Wall clock time and date at job start Tue Mar 31 2020 15:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.47099 * 2 1 4 4 O 1.21300 * 120.00467 * 359.97438 * 3 2 1 5 5 C 1.46790 * 119.99963 * 179.97438 * 3 2 1 6 6 C 1.40036 * 120.19501 * 0.24871 * 5 3 2 7 7 C 1.38129 * 119.81895 * 180.30035 * 6 5 3 8 8 O 1.35989 * 119.88580 * 179.70398 * 7 6 5 9 9 C 1.39043 * 120.22428 * 359.72360 * 7 6 5 10 10 C 1.38027 * 120.40377 * 0.02562 * 9 7 6 11 11 C 1.38664 * 120.17360 * 359.97438 * 10 9 7 12 12 O 1.35678 * 120.11421 * 180.02562 * 11 10 9 13 13 C 1.42900 * 116.99694 * 5.78560 * 12 11 10 14 14 H 1.08998 * 109.47321 * 35.37243 * 13 12 11 15 15 C 1.50696 * 109.47303 * 275.37086 * 13 12 11 16 16 H 1.07999 * 119.99736 * 334.72324 * 15 13 12 17 17 C 1.37879 * 120.00310 * 154.72521 * 15 13 12 18 18 N 1.31512 * 120.00159 * 174.65643 * 17 15 13 19 19 Si 1.86803 * 119.99597 * 354.65546 * 17 15 13 20 20 H 1.48507 * 109.46681 * 94.75476 * 19 17 15 21 21 H 1.48498 * 109.46805 * 214.75012 * 19 17 15 22 22 H 1.48491 * 109.47098 * 334.75491 * 19 17 15 23 23 C 1.50707 * 109.46992 * 155.36945 * 13 12 11 24 24 C 1.38234 * 120.00018 * 215.67590 * 23 13 12 25 25 C 1.38231 * 119.99656 * 179.97438 * 24 23 13 26 26 C 1.38240 * 120.00147 * 359.97438 * 25 24 23 27 27 C 1.38231 * 119.99983 * 0.07204 * 26 25 24 28 28 C 1.38233 * 120.00169 * 359.88924 * 27 26 25 29 29 H 1.09008 * 109.46719 * 59.99906 * 1 2 3 30 30 H 1.08998 * 109.47413 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47233 * 300.00359 * 1 2 3 32 32 H 1.08995 * 109.47233 * 239.99641 * 2 1 3 33 33 H 1.08999 * 109.46533 * 119.99849 * 2 1 3 34 34 H 1.08000 * 120.09346 * 0.02726 * 6 5 3 35 35 H 0.96704 * 113.99571 * 270.02108 * 8 7 6 36 36 H 1.07993 * 119.79661 * 179.97438 * 9 7 6 37 37 H 1.08001 * 119.90847 * 179.97438 * 10 9 7 38 38 H 0.96995 * 120.00222 * 179.97438 * 18 17 15 39 39 H 1.08001 * 119.99937 * 359.97094 * 24 23 13 40 40 H 1.08001 * 120.00148 * 179.72040 * 25 24 23 41 41 H 1.08002 * 119.99788 * 179.97438 * 26 25 24 42 42 H 1.07997 * 120.00042 * 179.97438 * 27 26 25 43 43 H 1.08001 * 120.00224 * 180.10799 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3428 -0.0005 5 6 3.4755 1.6890 0.0006 6 6 4.3891 0.6277 -0.0041 7 6 5.7455 0.8890 0.0027 8 8 6.6339 -0.1406 0.0042 9 6 6.2055 2.2011 0.0085 10 6 5.3132 3.2542 0.0079 11 6 3.9481 3.0110 0.0011 12 8 3.0720 4.0470 0.0000 13 6 3.6211 5.3607 -0.1222 14 1 4.4888 5.3320 -0.7812 15 6 4.0391 5.8589 1.2372 16 1 3.5638 5.4685 2.1250 17 6 5.0282 6.8132 1.3477 18 7 5.3201 7.3246 2.5236 19 14 5.9534 7.3795 -0.1731 20 1 5.3146 8.6068 -0.7126 21 1 7.3641 7.6729 0.1865 22 1 5.9170 6.3093 -1.2018 23 6 2.5824 6.2876 -0.6995 24 6 2.9611 7.2968 -1.5649 25 6 2.0083 8.1466 -2.0947 26 6 0.6767 7.9868 -1.7596 27 6 0.2982 6.9782 -0.8934 28 6 1.2508 6.1279 -0.3642 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 4.0343 -0.3923 -0.0087 35 1 6.8865 -0.4407 0.8881 36 1 7.2674 2.3975 0.0142 37 1 5.6793 4.2702 0.0128 38 1 6.0162 7.9956 2.6013 39 1 4.0014 7.4213 -1.8270 40 1 2.3046 8.9379 -2.7674 41 1 -0.0677 8.6511 -2.1733 42 1 -0.7421 6.8537 -0.6313 43 1 0.9549 5.3388 0.3112 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234073453.