Wall clock time and date at job start Tue Mar 31 2020 16:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35897 * 116.99890 * 2 1 4 4 C 1.38748 * 120.05703 * 0.02705 * 3 2 1 5 5 C 1.38123 * 119.94538 * 179.97438 * 4 3 2 6 6 C 1.38287 * 120.05544 * 0.02562 * 5 4 3 7 7 C 1.38246 * 120.11133 * 359.74503 * 6 5 4 8 8 C 1.38165 * 120.05248 * 0.50818 * 7 6 5 9 9 C 1.50695 * 120.02615 * 179.77013 * 8 7 6 10 10 H 1.09005 * 109.47376 * 214.72320 * 9 8 7 11 11 C 1.53003 * 109.47503 * 94.72346 * 9 8 7 12 12 O 1.42906 * 109.47248 * 334.72293 * 9 8 7 13 13 C 1.35634 * 116.99992 * 204.86411 * 12 9 8 14 14 C 1.38662 * 120.16368 * 354.57705 * 13 12 9 15 15 C 1.38088 * 120.09631 * 180.02562 * 14 13 12 16 16 C 1.38694 * 120.41309 * 359.97438 * 15 14 13 17 17 C 1.37695 * 120.32150 * 359.97438 * 16 15 14 18 18 C 1.39844 * 119.90278 * 0.29718 * 17 16 15 19 19 C 1.47530 * 120.20716 * 179.72060 * 18 17 16 20 20 O 1.21811 * 120.00311 * 179.97438 * 19 18 17 21 21 C 1.41836 * 120.00102 * 0.02562 * 19 18 17 22 22 H 1.08002 * 119.99400 * 359.97438 * 21 19 18 23 23 C 1.40322 * 119.99933 * 179.97438 * 21 19 18 24 24 N 1.30533 * 120.00122 * 359.97438 * 23 21 19 25 25 Si 1.86801 * 119.99485 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47052 * 60.00419 * 25 23 21 27 27 H 1.48511 * 109.46833 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.47296 * 299.99947 * 25 23 21 29 29 H 1.08995 * 109.46842 * 299.99618 * 1 2 3 30 30 H 1.08994 * 109.46889 * 59.99511 * 1 2 3 31 31 H 1.09005 * 109.46483 * 179.97438 * 1 2 3 32 32 H 1.08009 * 120.02965 * 359.95486 * 4 3 2 33 33 H 1.07999 * 119.97034 * 179.97438 * 5 4 3 34 34 H 1.07995 * 119.94206 * 180.02562 * 6 5 4 35 35 H 1.07995 * 119.96977 * 180.25711 * 7 6 5 36 36 H 1.08998 * 109.46728 * 59.99677 * 11 9 8 37 37 H 1.09002 * 109.47410 * 180.02562 * 11 9 8 38 38 H 1.09005 * 109.46783 * 300.00337 * 11 9 8 39 39 H 1.08007 * 119.95668 * 359.97438 * 14 13 12 40 40 H 1.07996 * 119.79796 * 180.02562 * 15 14 13 41 41 H 1.08000 * 119.83468 * 180.02562 * 16 15 14 42 42 H 1.08008 * 120.05167 * 180.02562 * 17 16 15 43 43 H 0.97005 * 119.99756 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3752 0.0006 5 6 1.9209 3.6047 0.0011 6 6 3.3019 3.6758 0.0005 7 6 4.0560 2.5171 0.0048 8 6 3.4311 1.2848 -0.0011 9 6 4.2537 0.0222 -0.0017 10 1 3.7465 -0.7417 -0.5911 11 6 4.4274 -0.4742 1.4351 12 8 5.5366 0.2897 -0.5716 13 6 6.1961 -0.7591 -1.1235 14 6 5.6769 -2.0408 -1.0204 15 6 6.3498 -3.1077 -1.5824 16 6 7.5470 -2.9079 -2.2534 17 6 8.0776 -1.6424 -2.3669 18 6 7.4102 -0.5531 -1.7979 19 6 7.9757 0.8049 -1.9102 20 8 7.3911 1.7511 -1.4136 21 6 9.1997 1.0089 -2.5973 22 1 9.7178 0.1700 -3.0379 23 6 9.7372 2.3006 -2.7045 24 7 9.1107 3.3146 -2.1723 25 14 11.3496 2.5691 -3.6088 26 1 11.2074 2.1216 -5.0176 27 1 11.6989 4.0122 -3.5801 28 1 12.4245 1.7869 -2.9470 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3632 -1.0278 -0.0005 32 1 0.2128 2.3203 0.0003 33 1 1.3340 4.5113 0.0011 34 1 3.7922 4.6380 0.0014 35 1 5.1344 2.5752 0.0085 36 1 3.4489 -0.6782 1.8698 37 1 5.0228 -1.3872 1.4347 38 1 4.9346 0.2897 2.0246 39 1 4.7454 -2.2050 -0.4992 40 1 5.9408 -4.1038 -1.4996 41 1 8.0652 -3.7490 -2.6898 42 1 9.0100 -1.4917 -2.8908 43 1 9.4825 4.2075 -2.2461 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233522194.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:20 Heat of formation + Delta-G solvation = -79.038192 kcal Electronic energy + Delta-G solvation = -27530.752739 eV Core-core repulsion = 23699.083820 eV Total energy + Delta-G solvation = -3831.668919 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.135 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.62295 -40.79721 -38.89046 -38.20149 -37.74708 -34.71176 -34.04261 -32.16853 -31.16353 -30.54806 -30.29811 -28.64484 -28.08497 -25.18162 -24.54300 -23.52583 -22.97312 -21.57201 -21.47138 -19.05383 -18.93259 -18.40458 -17.43706 -17.29382 -16.84885 -16.70601 -16.17391 -16.06005 -16.05516 -15.50518 -15.18239 -14.99511 -14.95728 -14.51027 -14.31923 -14.26896 -13.85766 -13.69714 -13.28662 -13.22466 -13.09819 -12.90346 -12.70641 -12.66051 -12.61583 -12.38513 -12.09528 -12.03311 -12.00667 -11.90873 -11.67963 -11.53544 -10.93048 -9.86523 -9.70990 -9.42039 -9.17795 -8.94868 -8.23956 -6.97452 0.27516 0.30610 0.42689 0.63017 1.37210 1.41121 1.52270 2.23148 2.31913 2.32684 2.36536 2.75469 2.94148 3.59272 3.83928 3.87891 3.93104 4.00363 4.06353 4.11688 4.16251 4.28374 4.33873 4.43132 4.43747 4.49788 4.55806 4.57843 4.68636 4.73128 4.75580 4.79482 4.90345 5.01860 5.11342 5.18794 5.25576 5.28182 5.42459 5.45629 5.56692 5.62578 5.72992 5.82867 5.99226 6.10154 6.40980 6.68715 6.77570 6.93935 8.37631 8.59492 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.012590 B = 0.004174 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.474333 B = 6707.009335 C = 8557.271727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.330 6.330 3 C 0.132 3.868 4 C -0.206 4.206 5 C -0.073 4.073 6 C -0.170 4.170 7 C -0.073 4.073 8 C -0.138 4.138 9 C 0.122 3.878 10 H 0.084 0.916 11 C -0.157 4.157 12 O -0.299 6.299 13 C 0.132 3.868 14 C -0.227 4.227 15 C -0.072 4.072 16 C -0.168 4.168 17 C -0.064 4.064 18 C -0.194 4.194 19 C 0.367 3.633 20 O -0.567 6.567 21 C -0.553 4.553 22 H 0.090 0.910 23 C 0.025 3.975 24 N -0.791 5.791 25 Si 0.992 3.008 26 H -0.252 1.252 27 H -0.271 1.271 28 H -0.252 1.252 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.120 0.880 32 H 0.166 0.834 33 H 0.161 0.839 34 H 0.128 0.872 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.069 0.931 38 H 0.048 0.952 39 H 0.146 0.854 40 H 0.164 0.836 41 H 0.157 0.843 42 H 0.133 0.867 43 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.662 -8.509 3.643 18.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.244 6.244 3 C 0.086 3.914 4 C -0.224 4.224 5 C -0.090 4.090 6 C -0.188 4.188 7 C -0.092 4.092 8 C -0.139 4.139 9 C 0.066 3.934 10 H 0.102 0.898 11 C -0.214 4.214 12 O -0.212 6.212 13 C 0.086 3.914 14 C -0.245 4.245 15 C -0.089 4.089 16 C -0.186 4.186 17 C -0.082 4.082 18 C -0.196 4.196 19 C 0.264 3.736 20 O -0.458 6.458 21 C -0.584 4.584 22 H 0.108 0.892 23 C -0.193 4.193 24 N -0.420 5.420 25 Si 0.811 3.189 26 H -0.176 1.176 27 H -0.195 1.195 28 H -0.176 1.176 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.139 0.861 32 H 0.184 0.816 33 H 0.179 0.821 34 H 0.146 0.854 35 H 0.118 0.882 36 H 0.111 0.889 37 H 0.088 0.912 38 H 0.067 0.933 39 H 0.163 0.837 40 H 0.181 0.819 41 H 0.175 0.825 42 H 0.151 0.849 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.885 -7.893 3.971 18.177 hybrid contribution 0.804 0.607 -0.307 1.053 sum -15.081 -7.286 3.664 17.145 Atomic orbital electron populations 1.23407 0.76057 1.05772 1.02518 1.86040 1.23769 1.26091 1.88534 1.18670 0.90190 0.85811 0.96687 1.21505 1.01341 0.91135 1.08448 1.21323 0.93463 0.98626 0.95634 1.21281 0.95180 0.97929 1.04452 1.20951 0.99952 0.92496 0.95786 1.19025 0.91226 0.94561 1.09111 1.21083 0.81921 0.94969 0.95409 0.89813 1.22201 1.03449 1.01305 0.94414 1.86433 1.31084 1.33212 1.70441 1.19666 0.91888 0.87483 0.92407 1.21445 1.03518 0.91258 1.08314 1.21421 0.94040 0.99047 0.94424 1.21362 0.97712 0.96605 1.02916 1.21484 0.99008 0.91662 0.96046 1.21278 0.95889 0.99088 1.03339 1.18704 0.87184 0.85977 0.81698 1.90464 1.62946 1.44041 1.48376 1.21381 1.07735 0.95121 1.34182 0.89204 1.27193 1.02518 0.94973 0.94655 1.70127 1.38052 1.00591 1.33248 0.85156 0.76256 0.78222 0.79281 1.17613 1.19527 1.17579 0.91074 0.91737 0.86142 0.81638 0.82146 0.85433 0.88208 0.88913 0.91238 0.93329 0.83695 0.81876 0.82520 0.84881 0.91163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.33 -8.13 9.63 -92.39 -0.89 -9.02 16 3 C 0.13 3.88 6.66 22.51 0.15 4.03 16 4 C -0.21 -4.88 9.04 22.36 0.20 -4.68 16 5 C -0.07 -1.83 10.04 22.25 0.22 -1.61 16 6 C -0.17 -5.71 10.04 22.28 0.22 -5.49 16 7 C -0.07 -3.07 9.35 22.25 0.21 -2.86 16 8 C -0.14 -5.19 5.08 -19.77 -0.10 -5.29 16 9 C 0.12 4.67 2.16 29.85 0.06 4.73 16 10 H 0.08 2.98 5.87 -2.38 -0.01 2.96 16 11 C -0.16 -5.03 9.15 71.98 0.66 -4.37 16 12 O -0.30 -14.86 6.73 -68.59 -0.46 -15.32 16 13 C 0.13 6.23 6.62 22.90 0.15 6.38 16 14 C -0.23 -8.08 8.23 22.34 0.18 -7.90 16 15 C -0.07 -2.11 10.04 22.34 0.22 -1.88 16 16 C -0.17 -5.33 10.02 22.25 0.22 -5.11 16 17 C -0.06 -2.67 9.43 22.53 0.21 -2.45 16 18 C -0.19 -10.10 5.90 -19.91 -0.12 -10.21 16 19 C 0.37 23.01 6.91 25.61 0.18 23.19 16 20 O -0.57 -39.64 13.71 16.17 0.22 -39.42 16 21 C -0.55 -32.65 8.86 23.67 0.21 -32.44 16 22 H 0.09 4.72 6.02 -2.91 -0.02 4.70 16 23 C 0.02 1.40 5.50 85.39 0.47 1.87 16 24 N -0.79 -48.96 11.73 21.88 0.26 -48.70 16 25 Si 0.99 41.27 29.56 68.60 2.03 43.30 16 26 H -0.25 -9.87 7.11 99.48 0.71 -9.16 16 27 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 28 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 29 H 0.07 0.74 7.66 -2.39 -0.02 0.72 16 30 H 0.06 0.76 7.66 -2.39 -0.02 0.74 16 31 H 0.12 1.08 8.14 -2.38 -0.02 1.06 16 32 H 0.17 2.52 6.30 -2.91 -0.02 2.50 16 33 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 34 H 0.13 4.01 8.06 -2.91 -0.02 3.99 16 35 H 0.10 5.19 7.36 -2.91 -0.02 5.17 16 36 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 37 H 0.07 2.10 6.90 -2.39 -0.02 2.09 16 38 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 39 H 0.15 4.36 5.42 -2.91 -0.02 4.34 16 40 H 0.16 3.23 8.06 -2.91 -0.02 3.21 16 41 H 0.16 3.63 8.06 -2.91 -0.02 3.61 16 42 H 0.13 5.35 6.20 -2.91 -0.02 5.34 16 43 H 0.28 15.49 8.29 -92.70 -0.77 14.73 16 Total: -1.00 -84.97 359.88 6.67 -78.29 By element: Atomic # 1 Polarization: 32.57 SS G_CDS: 1.04 Total: 33.61 kcal Atomic # 6 Polarization: -47.22 SS G_CDS: 4.48 Total: -42.74 kcal Atomic # 7 Polarization: -48.96 SS G_CDS: 0.26 Total: -48.70 kcal Atomic # 8 Polarization: -62.62 SS G_CDS: -1.13 Total: -63.75 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Total: -84.97 6.67 -78.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233522194.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.744 kcal (2) G-P(sol) polarization free energy of solvation -84.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds