Wall clock time and date at job start Tue Mar 31 2020 17:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47227 * 2 1 4 4 C 1.52998 * 109.46979 * 120.00471 * 2 1 3 5 5 O 1.42898 * 109.47172 * 55.00165 * 4 2 1 6 6 C 1.35905 * 116.99796 * 180.02562 * 5 4 2 7 7 C 1.38725 * 120.05583 * 359.71783 * 6 5 4 8 8 C 1.38155 * 119.94376 * 179.74865 * 7 6 5 9 9 C 1.38260 * 120.05109 * 0.51193 * 8 7 6 10 10 C 1.38270 * 120.11587 * 359.76370 * 9 8 7 11 11 C 1.38145 * 120.05358 * 359.97438 * 10 9 8 12 12 O 1.42898 * 109.47231 * 240.00425 * 2 1 3 13 13 C 1.35660 * 117.00268 * 84.76035 * 12 2 1 14 14 C 1.39161 * 119.91061 * 174.35370 * 13 12 2 15 15 C 1.37594 * 120.09493 * 179.72380 * 14 13 12 16 16 C 1.39950 * 119.90574 * 0.56646 * 15 14 13 17 17 C 1.47566 * 120.09436 * 179.68098 * 16 15 14 18 18 O 1.21819 * 119.99956 * 180.02562 * 17 16 15 19 19 C 1.41765 * 119.99882 * 0.02605 * 17 16 15 20 20 H 1.08000 * 120.00161 * 359.97438 * 19 17 16 21 21 C 1.40344 * 119.99728 * 179.97438 * 19 17 16 22 22 N 1.30534 * 120.00332 * 0.02562 * 21 19 17 23 23 Si 1.86805 * 119.99777 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47081 * 90.00168 * 23 21 19 25 25 H 1.48498 * 109.47211 * 210.00035 * 23 21 19 26 26 H 1.48505 * 109.47070 * 330.00283 * 23 21 19 27 27 C 1.39949 * 119.80991 * 359.70631 * 16 15 14 28 28 C 1.37590 * 119.90751 * 0.02562 * 27 16 15 29 29 H 1.08994 * 109.47165 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47004 * 299.99614 * 1 2 3 31 31 H 1.09000 * 109.47173 * 59.99634 * 1 2 3 32 32 H 1.09003 * 109.47091 * 175.00157 * 4 2 1 33 33 H 1.09002 * 109.46980 * 294.99687 * 4 2 1 34 34 H 1.08000 * 120.03132 * 0.02562 * 7 6 5 35 35 H 1.08000 * 119.97252 * 180.28125 * 8 7 6 36 36 H 1.08003 * 119.94331 * 179.74894 * 9 8 7 37 37 H 1.07991 * 119.97443 * 179.97438 * 10 9 8 38 38 H 1.07995 * 120.03080 * 179.97438 * 11 10 9 39 39 H 1.08002 * 119.94945 * 0.02562 * 14 13 12 40 40 H 1.07998 * 120.04610 * 180.25356 * 15 14 13 41 41 H 0.96996 * 119.99811 * 179.97438 * 22 21 19 42 42 H 1.08007 * 120.04294 * 179.97438 * 27 16 15 43 43 H 1.08001 * 119.95418 * 179.97438 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 8 1.4702 -2.0305 1.3092 6 6 1.8226 -2.8088 2.3661 7 6 2.7033 -2.3247 3.3225 8 6 3.0559 -3.1160 4.3987 9 6 2.5400 -4.3932 4.5174 10 6 1.6666 -4.8802 3.5625 11 6 1.3066 -4.0909 2.4874 12 8 2.0063 -0.6735 -1.1668 13 6 2.1076 0.0602 -2.3033 14 6 2.6743 -0.5013 -3.4436 15 6 2.7737 0.2376 -4.6001 16 6 2.3148 1.5595 -4.6251 17 6 2.4258 2.3580 -5.8611 18 8 2.0262 3.5086 -5.8809 19 6 2.9975 1.7860 -7.0255 20 1 3.3521 0.7661 -7.0079 21 6 3.1025 2.5453 -8.2011 22 7 2.6743 3.7782 -8.2223 23 14 3.8565 1.7919 -9.7353 24 1 2.7918 1.1451 -10.5436 25 1 4.5108 2.8556 -10.5388 26 1 4.8662 0.7761 -9.3429 27 6 1.7507 2.1221 -3.4745 28 6 1.6501 1.3744 -2.3239 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 3.1263 -0.7996 1.2055 33 1 1.7516 -0.1584 2.1369 34 1 3.1094 -1.3284 3.2282 35 1 3.7379 -2.7379 5.1458 36 1 2.8201 -5.0118 5.3572 37 1 1.2653 -5.8783 3.6573 38 1 0.6247 -4.4718 1.7416 39 1 3.0321 -1.5201 -3.4222 40 1 3.2099 -0.2003 -5.4857 41 1 2.7473 4.3031 -9.0348 42 1 1.3957 3.1420 -3.4895 43 1 1.2154 1.8079 -1.4353 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233524883.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:34 Heat of formation + Delta-G solvation = -66.821611 kcal Electronic energy + Delta-G solvation = -25689.159214 eV Core-core repulsion = 21858.020046 eV Total energy + Delta-G solvation = -3831.139168 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.135 amu Computer time = 9.88 seconds Orbital eigenvalues (eV) -40.54593 -39.77447 -37.97607 -37.30534 -35.72397 -32.85171 -32.63127 -31.29664 -30.54658 -29.92570 -29.31643 -27.23908 -26.56165 -23.58933 -22.79981 -22.53844 -22.21565 -20.59719 -19.60850 -18.76926 -17.82371 -16.86992 -16.34716 -16.15896 -16.05561 -15.53240 -15.20540 -15.02327 -14.71392 -14.37197 -14.06757 -13.75025 -13.66756 -13.34031 -13.18943 -12.86632 -12.77858 -12.57255 -12.39832 -12.09186 -11.89107 -11.77432 -11.65882 -11.34687 -11.27216 -11.18531 -11.10494 -10.98042 -10.55039 -10.36331 -10.34915 -9.93972 -9.31797 -8.98409 -8.48094 -8.43404 -7.49318 -7.47709 -6.31552 -4.91646 1.02654 1.15680 1.83628 1.99466 2.88314 3.04593 3.12397 3.15711 3.24505 3.49597 3.99865 4.01913 4.34362 4.54147 4.60141 4.62216 4.67267 4.79251 4.86560 4.90149 5.06965 5.11786 5.24060 5.31695 5.35767 5.39268 5.49409 5.68788 5.69242 5.80615 5.91200 5.98944 6.02390 6.08656 6.12564 6.14569 6.22386 6.31229 6.46922 6.63058 6.83878 7.03195 7.14301 7.23683 7.33687 7.37647 7.82703 8.02649 8.78103 8.83249 10.30057 10.52142 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.029686 B = 0.001985 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.970349 B =14103.302325 C =14646.209098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.086 3.914 3 H 0.093 0.907 4 C 0.066 3.934 5 O -0.300 6.300 6 C 0.134 3.866 7 C -0.212 4.212 8 C -0.081 4.081 9 C -0.164 4.164 10 C -0.081 4.081 11 C -0.153 4.153 12 O -0.306 6.306 13 C 0.111 3.889 14 C -0.163 4.163 15 C -0.056 4.056 16 C -0.136 4.136 17 C 0.389 3.611 18 O -0.545 6.545 19 C -0.517 4.517 20 H 0.074 0.926 21 C 0.079 3.921 22 N -0.735 5.735 23 Si 0.906 3.094 24 H -0.269 1.269 25 H -0.277 1.277 26 H -0.261 1.261 27 C -0.056 4.056 28 C -0.222 4.222 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.127 0.873 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.128 0.872 38 H 0.131 0.869 39 H 0.122 0.878 40 H 0.136 0.864 41 H 0.274 0.726 42 H 0.127 0.873 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.716 -13.009 22.413 25.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.030 3.970 3 H 0.111 0.889 4 C -0.009 4.009 5 O -0.213 6.213 6 C 0.088 3.912 7 C -0.231 4.231 8 C -0.099 4.099 9 C -0.182 4.182 10 C -0.099 4.099 11 C -0.172 4.172 12 O -0.220 6.220 13 C 0.067 3.933 14 C -0.182 4.182 15 C -0.075 4.075 16 C -0.138 4.138 17 C 0.285 3.715 18 O -0.435 6.435 19 C -0.548 4.548 20 H 0.093 0.907 21 C -0.144 4.144 22 N -0.364 5.364 23 Si 0.730 3.270 24 H -0.194 1.194 25 H -0.202 1.202 26 H -0.185 1.185 27 C -0.074 4.074 28 C -0.240 4.240 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.145 0.855 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.146 0.854 38 H 0.149 0.851 39 H 0.140 0.860 40 H 0.154 0.846 41 H 0.085 0.915 42 H 0.145 0.855 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.035 -12.518 22.221 25.525 hybrid contribution 0.489 -0.127 -0.484 0.699 sum -0.547 -12.645 21.738 25.154 Atomic orbital electron populations 1.22303 0.94311 1.04052 1.02906 1.22412 0.95446 0.95932 0.83252 0.88932 1.22952 0.98730 0.82112 0.97154 1.86172 1.66642 1.26033 1.42495 1.19092 0.93872 0.91266 0.86956 1.21294 1.02817 1.01801 0.97204 1.20954 0.98245 0.93921 0.96752 1.21058 1.00277 0.96452 1.00415 1.20982 0.96500 0.99244 0.93188 1.20491 1.03941 0.92204 1.00528 1.86085 1.81374 1.38180 1.16381 1.19127 0.97431 0.90457 0.86301 1.20356 1.05445 1.00858 0.91552 1.21403 0.96015 0.93479 0.96557 1.21822 0.98614 0.95265 0.98070 1.18069 0.81196 0.87025 0.85224 1.90498 1.48821 1.18874 1.85278 1.20943 1.37574 1.00115 0.96188 0.90748 1.26015 0.93800 0.94293 1.00305 1.69961 1.31148 1.07537 1.27738 0.86378 0.79915 0.79711 0.80989 1.19368 1.20168 1.18472 1.21183 0.95394 0.99572 0.91286 1.21104 1.08724 0.94359 0.99863 0.90636 0.91367 0.91184 0.90899 0.90151 0.85521 0.85888 0.86029 0.85432 0.85134 0.86004 0.84610 0.91502 0.85513 0.86233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.92 8.96 37.16 0.33 -1.58 16 2 C 0.09 0.98 2.63 -26.73 -0.07 0.91 16 3 H 0.09 0.95 6.30 -51.93 -0.33 0.63 16 4 C 0.07 0.63 4.61 37.16 0.17 0.80 16 5 O -0.30 -3.50 9.22 -24.30 -0.22 -3.72 16 6 C 0.13 1.42 6.69 -39.22 -0.26 1.16 16 7 C -0.21 -1.92 9.04 -39.43 -0.36 -2.27 16 8 C -0.08 -0.64 10.04 -39.60 -0.40 -1.03 16 9 C -0.16 -1.24 10.04 -39.56 -0.40 -1.64 16 10 C -0.08 -0.65 10.04 -39.60 -0.40 -1.04 16 11 C -0.15 -1.48 9.99 -39.43 -0.39 -1.88 16 12 O -0.31 -4.67 9.75 -23.54 -0.23 -4.90 16 13 C 0.11 1.92 6.62 -38.89 -0.26 1.66 16 14 C -0.16 -2.93 9.97 -39.47 -0.39 -3.33 16 15 C -0.06 -1.14 9.43 -39.18 -0.37 -1.51 16 16 C -0.14 -3.21 5.89 -104.81 -0.62 -3.83 16 17 C 0.39 11.02 6.91 -34.43 -0.24 10.78 16 18 O -0.54 -17.33 14.89 5.08 0.08 -17.25 16 19 C -0.52 -14.16 8.86 -37.44 -0.33 -14.49 16 20 H 0.07 1.84 6.01 -52.49 -0.32 1.52 16 21 C 0.08 2.12 5.50 -17.31 -0.10 2.03 16 22 N -0.74 -21.12 11.73 55.57 0.65 -20.47 16 23 Si 0.91 19.19 29.56 -169.99 -5.03 14.17 16 24 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 25 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 26 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 27 C -0.06 -1.18 9.59 -39.18 -0.38 -1.55 16 28 C -0.22 -3.84 8.21 -39.47 -0.32 -4.16 16 29 H 0.07 0.88 7.56 -51.93 -0.39 0.49 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.83 6.89 -51.93 -0.36 0.47 16 32 H 0.07 0.67 7.65 -51.93 -0.40 0.28 16 33 H 0.08 0.56 7.67 -51.93 -0.40 0.16 16 34 H 0.13 0.94 6.30 -52.49 -0.33 0.61 16 35 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 36 H 0.12 0.66 8.06 -52.48 -0.42 0.23 16 37 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 38 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 39 H 0.12 1.92 8.06 -52.49 -0.42 1.50 16 40 H 0.14 2.63 6.19 -52.49 -0.33 2.31 16 41 H 0.27 7.04 8.29 -40.82 -0.34 6.70 16 42 H 0.13 2.72 7.65 -52.48 -0.40 2.32 16 43 H 0.12 1.69 5.40 -52.49 -0.28 1.41 16 LS Contribution 363.83 15.07 5.48 5.48 Total: -1.00 -33.79 363.83 -9.24 -43.03 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -5.20 Total: 4.65 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: -4.77 Total: -20.98 kcal Atomic # 7 Polarization: -21.12 SS G_CDS: 0.65 Total: -20.47 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -0.38 Total: -25.87 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.03 Total: 14.17 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.79 -9.24 -43.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233524883.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.795 kcal (2) G-P(sol) polarization free energy of solvation -33.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.88 seconds