Wall clock time and date at job start Tue Mar 31 2020 15:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.47099 * 2 1 4 4 O 1.21300 * 120.00467 * 359.97438 * 3 2 1 5 5 C 1.46790 * 119.99963 * 179.97438 * 3 2 1 6 6 C 1.40036 * 120.19501 * 0.24871 * 5 3 2 7 7 C 1.38129 * 119.81895 * 180.30035 * 6 5 3 8 8 O 1.35989 * 119.88580 * 179.70398 * 7 6 5 9 9 C 1.39043 * 120.22428 * 359.72360 * 7 6 5 10 10 C 1.38027 * 120.40377 * 0.02562 * 9 7 6 11 11 C 1.38664 * 120.17360 * 359.97438 * 10 9 7 12 12 O 1.35678 * 120.11421 * 180.02562 * 11 10 9 13 13 C 1.42900 * 116.99694 * 5.78560 * 12 11 10 14 14 H 1.08998 * 109.47321 * 35.37243 * 13 12 11 15 15 C 1.50696 * 109.47303 * 275.37086 * 13 12 11 16 16 H 1.07999 * 119.99736 * 334.72324 * 15 13 12 17 17 C 1.37879 * 120.00310 * 154.72521 * 15 13 12 18 18 N 1.31512 * 120.00159 * 174.65643 * 17 15 13 19 19 Si 1.86803 * 119.99597 * 354.65546 * 17 15 13 20 20 H 1.48507 * 109.46681 * 94.75476 * 19 17 15 21 21 H 1.48498 * 109.46805 * 214.75012 * 19 17 15 22 22 H 1.48491 * 109.47098 * 334.75491 * 19 17 15 23 23 C 1.50707 * 109.46992 * 155.36945 * 13 12 11 24 24 C 1.38234 * 120.00018 * 215.67590 * 23 13 12 25 25 C 1.38231 * 119.99656 * 179.97438 * 24 23 13 26 26 C 1.38240 * 120.00147 * 359.97438 * 25 24 23 27 27 C 1.38231 * 119.99983 * 0.07204 * 26 25 24 28 28 C 1.38233 * 120.00169 * 359.88924 * 27 26 25 29 29 H 1.09008 * 109.46719 * 59.99906 * 1 2 3 30 30 H 1.08998 * 109.47413 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47233 * 300.00359 * 1 2 3 32 32 H 1.08995 * 109.47233 * 239.99641 * 2 1 3 33 33 H 1.08999 * 109.46533 * 119.99849 * 2 1 3 34 34 H 1.08000 * 120.09346 * 0.02726 * 6 5 3 35 35 H 0.96704 * 113.99571 * 270.02108 * 8 7 6 36 36 H 1.07993 * 119.79661 * 179.97438 * 9 7 6 37 37 H 1.08001 * 119.90847 * 179.97438 * 10 9 7 38 38 H 0.96995 * 120.00222 * 179.97438 * 18 17 15 39 39 H 1.08001 * 119.99937 * 359.97094 * 24 23 13 40 40 H 1.08001 * 120.00148 * 179.72040 * 25 24 23 41 41 H 1.08002 * 119.99788 * 179.97438 * 26 25 24 42 42 H 1.07997 * 120.00042 * 179.97438 * 27 26 25 43 43 H 1.08001 * 120.00224 * 180.10799 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3428 -0.0005 5 6 3.4755 1.6890 0.0006 6 6 4.3891 0.6277 -0.0041 7 6 5.7455 0.8890 0.0027 8 8 6.6339 -0.1406 0.0042 9 6 6.2055 2.2011 0.0085 10 6 5.3132 3.2542 0.0079 11 6 3.9481 3.0110 0.0011 12 8 3.0720 4.0470 0.0000 13 6 3.6211 5.3607 -0.1222 14 1 4.4888 5.3320 -0.7812 15 6 4.0391 5.8589 1.2372 16 1 3.5638 5.4685 2.1250 17 6 5.0282 6.8132 1.3477 18 7 5.3201 7.3246 2.5236 19 14 5.9534 7.3795 -0.1731 20 1 5.3146 8.6068 -0.7126 21 1 7.3641 7.6729 0.1865 22 1 5.9170 6.3093 -1.2018 23 6 2.5824 6.2876 -0.6995 24 6 2.9611 7.2968 -1.5649 25 6 2.0083 8.1466 -2.0947 26 6 0.6767 7.9868 -1.7596 27 6 0.2982 6.9782 -0.8934 28 6 1.2508 6.1279 -0.3642 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 4.0343 -0.3923 -0.0087 35 1 6.8865 -0.4407 0.8881 36 1 7.2674 2.3975 0.0142 37 1 5.6793 4.2702 0.0128 38 1 6.0162 7.9956 2.6013 39 1 4.0014 7.4213 -1.8270 40 1 2.3046 8.9379 -2.7674 41 1 -0.0677 8.6511 -2.1733 42 1 -0.7421 6.8537 -0.6313 43 1 0.9549 5.3388 0.3112 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234073453.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:07 Heat of formation + Delta-G solvation = -63.227404 kcal Electronic energy + Delta-G solvation = -27739.558241 eV Core-core repulsion = 23908.574929 eV Total energy + Delta-G solvation = -3830.983312 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.135 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.25308 -38.86109 -38.46723 -37.66477 -35.45398 -33.19013 -32.78673 -31.36849 -30.94220 -30.26903 -28.44766 -27.39722 -25.26359 -23.48898 -22.88815 -22.08740 -21.51332 -20.30957 -19.46234 -17.88178 -17.46938 -17.33223 -16.55476 -15.93997 -15.62834 -15.27456 -15.04117 -14.71464 -14.55696 -14.37198 -13.98803 -13.73861 -13.61763 -13.21995 -13.00369 -12.77816 -12.69428 -12.34172 -12.28167 -12.20238 -12.01508 -11.59928 -11.55375 -11.19957 -11.08994 -11.05784 -10.90359 -10.54913 -10.41830 -10.08658 -9.82953 -9.59616 -9.15756 -8.91395 -8.78633 -8.26741 -7.97897 -7.54732 -6.41264 -4.44430 0.99649 1.64646 2.00942 2.07758 2.76258 3.01762 3.05327 3.13659 3.88975 3.95347 4.07046 4.23999 4.45716 4.48151 4.90649 5.02559 5.12004 5.16995 5.18511 5.44411 5.47108 5.49928 5.52979 5.64632 5.74668 5.80580 5.83014 5.95881 5.97445 6.03716 6.12063 6.20354 6.23782 6.29849 6.31680 6.56638 6.59483 6.68911 6.71977 6.90952 7.06387 7.13542 7.16884 7.36236 7.66335 7.76852 7.95950 8.00465 8.23707 8.70478 9.16124 10.70451 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.010133 B = 0.005571 C = 0.003984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2762.610806 B = 5024.381667 C = 7026.768440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.167 4.167 3 C 0.391 3.609 4 O -0.430 6.430 5 C -0.214 4.214 6 C -0.066 4.066 7 C 0.030 3.970 8 O -0.498 6.498 9 C -0.075 4.075 10 C -0.192 4.192 11 C 0.215 3.785 12 O -0.274 6.274 13 C 0.201 3.799 14 H 0.050 0.950 15 C -0.532 4.532 16 H 0.089 0.911 17 C 0.088 3.912 18 N -0.873 5.873 19 Si 0.850 3.150 20 H -0.262 1.262 21 H -0.280 1.280 22 H -0.257 1.257 23 C -0.042 4.042 24 C -0.132 4.132 25 C -0.122 4.122 26 C -0.141 4.141 27 C -0.124 4.124 28 C -0.090 4.090 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.135 0.865 35 H 0.381 0.619 36 H 0.129 0.871 37 H 0.149 0.851 38 H 0.271 0.729 39 H 0.108 0.892 40 H 0.113 0.887 41 H 0.112 0.888 42 H 0.114 0.886 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.542 -11.210 -6.143 13.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.205 4.205 3 C 0.267 3.733 4 O -0.304 6.304 5 C -0.216 4.216 6 C -0.085 4.085 7 C -0.014 4.014 8 O -0.307 6.307 9 C -0.093 4.093 10 C -0.211 4.211 11 C 0.165 3.835 12 O -0.185 6.185 13 C 0.146 3.854 14 H 0.067 0.933 15 C -0.569 4.569 16 H 0.107 0.893 17 C -0.117 4.117 18 N -0.508 5.508 19 Si 0.677 3.323 20 H -0.187 1.187 21 H -0.206 1.206 22 H -0.183 1.183 23 C -0.042 4.042 24 C -0.150 4.150 25 C -0.140 4.140 26 C -0.159 4.159 27 C -0.142 4.142 28 C -0.108 4.108 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.153 0.847 35 H 0.234 0.766 36 H 0.147 0.853 37 H 0.166 0.834 38 H 0.081 0.919 39 H 0.126 0.874 40 H 0.131 0.869 41 H 0.130 0.870 42 H 0.132 0.868 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.119 -10.478 -6.619 12.780 hybrid contribution 1.141 0.589 -0.008 1.284 sum -1.977 -9.890 -6.627 12.068 Atomic orbital electron populations 1.21573 0.93938 1.01235 1.03185 1.21954 0.98050 0.96431 1.04029 1.22062 0.87521 0.90842 0.72857 1.90587 1.57679 1.47301 1.34827 1.19725 0.95437 0.90719 1.15724 1.21308 0.91797 0.98301 0.97118 1.18063 0.88015 0.86773 1.08516 1.84888 1.62329 1.50359 1.33113 1.21428 1.00260 0.91541 0.96107 1.21510 0.92116 1.01114 1.06318 1.19257 0.88887 0.87674 0.87686 1.86154 1.34076 1.14573 1.83650 1.19753 0.90967 0.76960 0.97688 0.93270 1.21203 1.20692 1.24072 0.90948 0.89267 1.24850 0.96112 0.95021 0.95743 1.69859 1.30786 1.27125 1.23071 0.87342 0.80265 0.80683 0.83977 1.18698 1.20597 1.18263 1.20102 0.94802 0.96276 0.93061 1.20866 0.98947 0.96808 0.98393 1.20884 0.93283 0.99197 1.00682 1.20918 0.95723 0.99196 1.00110 1.21074 0.99050 0.95918 0.98151 1.20985 0.92208 0.98667 0.98933 0.92173 0.92505 0.92080 0.88911 0.88870 0.84715 0.76560 0.85320 0.83373 0.91907 0.87374 0.86897 0.86999 0.86794 0.85467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.20 37.16 0.34 -1.22 16 2 C -0.17 -1.87 5.03 -27.88 -0.14 -2.01 16 3 C 0.39 6.38 7.11 -30.85 -0.22 6.16 16 4 O -0.43 -8.59 14.78 -16.41 -0.24 -8.84 16 5 C -0.21 -3.67 5.88 -104.96 -0.62 -4.28 16 6 C -0.07 -0.93 9.40 -38.95 -0.37 -1.29 16 7 C 0.03 0.44 6.69 -39.32 -0.26 0.18 16 8 O -0.50 -6.00 13.50 -19.70 -0.27 -6.27 16 9 C -0.07 -1.20 9.97 -39.36 -0.39 -1.59 16 10 C -0.19 -3.72 8.68 -39.50 -0.34 -4.06 16 11 C 0.22 4.39 6.61 -38.62 -0.26 4.13 16 12 O -0.27 -6.30 7.02 -40.68 -0.29 -6.59 16 13 C 0.20 4.76 1.57 -29.03 -0.05 4.71 16 14 H 0.05 1.15 3.45 -51.93 -0.18 0.97 16 15 C -0.53 -14.28 8.22 -34.44 -0.28 -14.56 16 16 H 0.09 2.69 8.06 -52.49 -0.42 2.26 16 17 C 0.09 2.38 5.47 -17.82 -0.10 2.28 16 18 N -0.87 -25.05 13.96 55.43 0.77 -24.28 16 19 Si 0.85 19.57 23.47 -169.99 -3.99 15.58 16 20 H -0.26 -5.93 6.83 56.52 0.39 -5.54 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.26 -5.51 5.86 56.52 0.33 -5.18 16 23 C -0.04 -0.95 4.92 -104.62 -0.51 -1.46 16 24 C -0.13 -2.78 8.65 -39.59 -0.34 -3.12 16 25 C -0.12 -2.22 10.05 -39.58 -0.40 -2.62 16 26 C -0.14 -2.41 10.05 -39.58 -0.40 -2.81 16 27 C -0.12 -2.26 10.05 -39.59 -0.40 -2.66 16 28 C -0.09 -1.92 9.35 -39.58 -0.37 -2.29 16 29 H 0.06 0.72 8.10 -51.92 -0.42 0.29 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 32 H 0.09 0.86 8.08 -51.93 -0.42 0.44 16 33 H 0.09 0.86 8.09 -51.93 -0.42 0.44 16 34 H 0.14 1.42 7.05 -52.49 -0.37 1.05 16 35 H 0.38 2.78 9.06 45.56 0.41 3.20 16 36 H 0.13 1.79 8.06 -52.49 -0.42 1.37 16 37 H 0.15 3.12 4.91 -52.49 -0.26 2.86 16 38 H 0.27 7.24 8.31 -40.82 -0.34 6.91 16 39 H 0.11 2.24 4.88 -52.49 -0.26 1.98 16 40 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 41 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 42 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 43 H 0.13 2.82 7.65 -52.49 -0.40 2.42 16 LS Contribution 355.53 15.07 5.36 5.36 Total: -1.00 -31.69 355.53 -8.24 -39.93 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -4.49 Total: 11.61 kcal Atomic # 6 Polarization: -21.41 SS G_CDS: -5.10 Total: -26.52 kcal Atomic # 7 Polarization: -25.05 SS G_CDS: 0.77 Total: -24.28 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.79 Total: -21.69 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -3.99 Total: 15.58 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.69 -8.24 -39.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234073453.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.293 kcal (2) G-P(sol) polarization free energy of solvation -31.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds