Wall clock time and date at job start Tue Mar 31 2020 16:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46925 * 2 1 4 4 C 1.50698 * 109.47096 * 239.99992 * 2 1 3 5 5 H 1.08003 * 119.99937 * 239.99930 * 4 2 1 6 6 C 1.37875 * 120.00086 * 60.00051 * 4 2 1 7 7 N 1.31518 * 119.99995 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00295 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46692 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47299 * 119.99851 * 8 6 4 11 11 H 1.48504 * 109.47012 * 240.00328 * 8 6 4 12 12 N 1.46497 * 109.46817 * 120.00150 * 2 1 3 13 13 C 1.34776 * 119.99775 * 274.99788 * 12 2 1 14 14 O 1.21670 * 120.00410 * 0.02562 * 13 12 2 15 15 C 1.46953 * 120.00005 * 180.02562 * 13 12 2 16 16 C 1.36449 * 126.77075 * 294.16736 * 15 13 12 17 17 N 1.35448 * 109.72580 * 179.97438 * 16 15 13 18 18 H 0.97002 * 124.79479 * 179.97438 * 17 16 15 19 19 C 1.37986 * 110.40421 * 359.97438 * 17 16 15 20 20 C 1.39178 * 133.12636 * 180.02562 * 19 17 16 21 21 C 1.37875 * 120.18644 * 180.02562 * 20 19 17 22 22 C 1.38481 * 120.77513 * 359.97438 * 21 20 19 23 23 C 1.38946 * 120.15715 * 359.97438 * 22 21 20 24 24 C 1.48298 * 120.28348 * 180.29191 * 23 22 21 25 25 N 1.34103 * 126.68252 * 172.78944 * 24 23 22 26 26 N 1.28977 * 107.26029 * 179.97438 * 25 24 23 27 27 N 1.28721 * 108.96553 * 359.97438 * 26 25 24 28 28 H 0.96999 * 125.33578 * 180.02562 * 27 26 25 29 29 N 1.28876 * 109.33092 * 359.75546 * 27 26 25 30 30 C 1.40262 * 107.44089 * 0.02562 * 19 17 16 31 31 H 1.09000 * 109.47312 * 300.00069 * 1 2 3 32 32 H 1.08996 * 109.47135 * 60.00243 * 1 2 3 33 33 H 1.08996 * 109.46925 * 179.97438 * 1 2 3 34 34 H 0.97001 * 120.00118 * 179.97438 * 7 6 4 35 35 H 0.96999 * 120.00549 * 95.00639 * 12 2 1 36 36 H 1.07999 * 125.13680 * 0.02562 * 16 15 13 37 37 H 1.08005 * 119.90352 * 359.97438 * 20 19 17 38 38 H 1.08000 * 119.61058 * 179.97438 * 21 20 19 39 39 H 1.08002 * 119.92010 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3214 -1.1203 -4.0080 9 1 3.1465 -2.2870 -3.6037 10 1 1.1661 -1.5866 -4.8161 11 1 3.1467 -0.1873 -4.8165 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0183 2.3571 14 8 1.8573 1.1622 2.4119 15 6 2.6373 -0.7109 3.5569 16 6 2.0102 -1.7165 4.2330 17 7 2.7693 -2.1018 5.2866 18 1 2.5304 -2.8015 5.9145 19 6 3.9305 -1.3583 5.3403 20 6 5.0208 -1.3578 6.2053 21 6 6.0633 -0.4778 6.0063 22 6 6.0444 0.4154 4.9482 23 6 4.9680 0.4342 4.0698 24 6 4.9478 1.3852 2.9320 25 7 4.0499 1.4245 1.9367 26 7 4.3867 2.3940 1.1555 27 7 5.4479 2.9557 1.6195 28 1 5.9045 3.7110 1.2172 29 7 5.8054 2.3609 2.7055 30 6 3.9028 -0.4571 4.2659 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 0.7088 1.1613 -3.4844 35 1 2.2491 -1.6318 1.1526 36 1 1.0536 -2.1417 3.9678 37 1 5.0499 -2.0483 7.0354 38 1 6.9046 -0.4851 6.6835 39 1 6.8686 1.0985 4.8050 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589788376.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:49:12 Heat of formation + Delta-G solvation = 168.412710 kcal Electronic energy + Delta-G solvation = -27691.061083 eV Core-core repulsion = 23831.167599 eV Total energy + Delta-G solvation = -3859.893484 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.123 amu Computer time = 2.61 seconds Orbital eigenvalues (eV) -43.84789 -41.30964 -38.05892 -37.09467 -34.42853 -33.82659 -33.13923 -32.07912 -31.32676 -29.51630 -29.30173 -28.04215 -25.05455 -24.49706 -23.96992 -22.81844 -21.82253 -21.59031 -20.17655 -19.03424 -18.62127 -17.70947 -16.56539 -16.55204 -16.39095 -15.63303 -15.20918 -14.98383 -14.59553 -14.38414 -14.12394 -13.84628 -13.76377 -13.09588 -12.70557 -12.58740 -12.13189 -12.02673 -11.74651 -11.60243 -11.38718 -11.18983 -10.95485 -10.86079 -10.69803 -10.60621 -10.51206 -10.19852 -10.07668 -10.00867 -9.26373 -8.78701 -8.69113 -8.33254 -8.32664 -7.62562 -7.42246 -5.93616 -3.99821 0.68151 1.51637 1.73484 2.50908 2.71036 2.83097 3.02741 3.32887 3.40415 3.43682 3.79997 3.97004 4.11198 4.43996 4.63214 4.67639 4.80819 4.92632 5.13531 5.18131 5.38483 5.47193 5.55674 5.60424 5.81608 5.96313 6.05015 6.15999 6.37693 6.47780 6.57897 6.67709 6.86993 7.01270 7.06501 7.18883 7.41236 7.42489 7.78218 7.89348 7.98852 8.21939 8.39368 8.78020 9.00874 9.11019 9.55869 9.72583 11.12470 Molecular weight = 326.12amu Principal moments of inertia in cm(-1) A = 0.014044 B = 0.004493 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.245465 B = 6230.912747 C = 7244.838908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.270 3.730 3 H 0.057 0.943 4 C -0.521 4.521 5 H 0.057 0.943 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.894 3.106 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.285 1.285 12 N -0.702 5.702 13 C 0.594 3.406 14 O -0.536 6.536 15 C -0.192 4.192 16 C 0.085 3.915 17 N -0.584 5.584 18 H 0.418 0.582 19 C 0.089 3.911 20 C -0.111 4.111 21 C -0.106 4.106 22 C -0.105 4.105 23 C 0.041 3.959 24 C 0.195 3.805 25 N -0.205 5.205 26 N -0.031 5.031 27 N -0.244 5.244 28 H 0.469 0.531 29 N -0.308 5.308 30 C -0.046 4.046 31 H 0.013 0.987 32 H 0.087 0.913 33 H 0.022 0.978 34 H 0.260 0.740 35 H 0.382 0.618 36 H 0.180 0.820 37 H 0.124 0.876 38 H 0.132 0.868 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.152 -4.274 17.401 20.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.168 3.832 3 H 0.075 0.925 4 C -0.560 4.560 5 H 0.075 0.925 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.722 3.278 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.211 1.211 12 N -0.349 5.349 13 C 0.378 3.622 14 O -0.413 6.413 15 C -0.202 4.202 16 C -0.045 4.045 17 N -0.187 5.187 18 H 0.255 0.745 19 C -0.017 4.017 20 C -0.133 4.133 21 C -0.125 4.125 22 C -0.127 4.127 23 C 0.037 3.963 24 C -0.084 4.084 25 N -0.078 5.078 26 N -0.027 5.027 27 N -0.087 5.087 28 H 0.321 0.679 29 N -0.160 5.160 30 C -0.053 4.053 31 H 0.032 0.968 32 H 0.105 0.895 33 H 0.041 0.959 34 H 0.070 0.930 35 H 0.213 0.787 36 H 0.197 0.803 37 H 0.142 0.858 38 H 0.150 0.850 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 8.527 -3.107 16.740 19.042 hybrid contribution 0.728 -0.924 -0.496 1.277 sum 9.255 -4.031 16.243 19.125 Atomic orbital electron populations 1.22094 0.99201 0.98634 1.00633 1.18636 0.90164 0.94589 0.79778 0.92487 1.21287 1.31455 1.12679 0.90557 0.92476 1.24833 0.95103 0.95002 0.98721 1.69927 1.36448 1.22640 1.23233 0.86515 0.78521 0.79573 0.83156 1.19935 1.21078 1.21118 1.46298 1.65528 1.12953 1.10137 1.16790 0.77477 0.86040 0.81937 1.90698 1.50486 1.15281 1.84805 1.20620 0.96321 1.01861 1.01437 1.21991 0.97289 0.96421 0.88765 1.41399 1.16576 1.33812 1.26864 0.74496 1.18014 0.89724 0.95672 0.98327 1.20107 0.92466 1.01508 0.99182 1.20651 0.98186 0.95655 0.98040 1.20937 0.97460 0.99790 0.94497 1.16567 0.94549 0.93408 0.91795 1.23653 0.90786 0.95900 0.98083 1.76718 1.18555 1.11422 1.01104 1.79233 0.99540 1.04404 1.19537 1.47809 1.19368 1.26309 1.15227 0.67855 1.74705 1.26112 1.10504 1.04715 1.18566 0.94132 0.96806 0.95774 0.96808 0.89469 0.95905 0.92996 0.78681 0.80269 0.85832 0.85039 0.84892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.79 9.26 37.16 0.34 -3.45 16 2 C 0.27 7.16 2.56 -69.08 -0.18 6.99 16 3 H 0.06 1.76 7.58 -51.93 -0.39 1.36 16 4 C -0.52 -14.38 8.73 -34.44 -0.30 -14.68 16 5 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 6 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 7 N -0.88 -25.66 11.32 55.43 0.63 -25.03 16 8 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 9 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 N -0.70 -15.71 5.07 -56.16 -0.28 -16.00 16 13 C 0.59 12.99 5.08 -12.73 -0.06 12.92 16 14 O -0.54 -13.80 14.36 5.22 0.07 -13.72 16 15 C -0.19 -3.36 6.02 -103.35 -0.62 -3.98 16 16 C 0.08 1.07 11.80 -16.60 -0.20 0.88 16 17 N -0.58 -5.88 5.99 -10.48 -0.06 -5.94 16 18 H 0.42 2.46 8.96 -40.82 -0.37 2.10 16 19 C 0.09 1.10 7.25 -83.98 -0.61 0.50 16 20 C -0.11 -1.09 10.06 -39.37 -0.40 -1.49 16 21 C -0.11 -1.05 10.00 -39.62 -0.40 -1.44 16 22 C -0.11 -1.33 9.69 -39.23 -0.38 -1.71 16 23 C 0.04 0.67 5.89 -104.73 -0.62 0.05 16 24 C 0.19 3.68 7.93 -156.28 -1.24 2.44 16 25 N -0.20 -4.50 6.81 32.13 0.22 -4.28 16 26 N -0.03 -0.64 13.47 60.35 0.81 0.17 16 27 N -0.24 -3.75 7.90 60.35 0.48 -3.27 16 28 H 0.47 4.68 8.96 -340.36 -3.05 1.63 16 29 N -0.31 -5.02 12.11 32.15 0.39 -4.63 16 30 C -0.05 -0.75 6.19 -104.71 -0.65 -1.40 16 31 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 33 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.38 7.67 8.52 -40.82 -0.35 7.32 16 36 H 0.18 1.74 8.06 -52.49 -0.42 1.32 16 37 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 38 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 39 H 0.13 1.49 7.90 -52.49 -0.41 1.07 16 LS Contribution 338.14 15.07 5.10 5.10 Total: -1.00 -37.36 338.14 -9.61 -46.98 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -6.54 Total: 6.90 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: -5.40 Total: -2.65 kcal Atomic # 7 Polarization: -61.16 SS G_CDS: 2.18 Total: -58.98 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: 0.07 Total: -13.72 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -37.36 -9.61 -46.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589788376.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 215.389 kcal (2) G-P(sol) polarization free energy of solvation -37.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 178.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 168.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.61 seconds