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:06 Heat of formation + Delta-G solvation = -83.588977 kcal Electronic energy + Delta-G solvation = -27740.441185 eV Core-core repulsion = 23908.574929 eV Total energy + Delta-G solvation = -3831.866256 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.135 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.64405 -40.35607 -39.71346 -39.07898 -36.72396 -35.13123 -33.86230 -33.05309 -32.19010 -31.78537 -29.77691 -29.19566 -26.42429 -25.21577 -24.16672 -23.60013 -22.82703 -21.83349 -20.69974 -19.44760 -19.06439 -18.83850 -18.03662 -17.19930 -16.92614 -16.83062 -16.39716 -16.00732 -15.93417 -15.75851 -15.44126 -15.18880 -15.06213 -14.92315 -14.62091 -14.29086 -14.10852 -13.79150 -13.64829 -13.46910 -13.22831 -13.06560 -12.77443 -12.62756 -12.50426 -12.44623 -12.02452 -11.98035 -11.96238 -11.67173 -11.52282 -11.35258 -10.93601 -10.44460 -10.10768 -9.79622 -9.55070 -8.97421 -8.50767 -6.58858 -0.30717 0.34621 0.47705 0.54788 1.16198 1.18611 1.26777 1.49898 2.11523 2.38134 2.67687 2.78497 3.01676 3.07400 3.35336 3.80450 3.94338 3.96370 4.06356 4.15080 4.16075 4.25224 4.26197 4.32842 4.39193 4.45371 4.55550 4.70686 4.76517 4.81111 4.89876 4.98966 5.04556 5.05146 5.10452 5.17682 5.21798 5.31873 5.35375 5.38967 5.56976 5.60523 5.63829 5.78860 5.97159 6.15228 6.38523 6.60393 6.76980 6.93035 7.07656 8.65686 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.010133 B = 0.005571 C = 0.003984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2762.610806 B = 5024.381667 C = 7026.768440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.157 4.157 3 C 0.384 3.616 4 O -0.481 6.481 5 C -0.223 4.223 6 C -0.047 4.047 7 C 0.051 3.949 8 O -0.495 6.495 9 C -0.076 4.076 10 C -0.217 4.217 11 C 0.166 3.834 12 O -0.296 6.296 13 C 0.213 3.787 14 H 0.049 0.951 15 C -0.531 4.531 16 H 0.032 0.968 17 C 0.041 3.959 18 N -0.924 5.924 19 Si 0.909 3.091 20 H -0.248 1.248 21 H -0.273 1.273 22 H -0.240 1.240 23 C -0.075 4.075 24 C -0.152 4.152 25 C -0.119 4.119 26 C -0.128 4.128 27 C -0.122 4.122 28 C -0.115 4.115 29 H 0.043 0.957 30 H 0.090 0.910 31 H 0.040 0.960 32 H 0.125 0.875 33 H 0.124 0.876 34 H 0.183 0.817 35 H 0.408 0.592 36 H 0.148 0.852 37 H 0.121 0.879 38 H 0.274 0.726 39 H 0.108 0.892 40 H 0.152 0.848 41 H 0.159 0.841 42 H 0.143 0.857 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.517 -13.110 -8.693 15.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.194 4.194 3 C 0.263 3.737 4 O -0.358 6.358 5 C -0.225 4.225 6 C -0.065 4.065 7 C 0.006 3.994 8 O -0.307 6.307 9 C -0.095 4.095 10 C -0.236 4.236 11 C 0.117 3.883 12 O -0.208 6.208 13 C 0.157 3.843 14 H 0.066 0.934 15 C -0.569 4.569 16 H 0.051 0.949 17 C -0.160 4.160 18 N -0.562 5.562 19 Si 0.732 3.268 20 H -0.173 1.173 21 H -0.199 1.199 22 H -0.165 1.165 23 C -0.075 4.075 24 C -0.170 4.170 25 C -0.136 4.136 26 C -0.146 4.146 27 C -0.140 4.140 28 C -0.133 4.133 29 H 0.062 0.938 30 H 0.109 0.891 31 H 0.060 0.940 32 H 0.143 0.857 33 H 0.142 0.858 34 H 0.200 0.800 35 H 0.266 0.734 36 H 0.166 0.834 37 H 0.139 0.861 38 H 0.083 0.917 39 H 0.126 0.874 40 H 0.169 0.831 41 H 0.177 0.823 42 H 0.161 0.839 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.082 -12.428 -9.161 15.745 hybrid contribution 1.102 0.967 0.833 1.686 sum -1.980 -11.461 -8.328 14.305 Atomic orbital electron populations 1.21589 0.94045 1.02796 1.01504 1.22024 0.97922 0.92599 1.06821 1.22937 0.86859 0.92936 0.70941 1.90580 1.58579 1.49433 1.37166 1.20165 0.96998 0.90108 1.15201 1.21722 0.91005 0.99358 0.94446 1.18042 0.88665 0.86585 1.06111 1.84834 1.61518 1.48941 1.35398 1.21660 1.00710 0.91779 0.95314 1.21370 0.92476 1.00956 1.08811 1.19820 0.89319 0.88510 0.90627 1.86119 1.34919 1.14679 1.85075 1.19464 0.91543 0.77836 0.95426 0.93390 1.21157 1.20594 1.24029 0.91077 0.94941 1.25594 0.96721 0.94830 0.98889 1.69999 1.32087 1.28515 1.25585 0.86412 0.78902 0.80955 0.80533 1.17287 1.19858 1.16456 1.20172 0.95100 0.97159 0.95088 1.21059 0.99883 0.97204 0.98904 1.21366 0.93189 0.98938 1.00140 1.21435 0.96372 0.98458 0.98313 1.21425 0.99739 0.95248 0.97562 1.20938 0.92920 0.99536 0.99909 0.93782 0.89115 0.94045 0.85661 0.85822 0.79974 0.73436 0.83400 0.86124 0.91664 0.87367 0.83078 0.82331 0.83924 0.88168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 9.20 71.98 0.66 -2.25 16 2 C -0.16 -3.07 5.03 29.85 0.15 -2.92 16 3 C 0.38 12.64 7.11 27.92 0.20 12.84 16 4 O -0.48 -20.53 14.78 17.89 0.26 -20.27 16 5 C -0.22 -7.67 5.88 -20.08 -0.12 -7.78 16 6 C -0.05 -1.17 9.40 22.68 0.21 -0.96 16 7 C 0.05 1.32 6.69 22.44 0.15 1.47 16 8 O -0.49 -9.68 13.50 -93.42 -1.26 -10.94 16 9 C -0.08 -2.41 9.97 22.41 0.22 -2.18 16 10 C -0.22 -8.90 8.68 22.32 0.19 -8.71 16 11 C 0.17 7.22 6.61 22.90 0.15 7.37 16 12 O -0.30 -14.95 7.02 -68.97 -0.48 -15.43 16 13 C 0.21 10.89 1.57 29.10 0.05 10.94 16 14 H 0.05 2.41 3.45 -2.39 -0.01 2.41 16 15 C -0.53 -31.24 8.22 25.60 0.21 -31.02 16 16 H 0.03 2.20 8.06 -2.91 -0.02 2.17 16 17 C 0.04 2.34 5.47 84.66 0.46 2.80 16 18 N -0.92 -56.52 13.96 21.45 0.30 -56.22 16 19 Si 0.91 41.95 23.47 68.60 1.61 43.56 16 20 H -0.25 -10.87 6.83 99.48 0.68 -10.19 16 21 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 22 H -0.24 -10.29 5.86 99.48 0.58 -9.71 16 23 C -0.07 -3.57 4.92 -19.86 -0.10 -3.67 16 24 C -0.15 -6.42 8.65 22.27 0.19 -6.23 16 25 C -0.12 -4.01 10.05 22.27 0.22 -3.79 16 26 C -0.13 -3.98 10.05 22.27 0.22 -3.76 16 27 C -0.12 -4.38 10.05 22.27 0.22 -4.15 16 28 C -0.11 -5.21 9.35 22.27 0.21 -5.00 16 29 H 0.04 1.03 8.10 -2.38 -0.02 1.01 16 30 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.04 0.99 8.10 -2.39 -0.02 0.98 16 32 H 0.13 1.72 8.08 -2.39 -0.02 1.70 16 33 H 0.12 1.74 8.09 -2.39 -0.02 1.72 16 34 H 0.18 2.76 7.05 -2.91 -0.02 2.74 16 35 H 0.41 3.96 9.06 -74.05 -0.67 3.29 16 36 H 0.15 3.97 8.06 -2.91 -0.02 3.94 16 37 H 0.12 5.51 4.91 -2.91 -0.01 5.49 16 38 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 39 H 0.11 4.44 4.88 -2.91 -0.01 4.43 16 40 H 0.15 3.92 8.06 -2.91 -0.02 3.90 16 41 H 0.16 3.50 8.06 -2.91 -0.02 3.47 16 42 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 43 H 0.10 4.96 7.65 -2.91 -0.02 4.94 16 Total: -1.00 -79.57 355.53 4.18 -75.39 By element: Atomic # 1 Polarization: 30.70 SS G_CDS: 0.23 Total: 30.93 kcal Atomic # 6 Polarization: -50.53 SS G_CDS: 3.52 Total: -47.01 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: 0.30 Total: -56.22 kcal Atomic # 8 Polarization: -45.16 SS G_CDS: -1.48 Total: -46.64 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 1.61 Total: 43.56 kcal Total: -79.57 4.18 -75.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234073453.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.203 kcal (2) G-P(sol) polarization free energy of solvation -79.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds