Wall clock time and date at job start Tue Mar 31 2020 16:36:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.08995 * 109.47349 * 2 1
4 4 N 1.46499 * 109.46984 * 119.99932 * 2 1 3
5 5 C 1.34777 * 120.00047 * 275.00028 * 4 2 1
6 6 O 1.21272 * 119.99890 * 359.97438 * 5 4 2
7 7 C 1.50699 * 119.99669 * 180.02562 * 5 4 2
8 8 S 1.81001 * 109.46778 * 179.97438 * 7 5 4
9 9 C 1.76205 * 100.00084 * 179.97438 * 8 7 5
10 10 H 1.07994 * 119.99621 * 0.02562 * 9 8 7
11 11 C 1.38797 * 120.00035 * 179.97438 * 9 8 7
12 12 N 1.31635 * 119.99967 * 0.02562 * 11 9 8
13 13 Si 1.86800 * 119.99969 * 180.02562 * 11 9 8
14 14 H 1.48498 * 109.47163 * 90.00066 * 13 11 9
15 15 H 1.48503 * 109.46967 * 210.00192 * 13 11 9
16 16 H 1.48499 * 109.47219 * 330.00055 * 13 11 9
17 17 C 1.50704 * 109.46682 * 239.99741 * 2 1 3
18 18 C 1.38140 * 120.02374 * 265.20733 * 17 2 1
19 19 C 1.38451 * 120.04571 * 180.28006 * 18 17 2
20 20 F 1.35104 * 119.94889 * 179.74503 * 19 18 17
21 21 C 1.38483 * 120.09672 * 359.77007 * 19 18 17
22 22 C 1.38094 * 120.05326 * 0.02562 * 21 19 18
23 23 C 1.38858 * 120.02221 * 85.00503 * 17 2 1
24 24 N 1.39819 * 120.05152 * 359.96989 * 23 17 2
25 25 C 1.46901 * 110.99791 * 239.72975 * 24 23 17
26 26 C 1.46898 * 110.99821 * 115.77293 * 24 23 17
27 27 H 1.09002 * 109.46909 * 300.00197 * 1 2 3
28 28 H 1.09003 * 109.47644 * 59.99907 * 1 2 3
29 29 H 1.09003 * 109.47661 * 180.02562 * 1 2 3
30 30 H 0.97008 * 120.00253 * 94.99541 * 4 2 1
31 31 H 1.08998 * 109.47249 * 299.99211 * 7 5 4
32 32 H 1.08995 * 109.47546 * 59.99447 * 7 5 4
33 33 H 0.96997 * 119.99996 * 180.02562 * 12 11 9
34 34 H 1.07996 * 119.98108 * 0.02562 * 18 17 2
35 35 H 1.08007 * 119.96807 * 179.97438 * 21 19 18
36 36 H 1.07995 * 120.02679 * 179.97438 * 22 21 19
37 37 H 1.09002 * 109.47401 * 59.99809 * 25 24 23
38 38 H 1.09001 * 109.46874 * 299.99822 * 25 24 23
39 39 H 1.09004 * 109.46970 * 179.97438 * 25 24 23
40 40 H 1.09006 * 109.46770 * 179.97438 * 26 24 23
41 41 H 1.09001 * 109.47456 * 299.99925 * 26 24 23
42 42 H 1.09000 * 109.46814 * 60.00231 * 26 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 7 2.0183 -0.6906 1.1962
5 6 2.1470 -0.0182 2.3571
6 8 1.8590 1.1585 2.4115
7 6 2.6498 -0.7286 3.5874
8 16 2.7113 0.4346 4.9728
9 6 3.3142 -0.6307 6.2403
10 1 3.5236 -1.6670 6.0202
11 6 3.5211 -0.1376 7.5211
12 7 3.2664 1.1258 7.7891
13 14 4.1610 -1.2667 8.8646
14 1 5.6455 -1.2282 8.8782
15 1 3.6420 -0.8143 10.1803
16 1 3.7043 -2.6554 8.6033
17 6 2.0322 -0.7105 -1.2305
18 6 2.3568 -2.0519 -1.1700
19 6 2.8237 -2.7037 -2.2988
20 9 3.1455 -4.0143 -2.2361
21 6 2.9620 -2.0140 -3.4916
22 6 2.6347 -0.6740 -3.5577
23 6 2.1651 -0.0183 -2.4269
24 7 1.8325 1.3383 -2.4916
25 6 0.7665 1.5726 -3.4748
26 6 3.0150 2.1564 -2.7919
27 1 -0.3633 0.5139 0.8900
28 1 -0.3634 0.5138 -0.8900
29 1 -0.3634 -1.0277 0.0005
30 1 2.2489 -1.6318 1.1527
31 1 1.9776 -1.5508 3.8325
32 1 3.6491 -1.1205 3.3979
33 1 3.4113 1.4705 8.6841
34 1 2.2501 -2.5916 -0.2407
35 1 3.3268 -2.5244 -4.3708
36 1 2.7430 -0.1365 -4.4881
37 1 -0.1214 1.0083 -3.1896
38 1 1.1027 1.2478 -4.4595
39 1 0.5270 2.6356 -3.5046
40 1 2.7280 3.2070 -2.8369
41 1 3.7618 2.0165 -2.0103
42 1 3.4326 1.8527 -3.7519
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001519158275.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 16:36:06
Heat of formation + Delta-G solvation = -43.736763 kcal
Electronic energy + Delta-G solvation = -24967.206743 eV
Core-core repulsion = 21181.345007 eV
Total energy + Delta-G solvation = -3785.861737 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 326.121 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-49.18163 -40.67364 -39.04691 -36.79965 -35.35730 -32.40789 -31.88137 -30.41569
-29.51488 -28.36754 -27.91441 -25.47051 -24.88400 -24.24249 -22.07252 -21.11444
-20.03926 -18.25754 -17.49072 -17.12570 -16.92166 -16.12261 -15.94231 -15.63262
-15.31470 -14.93920 -14.82071 -14.78217 -14.52250 -14.04499 -13.86198 -13.49812
-13.39953 -13.28198 -12.95360 -12.78111 -12.61714 -12.35926 -12.14802 -12.07123
-11.88794 -11.80961 -11.47649 -11.08689 -11.03961 -11.00091 -10.74082 -9.79526
-9.43329 -9.31909 -9.05339 -8.99313 -8.88582 -8.73794 -8.20931 -6.47181
-6.19601 -3.89752 0.68928 0.79433 3.01474 3.11106 3.15780 3.24033
3.29688 3.34096 3.44552 3.73420 3.86560 4.22563 4.27272 4.38888
4.68087 4.74685 4.89291 4.94211 5.10091 5.15519 5.16367 5.19342
5.24197 5.32257 5.36770 5.44491 5.53673 5.61187 5.64178 5.66291
5.72789 5.80331 5.92030 5.93965 6.16816 6.18170 6.26093 6.34612
6.47711 6.70626 6.95251 7.61793 7.72198 8.37447 8.65112 9.25810
10.87811
Molecular weight = 326.12amu
Principal moments of inertia in cm(-1)
A = 0.017535 B = 0.002722 C = 0.002471
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1596.461033 B =10282.607568 C =11328.625163
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C 0.192 3.808
3 H 0.113 0.887
4 N -0.739 5.739
5 C 0.535 3.465
6 O -0.513 6.513
7 C -0.154 4.154
8 S -0.058 6.058
9 C -0.535 4.535
10 H 0.072 0.928
11 C 0.073 3.927
12 N -0.868 5.868
13 Si 0.918 3.082
14 H -0.277 1.277
15 H -0.282 1.282
16 H -0.272 1.272
17 C -0.032 4.032
18 C -0.147 4.147
19 C 0.103 3.897
20 F -0.138 7.138
21 C -0.148 4.148
22 C -0.116 4.116
23 C 0.085 3.915
24 N -0.506 5.506
25 C 0.027 3.973
26 C 0.026 3.974
27 H 0.069 0.931
28 H 0.067 0.933
29 H 0.052 0.948
30 H 0.394 0.606
31 H 0.089 0.911
32 H 0.089 0.911
33 H 0.268 0.732
34 H 0.139 0.861
35 H 0.135 0.865
36 H 0.131 0.869
37 H 0.072 0.928
38 H 0.030 0.970
39 H 0.076 0.924
40 H 0.077 0.923
41 H 0.074 0.926
42 H 0.030 0.970
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.049 -4.586 -26.845 27.404
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C 0.087 3.913
3 H 0.131 0.869
4 N -0.396 5.396
5 C 0.321 3.679
6 O -0.387 6.387
7 C -0.305 4.305
8 S 0.168 5.832
9 C -0.684 4.684
10 H 0.090 0.910
11 C -0.136 4.136
12 N -0.503 5.503
13 Si 0.745 3.255
14 H -0.203 1.203
15 H -0.208 1.208
16 H -0.197 1.197
17 C -0.033 4.033
18 C -0.166 4.166
19 C 0.084 3.916
20 F -0.116 7.116
21 C -0.168 4.168
22 C -0.136 4.136
23 C -0.009 4.009
24 N -0.227 5.227
25 C -0.119 4.119
26 C -0.120 4.120
27 H 0.088 0.912
28 H 0.086 0.914
29 H 0.071 0.929
30 H 0.230 0.770
31 H 0.108 0.892
32 H 0.107 0.893
33 H 0.078 0.922
34 H 0.157 0.843
35 H 0.153 0.847
36 H 0.149 0.851
37 H 0.091 0.909
38 H 0.049 0.951
39 H 0.095 0.905
40 H 0.096 0.904
41 H 0.092 0.908
42 H 0.049 0.951
Dipole moment (debyes) X Y Z Total
from point charges -3.711 -2.330 -26.144 26.509
hybrid contribution 1.282 -3.134 -0.086 3.387
sum -2.428 -5.464 -26.230 26.903
Atomic orbital electron populations
1.22087 0.93969 1.01827 1.03092 1.19606 0.94259 0.97399 0.80018
0.86879 1.46302 1.69693 1.13895 1.09673 1.20269 0.76798 0.87238
0.83617 1.90700 1.48060 1.15603 1.84328 1.23546 1.03659 1.04903
0.98409 1.85382 1.86290 1.12819 0.98697 1.22875 1.50905 0.98174
0.96407 0.90951 1.24987 0.95115 0.95538 0.97938 1.70019 1.45534
1.13210 1.21542 0.86174 0.78998 0.80218 0.80151 1.20291 1.20765
1.19699 1.19773 0.96472 0.92223 0.94854 1.20887 1.02695 0.94784
0.98258 1.17628 1.00677 0.78460 0.94851 1.91521 1.90366 1.32694
1.97050 1.20985 1.03632 0.95008 0.97157 1.21438 0.98912 0.94284
0.98960 1.18577 0.99891 0.89956 0.92504 1.59584 1.10026 1.03143
1.49947 1.22489 0.94259 1.02741 0.92461 1.22496 0.91765 0.97728
1.00016 0.91183 0.91409 0.92911 0.77032 0.89232 0.89273 0.92206
0.84325 0.84689 0.85141 0.90949 0.95146 0.90507 0.90445 0.90752
0.95141
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.78 9.47 37.16 0.35 -1.42 16
2 C 0.19 2.42 2.48 -69.08 -0.17 2.24 16
3 H 0.11 1.69 7.06 -51.93 -0.37 1.32 16
4 N -0.74 -10.24 5.00 -54.94 -0.27 -10.51 16
5 C 0.53 10.02 7.81 -10.99 -0.09 9.93 16
6 O -0.51 -11.56 15.52 5.56 0.09 -11.47 16
7 C -0.15 -3.14 6.16 36.01 0.22 -2.92 16
8 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16
9 C -0.54 -15.32 9.50 30.94 0.29 -15.03 16
10 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16
11 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16
12 N -0.87 -26.25 13.22 55.49 0.73 -25.52 16
13 Si 0.92 21.52 29.55 -169.99 -5.02 16.49 16
14 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16
15 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16
16 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16
17 C -0.03 -0.33 5.07 -104.43 -0.53 -0.86 16
18 C -0.15 -1.45 9.21 -39.54 -0.36 -1.82 16
19 C 0.10 1.00 7.30 -39.41 -0.29 0.71 16
20 F -0.14 -1.45 17.27 2.25 0.04 -1.41 16
21 C -0.15 -1.21 10.02 -39.54 -0.40 -1.61 16
22 C -0.12 -0.91 8.57 -39.39 -0.34 -1.25 16
23 C 0.09 0.80 4.71 -83.74 -0.39 0.40 16
24 N -0.51 -4.46 4.03 -186.82 -0.75 -5.21 16
25 C 0.03 0.18 9.35 60.07 0.56 0.74 16
26 C 0.03 0.20 9.38 60.06 0.56 0.77 16
27 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16
28 H 0.07 0.70 8.01 -51.93 -0.42 0.28 16
29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16
30 H 0.39 4.43 6.22 -40.82 -0.25 4.17 16
31 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16
32 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16
33 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16
34 H 0.14 1.22 6.08 -52.49 -0.32 0.90 16
35 H 0.14 0.84 8.06 -52.48 -0.42 0.41 16
36 H 0.13 0.78 7.02 -52.49 -0.37 0.41 16
37 H 0.07 0.49 8.01 -51.93 -0.42 0.07 16
38 H 0.03 0.17 7.12 -51.93 -0.37 -0.20 16
39 H 0.08 0.44 8.12 -51.93 -0.42 0.02 16
40 H 0.08 0.52 8.12 -51.93 -0.42 0.10 16
41 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16
42 H 0.03 0.19 7.34 -51.93 -0.38 -0.19 16
LS Contribution 368.98 15.07 5.56 5.56
Total: -1.00 -33.99 368.98 -8.33 -42.32
By element:
Atomic # 1 Polarization: 7.46 SS G_CDS: -5.81 Total: 1.65 kcal
Atomic # 6 Polarization: -7.42 SS G_CDS: -0.67 Total: -8.09 kcal
Atomic # 7 Polarization: -40.95 SS G_CDS: -0.29 Total: -41.24 kcal
Atomic # 8 Polarization: -11.56 SS G_CDS: 0.09 Total: -11.47 kcal
Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.41 kcal
Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal
Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal
Total LS contribution 5.56 Total: 5.56 kcal
Total: -33.99 -8.33 -42.32 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001519158275.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -1.417 kcal
(2) G-P(sol) polarization free energy of solvation -33.992 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.408 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.328 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.320 kcal
(6) G-S(sol) free energy of system = (1) + (5) -43.737 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds