Wall clock time and date at job start Tue Mar 31 2020 16:36:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.08995 * 109.47349 * 2 1
4 4 N 1.46499 * 109.46984 * 119.99932 * 2 1 3
5 5 C 1.34777 * 120.00047 * 275.00028 * 4 2 1
6 6 O 1.21272 * 119.99890 * 359.97438 * 5 4 2
7 7 C 1.50699 * 119.99669 * 180.02562 * 5 4 2
8 8 S 1.81001 * 109.46778 * 179.97438 * 7 5 4
9 9 C 1.76205 * 100.00084 * 179.97438 * 8 7 5
10 10 H 1.07994 * 119.99621 * 0.02562 * 9 8 7
11 11 C 1.38797 * 120.00035 * 179.97438 * 9 8 7
12 12 N 1.31635 * 119.99967 * 0.02562 * 11 9 8
13 13 Si 1.86800 * 119.99969 * 180.02562 * 11 9 8
14 14 H 1.48498 * 109.47163 * 90.00066 * 13 11 9
15 15 H 1.48503 * 109.46967 * 210.00192 * 13 11 9
16 16 H 1.48499 * 109.47219 * 330.00055 * 13 11 9
17 17 C 1.50704 * 109.46682 * 239.99741 * 2 1 3
18 18 C 1.38140 * 120.02374 * 265.20733 * 17 2 1
19 19 C 1.38451 * 120.04571 * 180.28006 * 18 17 2
20 20 F 1.35104 * 119.94889 * 179.74503 * 19 18 17
21 21 C 1.38483 * 120.09672 * 359.77007 * 19 18 17
22 22 C 1.38094 * 120.05326 * 0.02562 * 21 19 18
23 23 C 1.38858 * 120.02221 * 85.00503 * 17 2 1
24 24 N 1.39819 * 120.05152 * 359.96989 * 23 17 2
25 25 C 1.46901 * 110.99791 * 239.72975 * 24 23 17
26 26 C 1.46898 * 110.99821 * 115.77293 * 24 23 17
27 27 H 1.09002 * 109.46909 * 300.00197 * 1 2 3
28 28 H 1.09003 * 109.47644 * 59.99907 * 1 2 3
29 29 H 1.09003 * 109.47661 * 180.02562 * 1 2 3
30 30 H 0.97008 * 120.00253 * 94.99541 * 4 2 1
31 31 H 1.08998 * 109.47249 * 299.99211 * 7 5 4
32 32 H 1.08995 * 109.47546 * 59.99447 * 7 5 4
33 33 H 0.96997 * 119.99996 * 180.02562 * 12 11 9
34 34 H 1.07996 * 119.98108 * 0.02562 * 18 17 2
35 35 H 1.08007 * 119.96807 * 179.97438 * 21 19 18
36 36 H 1.07995 * 120.02679 * 179.97438 * 22 21 19
37 37 H 1.09002 * 109.47401 * 59.99809 * 25 24 23
38 38 H 1.09001 * 109.46874 * 299.99822 * 25 24 23
39 39 H 1.09004 * 109.46970 * 179.97438 * 25 24 23
40 40 H 1.09006 * 109.46770 * 179.97438 * 26 24 23
41 41 H 1.09001 * 109.47456 * 299.99925 * 26 24 23
42 42 H 1.09000 * 109.46814 * 60.00231 * 26 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 7 2.0183 -0.6906 1.1962
5 6 2.1470 -0.0182 2.3571
6 8 1.8590 1.1585 2.4115
7 6 2.6498 -0.7286 3.5874
8 16 2.7113 0.4346 4.9728
9 6 3.3142 -0.6307 6.2403
10 1 3.5236 -1.6670 6.0202
11 6 3.5211 -0.1376 7.5211
12 7 3.2664 1.1258 7.7891
13 14 4.1610 -1.2667 8.8646
14 1 5.6455 -1.2282 8.8782
15 1 3.6420 -0.8143 10.1803
16 1 3.7043 -2.6554 8.6033
17 6 2.0322 -0.7105 -1.2305
18 6 2.3568 -2.0519 -1.1700
19 6 2.8237 -2.7037 -2.2988
20 9 3.1455 -4.0143 -2.2361
21 6 2.9620 -2.0140 -3.4916
22 6 2.6347 -0.6740 -3.5577
23 6 2.1651 -0.0183 -2.4269
24 7 1.8325 1.3383 -2.4916
25 6 0.7665 1.5726 -3.4748
26 6 3.0150 2.1564 -2.7919
27 1 -0.3633 0.5139 0.8900
28 1 -0.3634 0.5138 -0.8900
29 1 -0.3634 -1.0277 0.0005
30 1 2.2489 -1.6318 1.1527
31 1 1.9776 -1.5508 3.8325
32 1 3.6491 -1.1205 3.3979
33 1 3.4113 1.4705 8.6841
34 1 2.2501 -2.5916 -0.2407
35 1 3.3268 -2.5244 -4.3708
36 1 2.7430 -0.1365 -4.4881
37 1 -0.1214 1.0083 -3.1896
38 1 1.1027 1.2478 -4.4595
39 1 0.5270 2.6356 -3.5046
40 1 2.7280 3.2070 -2.8369
41 1 3.7618 2.0165 -2.0103
42 1 3.4326 1.8527 -3.7519
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001519158275.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 16:36:06
Heat of formation + Delta-G solvation = -65.500089 kcal
Electronic energy + Delta-G solvation = -24968.150472 eV
Core-core repulsion = 21181.345007 eV
Total energy + Delta-G solvation = -3786.805465 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 326.121 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-49.93115 -41.52069 -40.35145 -37.55012 -36.45339 -34.57704 -33.09661 -31.23514
-30.50595 -29.61118 -28.48027 -27.65143 -25.55342 -25.09085 -23.00826 -21.93582
-21.30557 -19.93227 -18.73303 -18.06564 -17.60033 -17.42399 -16.87562 -16.79184
-16.69251 -16.42597 -15.93172 -15.78551 -15.55275 -15.14871 -14.95419 -14.72455
-14.45972 -14.34987 -14.00692 -13.94153 -13.52551 -13.31673 -13.17753 -13.15497
-12.88606 -12.83598 -12.68667 -12.60305 -12.53009 -12.32293 -12.01689 -11.71742
-11.13617 -10.94643 -10.29626 -10.26849 -10.01889 -9.55369 -9.45754 -8.65331
-8.33914 -6.11668 -0.01398 0.09466 1.27182 1.42859 1.47109 1.57817
1.62229 2.22389 2.28563 2.42603 2.83653 3.00123 3.12195 3.32389
3.53420 3.69604 3.93979 4.03044 4.14310 4.21965 4.27179 4.37252
4.38183 4.41780 4.50607 4.59951 4.63887 4.66079 4.69053 4.80469
4.89052 5.00464 5.03573 5.06303 5.11906 5.25701 5.28070 5.42691
5.55519 5.66120 5.91447 6.20654 6.30604 6.46186 7.07395 7.22926
8.75297
Molecular weight = 326.12amu
Principal moments of inertia in cm(-1)
A = 0.017535 B = 0.002722 C = 0.002471
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1596.461033 B =10282.607568 C =11328.625163
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C 0.197 3.803
3 H 0.088 0.912
4 N -0.716 5.716
5 C 0.538 3.462
6 O -0.558 6.558
7 C -0.132 4.132
8 S -0.146 6.146
9 C -0.547 4.547
10 H 0.082 0.918
11 C 0.014 3.986
12 N -0.911 5.911
13 Si 0.998 3.002
14 H -0.268 1.268
15 H -0.277 1.277
16 H -0.258 1.258
17 C -0.047 4.047
18 C -0.150 4.150
19 C 0.089 3.911
20 F -0.145 7.145
21 C -0.139 4.139
22 C -0.110 4.110
23 C 0.085 3.915
24 N -0.526 5.526
25 C 0.027 3.973
26 C 0.027 3.973
27 H 0.042 0.958
28 H 0.082 0.918
29 H 0.066 0.934
30 H 0.409 0.591
31 H 0.110 0.890
32 H 0.108 0.892
33 H 0.271 0.729
34 H 0.145 0.855
35 H 0.158 0.842
36 H 0.155 0.845
37 H 0.069 0.931
38 H 0.046 0.954
39 H 0.083 0.917
40 H 0.084 0.916
41 H 0.055 0.945
42 H 0.048 0.952
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.587 -6.663 -28.772 29.647
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C 0.093 3.907
3 H 0.106 0.894
4 N -0.372 5.372
5 C 0.324 3.676
6 O -0.435 6.435
7 C -0.283 4.283
8 S 0.081 5.919
9 C -0.695 4.695
10 H 0.100 0.900
11 C -0.191 4.191
12 N -0.547 5.547
13 Si 0.820 3.180
14 H -0.193 1.193
15 H -0.203 1.203
16 H -0.182 1.182
17 C -0.049 4.049
18 C -0.170 4.170
19 C 0.069 3.931
20 F -0.123 7.123
21 C -0.158 4.158
22 C -0.130 4.130
23 C -0.009 4.009
24 N -0.248 5.248
25 C -0.119 4.119
26 C -0.119 4.119
27 H 0.061 0.939
28 H 0.101 0.899
29 H 0.085 0.915
30 H 0.248 0.752
31 H 0.128 0.872
32 H 0.126 0.874
33 H 0.080 0.920
34 H 0.162 0.838
35 H 0.176 0.824
36 H 0.173 0.827
37 H 0.088 0.912
38 H 0.064 0.936
39 H 0.102 0.898
40 H 0.103 0.897
41 H 0.073 0.927
42 H 0.066 0.934
Dipole moment (debyes) X Y Z Total
from point charges -3.252 -4.447 -28.121 28.655
hybrid contribution 1.116 -2.486 0.336 2.746
sum -2.136 -6.934 -27.785 28.717
Atomic orbital electron populations
1.22011 0.93304 1.02474 1.02453 1.19539 0.94737 0.96301 0.80171
0.89429 1.46072 1.67965 1.14468 1.08663 1.20006 0.76617 0.86607
0.84386 1.90690 1.50320 1.17452 1.85040 1.23391 1.05439 1.03328
0.96122 1.85550 1.86689 1.17085 1.02559 1.23212 1.50917 0.98488
0.96896 0.89991 1.26118 0.95074 0.97211 1.00708 1.70182 1.46779
1.15449 1.22317 0.84959 0.78492 0.78206 0.76356 1.19329 1.20254
1.18238 1.19565 0.98418 0.92586 0.94322 1.20924 1.02664 0.94526
0.98847 1.17767 1.01496 0.78355 0.95439 1.91505 1.90535 1.33162
1.97117 1.21278 1.02165 0.95051 0.97298 1.21646 0.97884 0.94200
0.99275 1.18710 0.99388 0.90281 0.92543 1.59567 1.10848 1.03016
1.51320 1.22533 0.93475 1.03266 0.92644 1.22483 0.91155 0.98116
1.00133 0.93879 0.89945 0.91538 0.75187 0.87212 0.87398 0.91984
0.83774 0.82412 0.82712 0.91231 0.93555 0.89841 0.89738 0.92651
0.93397
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.34 9.47 71.98 0.68 -2.66 16
2 C 0.20 4.91 2.48 44.25 0.11 5.02 16
3 H 0.09 2.70 7.06 -2.39 -0.02 2.68 16
4 N -0.72 -19.44 5.00 -446.11 -2.23 -21.67 16
5 C 0.54 20.35 7.81 87.66 0.68 21.03 16
6 O -0.56 -26.09 15.52 -3.00 -0.05 -26.14 16
7 C -0.13 -5.32 6.16 71.24 0.44 -4.88 16
8 S -0.15 -8.18 20.57 -56.49 -1.16 -9.34 16
9 C -0.55 -31.53 9.50 67.95 0.65 -30.88 16
10 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16
11 C 0.01 0.78 5.49 84.86 0.47 1.25 16
12 N -0.91 -56.27 13.22 21.65 0.29 -55.99 16
13 Si 1.00 43.92 29.55 68.60 2.03 45.95 16
14 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16
15 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16
16 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16
17 C -0.05 -0.94 5.07 -19.74 -0.10 -1.04 16
18 C -0.15 -2.72 9.21 22.30 0.21 -2.52 16
19 C 0.09 1.53 7.30 22.38 0.16 1.69 16
20 F -0.14 -2.78 17.27 44.97 0.78 -2.00 16
21 C -0.14 -1.84 10.02 22.29 0.22 -1.62 16
22 C -0.11 -1.40 8.57 22.39 0.19 -1.21 16
23 C 0.09 1.45 4.71 38.17 0.18 1.63 16
24 N -0.53 -8.57 4.03 -744.98 -3.00 -11.57 16
25 C 0.03 0.30 9.35 127.69 1.19 1.50 16
26 C 0.03 0.39 9.38 127.69 1.20 1.59 16
27 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16
28 H 0.08 1.65 8.01 -2.39 -0.02 1.63 16
29 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16
30 H 0.41 8.59 6.22 -92.70 -0.58 8.02 16
31 H 0.11 3.99 8.14 -2.40 -0.02 3.97 16
32 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16
33 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16
34 H 0.14 2.30 6.08 -2.91 -0.02 2.28 16
35 H 0.16 1.36 8.06 -2.91 -0.02 1.33 16
36 H 0.16 1.21 7.02 -2.91 -0.02 1.19 16
37 H 0.07 0.82 8.01 -2.39 -0.02 0.80 16
38 H 0.05 0.37 7.12 -2.39 -0.02 0.36 16
39 H 0.08 0.82 8.12 -2.38 -0.02 0.80 16
40 H 0.08 1.05 8.12 -2.38 -0.02 1.03 16
41 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16
42 H 0.05 0.50 7.34 -2.39 -0.02 0.48 16
Total: -1.00 -75.90 368.98 3.40 -72.51
By element:
Atomic # 1 Polarization: 18.88 SS G_CDS: 0.46 Total: 19.34 kcal
Atomic # 6 Polarization: -17.37 SS G_CDS: 6.28 Total: -11.09 kcal
Atomic # 7 Polarization: -84.28 SS G_CDS: -4.94 Total: -89.22 kcal
Atomic # 8 Polarization: -26.09 SS G_CDS: -0.05 Total: -26.14 kcal
Atomic # 9 Polarization: -2.78 SS G_CDS: 0.78 Total: -2.00 kcal
Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal
Atomic # 16 Polarization: -8.18 SS G_CDS: -1.16 Total: -9.34 kcal
Total: -75.90 3.40 -72.51 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001519158275.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 7.006 kcal
(2) G-P(sol) polarization free energy of solvation -75.902 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.896 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.396 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.506 kcal
(6) G-S(sol) free energy of system = (1) + (5) -65.500 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds