0.17 2.60 8.06 -2.91 -0.02 2.58 16
34 H 0.18 1.86 8.06 -2.91 -0.02 1.83 16
35 H 0.10 1.87 4.00 -18.62 -0.07 1.79 16
36 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16
37 H 0.07 2.20 7.15 -2.39 -0.02 2.18 16
38 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16
39 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16
40 H 0.03 1.04 6.14 -2.38 -0.01 1.02 16
41 H 0.36 18.07 5.68 -92.71 -0.53 17.55 16
42 H 0.25 14.84 6.77 -92.71 -0.63 14.21 16
Total: -1.00 -69.15 350.43 3.56 -65.60
By element:
Atomic # 1 Polarization: 23.63 SS G_CDS: 0.60 Total: 24.24 kcal
Atomic # 6 Polarization: -19.31 SS G_CDS: 5.26 Total: -14.05 kcal
Atomic # 7 Polarization: -110.39 SS G_CDS: -3.98 Total: -114.37 kcal
Atomic # 8 Polarization: -17.29 SS G_CDS: -0.07 Total: -17.37 kcal
Atomic # 9 Polarization: -2.00 SS G_CDS: 0.78 Total: -1.22 kcal
Atomic # 14 Polarization: 51.57 SS G_CDS: 2.05 Total: 53.62 kcal
Atomic # 16 Polarization: 4.65 SS G_CDS: -1.09 Total: 3.56 kcal
Total: -69.15 3.56 -65.60 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001185787189.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 13.776 kcal
(2) G-P(sol) polarization free energy of solvation -69.151 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.375 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.555 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.595 kcal
(6) G-S(sol) free energy of system = (1) + (5) -51.820 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds