Wall clock time and date at job start Tue Mar 31 2020 16:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35897 * 116.99890 * 2 1 4 4 C 1.38748 * 120.05703 * 0.02705 * 3 2 1 5 5 C 1.38123 * 119.94538 * 179.97438 * 4 3 2 6 6 C 1.38287 * 120.05544 * 0.02562 * 5 4 3 7 7 C 1.38246 * 120.11133 * 359.74503 * 6 5 4 8 8 C 1.38165 * 120.05248 * 0.50818 * 7 6 5 9 9 C 1.50695 * 120.02615 * 179.77013 * 8 7 6 10 10 H 1.09005 * 109.47376 * 214.72320 * 9 8 7 11 11 C 1.53003 * 109.47503 * 94.72346 * 9 8 7 12 12 O 1.42906 * 109.47248 * 334.72293 * 9 8 7 13 13 C 1.35634 * 116.99992 * 204.86411 * 12 9 8 14 14 C 1.38662 * 120.16368 * 354.57705 * 13 12 9 15 15 C 1.38088 * 120.09631 * 180.02562 * 14 13 12 16 16 C 1.38694 * 120.41309 * 359.97438 * 15 14 13 17 17 C 1.37695 * 120.32150 * 359.97438 * 16 15 14 18 18 C 1.39844 * 119.90278 * 0.29718 * 17 16 15 19 19 C 1.47530 * 120.20716 * 179.72060 * 18 17 16 20 20 O 1.21811 * 120.00311 * 179.97438 * 19 18 17 21 21 C 1.41836 * 120.00102 * 0.02562 * 19 18 17 22 22 H 1.08002 * 119.99400 * 359.97438 * 21 19 18 23 23 C 1.40322 * 119.99933 * 179.97438 * 21 19 18 24 24 N 1.30533 * 120.00122 * 359.97438 * 23 21 19 25 25 Si 1.86801 * 119.99485 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47052 * 60.00419 * 25 23 21 27 27 H 1.48511 * 109.46833 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.47296 * 299.99947 * 25 23 21 29 29 H 1.08995 * 109.46842 * 299.99618 * 1 2 3 30 30 H 1.08994 * 109.46889 * 59.99511 * 1 2 3 31 31 H 1.09005 * 109.46483 * 179.97438 * 1 2 3 32 32 H 1.08009 * 120.02965 * 359.95486 * 4 3 2 33 33 H 1.07999 * 119.97034 * 179.97438 * 5 4 3 34 34 H 1.07995 * 119.94206 * 180.02562 * 6 5 4 35 35 H 1.07995 * 119.96977 * 180.25711 * 7 6 5 36 36 H 1.08998 * 109.46728 * 59.99677 * 11 9 8 37 37 H 1.09002 * 109.47410 * 180.02562 * 11 9 8 38 38 H 1.09005 * 109.46783 * 300.00337 * 11 9 8 39 39 H 1.08007 * 119.95668 * 359.97438 * 14 13 12 40 40 H 1.07996 * 119.79796 * 180.02562 * 15 14 13 41 41 H 1.08000 * 119.83468 * 180.02562 * 16 15 14 42 42 H 1.08008 * 120.05167 * 180.02562 * 17 16 15 43 43 H 0.97005 * 119.99756 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3752 0.0006 5 6 1.9209 3.6047 0.0011 6 6 3.3019 3.6758 0.0005 7 6 4.0560 2.5171 0.0048 8 6 3.4311 1.2848 -0.0011 9 6 4.2537 0.0222 -0.0017 10 1 3.7465 -0.7417 -0.5911 11 6 4.4274 -0.4742 1.4351 12 8 5.5366 0.2897 -0.5716 13 6 6.1961 -0.7591 -1.1235 14 6 5.6769 -2.0408 -1.0204 15 6 6.3498 -3.1077 -1.5824 16 6 7.5470 -2.9079 -2.2534 17 6 8.0776 -1.6424 -2.3669 18 6 7.4102 -0.5531 -1.7979 19 6 7.9757 0.8049 -1.9102 20 8 7.3911 1.7511 -1.4136 21 6 9.1997 1.0089 -2.5973 22 1 9.7178 0.1700 -3.0379 23 6 9.7372 2.3006 -2.7045 24 7 9.1107 3.3146 -2.1723 25 14 11.3496 2.5691 -3.6088 26 1 11.2074 2.1216 -5.0176 27 1 11.6989 4.0122 -3.5801 28 1 12.4245 1.7869 -2.9470 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3632 -1.0278 -0.0005 32 1 0.2128 2.3203 0.0003 33 1 1.3340 4.5113 0.0011 34 1 3.7922 4.6380 0.0014 35 1 5.1344 2.5752 0.0085 36 1 3.4489 -0.6782 1.8698 37 1 5.0228 -1.3872 1.4347 38 1 4.9346 0.2897 2.0246 39 1 4.7454 -2.2050 -0.4992 40 1 5.9408 -4.1038 -1.4996 41 1 8.0652 -3.7490 -2.6898 42 1 9.0100 -1.4917 -2.8908 43 1 9.4825 4.2075 -2.2461 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233522194.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:21 Heat of formation + Delta-G solvation = -59.772619 kcal Electronic energy + Delta-G solvation = -27529.917321 eV Core-core repulsion = 23699.083820 eV Total energy + Delta-G solvation = -3830.833501 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.135 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.36658 -39.39552 -37.49221 -36.77509 -35.91197 -32.85519 -32.46363 -30.53057 -29.98102 -29.19336 -28.92505 -27.27588 -26.60689 -23.87162 -22.84699 -22.19285 -21.70310 -20.20928 -19.67013 -17.92321 -17.44534 -16.49339 -16.09924 -15.85698 -15.77230 -15.30849 -14.73377 -14.68060 -14.45223 -14.22948 -13.87324 -13.49302 -13.41830 -13.24155 -12.80980 -12.57408 -12.48203 -12.18325 -12.10031 -11.85163 -11.56431 -11.41032 -11.34279 -11.17501 -11.08501 -11.00725 -10.82556 -10.60417 -10.41501 -10.34480 -10.11844 -10.02734 -8.88880 -8.63872 -8.12680 -8.03437 -7.35902 -7.29552 -6.18134 -4.78099 1.49521 1.62750 1.88055 2.15067 3.12083 3.17068 3.19055 3.26281 3.76169 3.97878 4.07498 4.15227 4.72581 4.78733 4.92487 5.01393 5.03305 5.23265 5.26696 5.32328 5.41829 5.46872 5.48787 5.53949 5.62501 5.70523 5.87611 5.93454 5.96930 6.01030 6.03782 6.23018 6.25688 6.34984 6.41348 6.47009 6.64979 6.77607 6.83284 7.01765 7.02748 7.09534 7.22908 7.35233 7.43574 7.56203 8.12600 8.23380 8.89891 8.95688 10.43267 10.67076 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.012590 B = 0.004174 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.474333 B = 6707.009335 C = 8557.271727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.317 6.317 3 C 0.129 3.871 4 C -0.217 4.217 5 C -0.084 4.084 6 C -0.156 4.156 7 C -0.041 4.041 8 C -0.113 4.113 9 C 0.126 3.874 10 H 0.078 0.922 11 C -0.168 4.168 12 O -0.262 6.262 13 C 0.154 3.846 14 C -0.230 4.230 15 C -0.093 4.093 16 C -0.177 4.177 17 C -0.059 4.059 18 C -0.137 4.137 19 C 0.393 3.607 20 O -0.518 6.518 21 C -0.522 4.522 22 H 0.071 0.929 23 C 0.082 3.918 24 N -0.738 5.738 25 Si 0.903 3.097 26 H -0.266 1.266 27 H -0.279 1.279 28 H -0.266 1.266 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.097 0.903 32 H 0.124 0.876 33 H 0.121 0.879 34 H 0.125 0.875 35 H 0.155 0.845 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.121 0.879 40 H 0.112 0.888 41 H 0.113 0.887 42 H 0.134 0.866 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.656 -5.706 4.287 15.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.231 6.231 3 C 0.084 3.916 4 C -0.236 4.236 5 C -0.102 4.102 6 C -0.174 4.174 7 C -0.059 4.059 8 C -0.114 4.114 9 C 0.069 3.931 10 H 0.096 0.904 11 C -0.225 4.225 12 O -0.174 6.174 13 C 0.107 3.893 14 C -0.248 4.248 15 C -0.111 4.111 16 C -0.195 4.195 17 C -0.078 4.078 18 C -0.139 4.139 19 C 0.287 3.713 20 O -0.405 6.405 21 C -0.554 4.554 22 H 0.089 0.911 23 C -0.140 4.140 24 N -0.367 5.367 25 Si 0.727 3.273 26 H -0.190 1.190 27 H -0.204 1.204 28 H -0.190 1.190 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.115 0.885 32 H 0.142 0.858 33 H 0.139 0.861 34 H 0.143 0.857 35 H 0.172 0.828 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.139 0.861 40 H 0.130 0.870 41 H 0.131 0.869 42 H 0.151 0.849 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.868 -5.053 4.615 15.465 hybrid contribution 0.364 -0.146 -0.543 0.670 sum -13.504 -5.199 4.072 15.033 Atomic orbital electron populations 1.23010 0.78804 1.03627 1.01197 1.86060 1.21023 1.27072 1.88931 1.18680 0.91147 0.84223 0.97522 1.21034 0.99438 0.92271 1.10819 1.20930 0.94798 0.96681 0.97831 1.21165 0.93580 0.98926 1.03706 1.21309 1.02230 0.90163 0.92214 1.18963 0.89560 0.95399 1.07448 1.20844 0.83469 0.94299 0.94491 0.90396 1.22285 1.02261 1.01979 0.95973 1.86445 1.29156 1.31787 1.69975 1.19372 0.91975 0.85848 0.92064 1.21150 1.02645 0.92620 1.08417 1.20805 0.95235 0.97518 0.97549 1.20934 0.97542 0.97176 1.03895 1.21389 0.99038 0.90977 0.96368 1.21540 0.93334 1.00169 0.98888 1.17946 0.86732 0.84189 0.82459 1.90506 1.61633 1.41872 1.46515 1.20869 1.07257 0.93692 1.33576 0.91129 1.25925 0.98049 0.95822 0.94233 1.69951 1.35484 0.99752 1.31508 0.86502 0.82299 0.77875 0.80642 1.19028 1.20393 1.19020 0.92821 0.92794 0.88474 0.85767 0.86126 0.85670 0.82759 0.91450 0.91733 0.91436 0.86119 0.86998 0.86870 0.84866 0.91689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.32 -4.25 9.63 -19.42 -0.19 -4.44 16 3 C 0.13 1.95 6.66 -39.22 -0.26 1.69 16 4 C -0.22 -2.84 9.04 -39.44 -0.36 -3.20 16 5 C -0.08 -1.12 10.04 -39.61 -0.40 -1.52 16 6 C -0.16 -2.44 10.04 -39.56 -0.40 -2.84 16 7 C -0.04 -0.77 9.35 -39.61 -0.37 -1.14 16 8 C -0.11 -1.99 5.08 -104.48 -0.53 -2.52 16 9 C 0.13 2.27 2.16 -27.88 -0.06 2.21 16 10 H 0.08 1.36 5.87 -51.93 -0.30 1.06 16 11 C -0.17 -2.60 9.15 37.16 0.34 -2.26 16 12 O -0.26 -5.93 6.73 -40.43 -0.27 -6.20 16 13 C 0.15 3.44 6.62 -38.61 -0.26 3.19 16 14 C -0.23 -4.21 8.23 -39.48 -0.32 -4.54 16 15 C -0.09 -1.54 10.04 -39.47 -0.40 -1.94 16 16 C -0.18 -3.07 10.02 -39.61 -0.40 -3.47 16 17 C -0.06 -1.23 9.43 -39.18 -0.37 -1.60 16 18 C -0.14 -3.36 5.90 -104.69 -0.62 -3.97 16 19 C 0.39 11.30 6.91 -34.42 -0.24 11.07 16 20 O -0.52 -16.29 13.71 -16.74 -0.23 -16.52 16 21 C -0.52 -14.51 8.86 -37.42 -0.33 -14.85 16 22 H 0.07 1.78 6.02 -52.49 -0.32 1.46 16 23 C 0.08 2.23 5.50 -17.32 -0.10 2.13 16 24 N -0.74 -21.26 11.73 55.56 0.65 -20.61 16 25 Si 0.90 19.50 29.56 -169.99 -5.03 14.48 16 26 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 27 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 28 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 29 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 30 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 31 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.12 1.25 6.30 -52.48 -0.33 0.92 16 33 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 34 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 35 H 0.15 3.38 7.36 -52.49 -0.39 2.99 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.97 6.90 -51.93 -0.36 0.61 16 38 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.12 1.93 5.42 -52.48 -0.28 1.65 16 40 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 41 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 42 H 0.13 2.63 6.20 -52.48 -0.33 2.31 16 43 H 0.27 7.09 8.29 -40.82 -0.34 6.75 16 LS Contribution 359.88 15.07 5.42 5.42 Total: -1.00 -33.59 359.88 -8.90 -42.49 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -5.20 Total: 7.67 kcal Atomic # 6 Polarization: -18.23 SS G_CDS: -4.07 Total: -22.30 kcal Atomic # 7 Polarization: -21.26 SS G_CDS: 0.65 Total: -20.61 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -0.69 Total: -27.15 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.03 Total: 14.48 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.59 -8.90 -42.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233522194.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.280 kcal (2) G-P(sol) polarization free energy of solvation -33.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds