Wall clock time and date at job start Tue Mar 31 2020 17:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47227 * 2 1 4 4 C 1.52998 * 109.46979 * 120.00471 * 2 1 3 5 5 O 1.42898 * 109.47172 * 55.00165 * 4 2 1 6 6 C 1.35905 * 116.99796 * 180.02562 * 5 4 2 7 7 C 1.38725 * 120.05583 * 359.71783 * 6 5 4 8 8 C 1.38155 * 119.94376 * 179.74865 * 7 6 5 9 9 C 1.38260 * 120.05109 * 0.51193 * 8 7 6 10 10 C 1.38270 * 120.11587 * 359.76370 * 9 8 7 11 11 C 1.38145 * 120.05358 * 359.97438 * 10 9 8 12 12 O 1.42898 * 109.47231 * 240.00425 * 2 1 3 13 13 C 1.35660 * 117.00268 * 84.76035 * 12 2 1 14 14 C 1.39161 * 119.91061 * 174.35370 * 13 12 2 15 15 C 1.37594 * 120.09493 * 179.72380 * 14 13 12 16 16 C 1.39950 * 119.90574 * 0.56646 * 15 14 13 17 17 C 1.47566 * 120.09436 * 179.68098 * 16 15 14 18 18 O 1.21819 * 119.99956 * 180.02562 * 17 16 15 19 19 C 1.41765 * 119.99882 * 0.02605 * 17 16 15 20 20 H 1.08000 * 120.00161 * 359.97438 * 19 17 16 21 21 C 1.40344 * 119.99728 * 179.97438 * 19 17 16 22 22 N 1.30534 * 120.00332 * 0.02562 * 21 19 17 23 23 Si 1.86805 * 119.99777 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47081 * 90.00168 * 23 21 19 25 25 H 1.48498 * 109.47211 * 210.00035 * 23 21 19 26 26 H 1.48505 * 109.47070 * 330.00283 * 23 21 19 27 27 C 1.39949 * 119.80991 * 359.70631 * 16 15 14 28 28 C 1.37590 * 119.90751 * 0.02562 * 27 16 15 29 29 H 1.08994 * 109.47165 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47004 * 299.99614 * 1 2 3 31 31 H 1.09000 * 109.47173 * 59.99634 * 1 2 3 32 32 H 1.09003 * 109.47091 * 175.00157 * 4 2 1 33 33 H 1.09002 * 109.46980 * 294.99687 * 4 2 1 34 34 H 1.08000 * 120.03132 * 0.02562 * 7 6 5 35 35 H 1.08000 * 119.97252 * 180.28125 * 8 7 6 36 36 H 1.08003 * 119.94331 * 179.74894 * 9 8 7 37 37 H 1.07991 * 119.97443 * 179.97438 * 10 9 8 38 38 H 1.07995 * 120.03080 * 179.97438 * 11 10 9 39 39 H 1.08002 * 119.94945 * 0.02562 * 14 13 12 40 40 H 1.07998 * 120.04610 * 180.25356 * 15 14 13 41 41 H 0.96996 * 119.99811 * 179.97438 * 22 21 19 42 42 H 1.08007 * 120.04294 * 179.97438 * 27 16 15 43 43 H 1.08001 * 119.95418 * 179.97438 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 8 1.4702 -2.0305 1.3092 6 6 1.8226 -2.8088 2.3661 7 6 2.7033 -2.3247 3.3225 8 6 3.0559 -3.1160 4.3987 9 6 2.5400 -4.3932 4.5174 10 6 1.6666 -4.8802 3.5625 11 6 1.3066 -4.0909 2.4874 12 8 2.0063 -0.6735 -1.1668 13 6 2.1076 0.0602 -2.3033 14 6 2.6743 -0.5013 -3.4436 15 6 2.7737 0.2376 -4.6001 16 6 2.3148 1.5595 -4.6251 17 6 2.4258 2.3580 -5.8611 18 8 2.0262 3.5086 -5.8809 19 6 2.9975 1.7860 -7.0255 20 1 3.3521 0.7661 -7.0079 21 6 3.1025 2.5453 -8.2011 22 7 2.6743 3.7782 -8.2223 23 14 3.8565 1.7919 -9.7353 24 1 2.7918 1.1451 -10.5436 25 1 4.5108 2.8556 -10.5388 26 1 4.8662 0.7761 -9.3429 27 6 1.7507 2.1221 -3.4745 28 6 1.6501 1.3744 -2.3239 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 3.1263 -0.7996 1.2055 33 1 1.7516 -0.1584 2.1369 34 1 3.1094 -1.3284 3.2282 35 1 3.7379 -2.7379 5.1458 36 1 2.8201 -5.0118 5.3572 37 1 1.2653 -5.8783 3.6573 38 1 0.6247 -4.4718 1.7416 39 1 3.0321 -1.5201 -3.4222 40 1 3.2099 -0.2003 -5.4857 41 1 2.7473 4.3031 -9.0348 42 1 1.3957 3.1420 -3.4895 43 1 1.2154 1.8079 -1.4353 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233524883.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:33 Heat of formation + Delta-G solvation = -85.851962 kcal Electronic energy + Delta-G solvation = -25689.984432 eV Core-core repulsion = 21858.020046 eV Total energy + Delta-G solvation = -3831.964386 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.135 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.48437 -40.84032 -39.39789 -38.34204 -37.45224 -34.79409 -33.75818 -32.09744 -31.88397 -30.99048 -30.55580 -28.65969 -27.88856 -24.79981 -24.02702 -23.55467 -23.14720 -21.76971 -21.30939 -19.63879 -18.89162 -18.60746 -17.61624 -17.18546 -16.98280 -16.74457 -16.33470 -16.08653 -15.96814 -15.65734 -15.27631 -15.09251 -14.66856 -14.44777 -14.31307 -14.23884 -14.15320 -13.85644 -13.59671 -13.42973 -13.16670 -13.00460 -12.93470 -12.69413 -12.45809 -12.44530 -12.11074 -12.04414 -12.00709 -11.87902 -11.54541 -11.52546 -10.99125 -9.94851 -9.92917 -9.62196 -9.14352 -9.04132 -8.34632 -7.07519 0.22418 0.41654 0.46695 0.52088 1.38350 1.38701 1.55453 2.11109 2.17211 2.21084 2.21907 2.85173 2.87571 3.54448 3.74303 3.83207 3.85149 3.91735 3.96437 4.01848 4.09783 4.21142 4.28079 4.31118 4.34570 4.49499 4.52680 4.53048 4.58814 4.67042 4.75748 4.81162 4.87550 5.10484 5.10863 5.19419 5.23944 5.31775 5.39034 5.44737 5.50677 5.63002 5.74950 5.79803 5.88834 5.98427 6.43516 6.49838 6.69861 6.79999 8.24793 8.48850 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.029686 B = 0.001985 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.970349 B =14103.302325 C =14646.209098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.075 3.925 3 H 0.110 0.890 4 C 0.066 3.934 5 O -0.322 6.322 6 C 0.110 3.890 7 C -0.220 4.220 8 C -0.087 4.087 9 C -0.167 4.167 10 C -0.085 4.085 11 C -0.174 4.174 12 O -0.311 6.311 13 C 0.131 3.869 14 C -0.163 4.163 15 C -0.053 4.053 16 C -0.180 4.180 17 C 0.364 3.636 18 O -0.600 6.600 19 C -0.544 4.544 20 H 0.096 0.904 21 C 0.022 3.978 22 N -0.787 5.787 23 Si 0.996 3.004 24 H -0.258 1.258 25 H -0.269 1.269 26 H -0.245 1.245 27 C -0.066 4.066 28 C -0.209 4.209 29 H 0.063 0.937 30 H 0.095 0.905 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.111 0.889 34 H 0.141 0.859 35 H 0.146 0.854 36 H 0.145 0.855 37 H 0.149 0.851 38 H 0.127 0.873 39 H 0.149 0.851 40 H 0.141 0.859 41 H 0.282 0.718 42 H 0.110 0.890 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.296 -15.408 24.427 28.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.020 3.980 3 H 0.127 0.873 4 C -0.009 4.009 5 O -0.236 6.236 6 C 0.065 3.935 7 C -0.239 4.239 8 C -0.104 4.104 9 C -0.185 4.185 10 C -0.103 4.103 11 C -0.192 4.192 12 O -0.225 6.225 13 C 0.085 3.915 14 C -0.181 4.181 15 C -0.072 4.072 16 C -0.181 4.181 17 C 0.265 3.735 18 O -0.495 6.495 19 C -0.574 4.574 20 H 0.114 0.886 21 C -0.197 4.197 22 N -0.416 5.416 23 Si 0.814 3.186 24 H -0.183 1.183 25 H -0.193 1.193 26 H -0.168 1.168 27 C -0.085 4.085 28 C -0.227 4.227 29 H 0.082 0.918 30 H 0.114 0.886 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.129 0.871 34 H 0.158 0.842 35 H 0.164 0.836 36 H 0.163 0.837 37 H 0.166 0.834 38 H 0.145 0.855 39 H 0.167 0.833 40 H 0.158 0.842 41 H 0.092 0.908 42 H 0.128 0.872 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -0.023 -14.947 24.271 28.504 hybrid contribution 0.127 0.520 -0.854 1.008 sum 0.104 -14.427 23.417 27.504 Atomic orbital electron populations 1.22281 0.93764 1.03522 1.03671 1.22822 0.95960 0.96920 0.82325 0.87281 1.23049 0.98850 0.81892 0.97103 1.86123 1.67308 1.26849 1.43353 1.19326 0.95113 0.91652 0.87421 1.21521 1.02529 1.02680 0.97156 1.21317 0.98297 0.93990 0.96837 1.21429 0.99533 0.96704 1.00793 1.21288 0.96357 1.00009 0.92624 1.20695 1.04576 0.92589 1.01386 1.86114 1.81040 1.38649 1.16678 1.19196 0.95237 0.90112 0.86946 1.20574 1.04920 1.01755 0.90848 1.21374 0.95701 0.92262 0.97814 1.21463 1.02791 0.96654 0.97238 1.18793 0.80334 0.86851 0.87534 1.90434 1.51299 1.21118 1.86689 1.21472 1.37826 1.01337 0.96796 0.88616 1.27305 0.93618 0.94475 1.04328 1.70109 1.32506 1.09630 1.29396 0.85047 0.79198 0.78968 0.75401 1.18277 1.19312 1.16780 1.21134 0.95869 0.99352 0.92135 1.21283 1.07744 0.94166 0.99557 0.91830 0.88622 0.92394 0.90550 0.87144 0.84152 0.83609 0.83689 0.83362 0.85473 0.83315 0.84184 0.90766 0.87176 0.82784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.36 8.96 71.98 0.65 -2.72 16 2 C 0.08 1.51 2.63 30.59 0.08 1.59 16 3 H 0.11 1.86 6.30 -2.39 -0.02 1.85 16 4 C 0.07 1.09 4.61 71.98 0.33 1.42 16 5 O -0.32 -7.01 9.22 -87.84 -0.81 -7.82 16 6 C 0.11 2.18 6.69 22.50 0.15 2.33 16 7 C -0.22 -3.49 9.04 22.37 0.20 -3.28 16 8 C -0.09 -1.13 10.04 22.26 0.22 -0.91 16 9 C -0.17 -2.08 10.04 22.28 0.22 -1.86 16 10 C -0.08 -1.20 10.04 22.26 0.22 -0.97 16 11 C -0.17 -3.22 9.99 22.37 0.22 -2.99 16 12 O -0.31 -8.72 9.75 -85.12 -0.83 -9.55 16 13 C 0.13 4.25 6.62 22.72 0.15 4.40 16 14 C -0.16 -5.58 9.97 22.34 0.22 -5.35 16 15 C -0.05 -2.17 9.43 22.53 0.21 -1.96 16 16 C -0.18 -8.82 5.89 -19.99 -0.12 -8.94 16 17 C 0.36 21.85 6.91 25.61 0.18 22.03 16 18 O -0.60 -40.90 14.89 -4.73 -0.07 -40.97 16 19 C -0.54 -30.77 8.86 23.65 0.21 -30.56 16 20 H 0.10 4.78 6.01 -2.91 -0.02 4.77 16 21 C 0.02 1.18 5.50 85.40 0.47 1.65 16 22 N -0.79 -47.18 11.73 21.89 0.26 -46.92 16 23 Si 1.00 39.53 29.56 68.60 2.03 41.56 16 24 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 25 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 26 H -0.24 -9.00 7.11 99.48 0.71 -8.30 16 27 C -0.07 -2.88 9.59 22.53 0.22 -2.67 16 28 C -0.21 -7.01 8.21 22.34 0.18 -6.82 16 29 H 0.06 1.39 7.56 -2.39 -0.02 1.37 16 30 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.06 1.25 6.89 -2.39 -0.02 1.24 16 32 H 0.08 1.21 7.65 -2.39 -0.02 1.19 16 33 H 0.11 1.16 7.67 -2.39 -0.02 1.14 16 34 H 0.14 1.69 6.30 -2.91 -0.02 1.67 16 35 H 0.15 1.16 8.06 -2.91 -0.02 1.14 16 36 H 0.15 1.07 8.06 -2.91 -0.02 1.05 16 37 H 0.15 1.33 8.06 -2.92 -0.02 1.31 16 38 H 0.13 2.28 8.06 -2.91 -0.02 2.25 16 39 H 0.15 4.28 8.06 -2.91 -0.02 4.26 16 40 H 0.14 5.42 6.19 -2.91 -0.02 5.41 16 41 H 0.28 15.05 8.29 -92.71 -0.77 14.28 16 42 H 0.11 5.04 7.65 -2.91 -0.02 5.02 16 43 H 0.15 3.99 5.40 -2.91 -0.02 3.97 16 Total: -1.00 -78.62 363.83 5.64 -72.98 By element: Atomic # 1 Polarization: 25.30 SS G_CDS: 1.04 Total: 26.33 kcal Atomic # 6 Polarization: -39.64 SS G_CDS: 4.03 Total: -35.61 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: 0.26 Total: -46.92 kcal Atomic # 8 Polarization: -56.63 SS G_CDS: -1.71 Total: -58.34 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 2.03 Total: 41.56 kcal Total: -78.62 5.64 -72.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233524883.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.871 kcal (2) G-P(sol) polarization free energy of solvation -78.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds