Wall clock time and date at job start Tue Mar 31 2020 16:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46925 * 2 1 4 4 C 1.50698 * 109.47096 * 239.99992 * 2 1 3 5 5 H 1.08003 * 119.99937 * 239.99930 * 4 2 1 6 6 C 1.37875 * 120.00086 * 60.00051 * 4 2 1 7 7 N 1.31518 * 119.99995 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00295 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46692 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47299 * 119.99851 * 8 6 4 11 11 H 1.48504 * 109.47012 * 240.00328 * 8 6 4 12 12 N 1.46497 * 109.46817 * 120.00150 * 2 1 3 13 13 C 1.34776 * 119.99775 * 274.99788 * 12 2 1 14 14 O 1.21670 * 120.00410 * 0.02562 * 13 12 2 15 15 C 1.46953 * 120.00005 * 180.02562 * 13 12 2 16 16 C 1.36449 * 126.77075 * 294.16736 * 15 13 12 17 17 N 1.35448 * 109.72580 * 179.97438 * 16 15 13 18 18 H 0.97002 * 124.79479 * 179.97438 * 17 16 15 19 19 C 1.37986 * 110.40421 * 359.97438 * 17 16 15 20 20 C 1.39178 * 133.12636 * 180.02562 * 19 17 16 21 21 C 1.37875 * 120.18644 * 180.02562 * 20 19 17 22 22 C 1.38481 * 120.77513 * 359.97438 * 21 20 19 23 23 C 1.38946 * 120.15715 * 359.97438 * 22 21 20 24 24 C 1.48298 * 120.28348 * 180.29191 * 23 22 21 25 25 N 1.34103 * 126.68252 * 172.78944 * 24 23 22 26 26 N 1.28977 * 107.26029 * 179.97438 * 25 24 23 27 27 N 1.28721 * 108.96553 * 359.97438 * 26 25 24 28 28 H 0.96999 * 125.33578 * 180.02562 * 27 26 25 29 29 N 1.28876 * 109.33092 * 359.75546 * 27 26 25 30 30 C 1.40262 * 107.44089 * 0.02562 * 19 17 16 31 31 H 1.09000 * 109.47312 * 300.00069 * 1 2 3 32 32 H 1.08996 * 109.47135 * 60.00243 * 1 2 3 33 33 H 1.08996 * 109.46925 * 179.97438 * 1 2 3 34 34 H 0.97001 * 120.00118 * 179.97438 * 7 6 4 35 35 H 0.96999 * 120.00549 * 95.00639 * 12 2 1 36 36 H 1.07999 * 125.13680 * 0.02562 * 16 15 13 37 37 H 1.08005 * 119.90352 * 359.97438 * 20 19 17 38 38 H 1.08000 * 119.61058 * 179.97438 * 21 20 19 39 39 H 1.08002 * 119.92010 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3214 -1.1203 -4.0080 9 1 3.1465 -2.2870 -3.6037 10 1 1.1661 -1.5866 -4.8161 11 1 3.1467 -0.1873 -4.8165 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0183 2.3571 14 8 1.8573 1.1622 2.4119 15 6 2.6373 -0.7109 3.5569 16 6 2.0102 -1.7165 4.2330 17 7 2.7693 -2.1018 5.2866 18 1 2.5304 -2.8015 5.9145 19 6 3.9305 -1.3583 5.3403 20 6 5.0208 -1.3578 6.2053 21 6 6.0633 -0.4778 6.0063 22 6 6.0444 0.4154 4.9482 23 6 4.9680 0.4342 4.0698 24 6 4.9478 1.3852 2.9320 25 7 4.0499 1.4245 1.9367 26 7 4.3867 2.3940 1.1555 27 7 5.4479 2.9557 1.6195 28 1 5.9045 3.7110 1.2172 29 7 5.8054 2.3609 2.7055 30 6 3.9028 -0.4571 4.2659 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 0.7088 1.1613 -3.4844 35 1 2.2491 -1.6318 1.1526 36 1 1.0536 -2.1417 3.9678 37 1 5.0499 -2.0483 7.0354 38 1 6.9046 -0.4851 6.6835 39 1 6.8686 1.0985 4.8050 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589788376.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:48:58 Heat of formation + Delta-G solvation = 139.543008 kcal Electronic energy + Delta-G solvation = -27692.312967 eV Core-core repulsion = 23831.167599 eV Total energy + Delta-G solvation = -3861.145368 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.123 amu Computer time = 22.14 seconds Orbital eigenvalues (eV) -45.22704 -42.29546 -39.75255 -38.05584 -36.39937 -35.19092 -34.40682 -34.05849 -32.55563 -30.88286 -30.45305 -29.50621 -27.22930 -25.73253 -25.29269 -24.27927 -22.96798 -22.57475 -21.97173 -20.45103 -20.17848 -18.85614 -18.22969 -17.94464 -17.39411 -16.97981 -16.92925 -16.54903 -15.97279 -15.47572 -15.35901 -15.21642 -15.02473 -14.57097 -14.49743 -14.12219 -13.59894 -13.47906 -13.05334 -12.98583 -12.89515 -12.77664 -12.66372 -12.52879 -12.20073 -12.19012 -12.13218 -12.03582 -11.68066 -11.62465 -10.93633 -10.57211 -10.46589 -10.28698 -9.37218 -9.25208 -8.59675 -8.07479 -6.22292 -0.34514 0.33693 0.62443 1.28863 1.43375 1.44150 1.56176 1.56464 1.64408 2.16221 2.29495 2.45919 2.88043 2.92723 3.14302 3.23984 3.41998 3.82682 4.03927 4.21975 4.26328 4.45281 4.52773 4.61248 4.63878 4.80998 4.88047 4.94782 5.05376 5.06151 5.26475 5.47408 5.53210 5.57478 5.61404 5.65014 5.75174 5.86526 5.90759 6.09134 6.15964 6.28385 6.70413 6.87738 7.33479 7.37764 7.44634 7.99600 8.98927 Molecular weight = 326.12amu Principal moments of inertia in cm(-1) A = 0.014044 B = 0.004493 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.245465 B = 6230.912747 C = 7244.838908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.282 3.718 3 H 0.003 0.997 4 C -0.535 4.535 5 H 0.061 0.939 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.965 3.035 9 H -0.265 1.265 10 H -0.276 1.276 11 H -0.286 1.286 12 N -0.701 5.701 13 C 0.601 3.399 14 O -0.586 6.586 15 C -0.257 4.257 16 C 0.125 3.875 17 N -0.557 5.557 18 H 0.443 0.557 19 C 0.083 3.917 20 C -0.086 4.086 21 C -0.103 4.103 22 C -0.094 4.094 23 C -0.012 4.012 24 C 0.184 3.816 25 N -0.247 5.247 26 N -0.077 5.077 27 N -0.215 5.215 28 H 0.487 0.513 29 N -0.296 5.296 30 C -0.075 4.075 31 H 0.008 0.992 32 H 0.062 0.938 33 H 0.039 0.961 34 H 0.262 0.738 35 H 0.393 0.607 36 H 0.211 0.789 37 H 0.171 0.829 38 H 0.175 0.825 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.807 -7.387 20.255 24.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.179 3.821 3 H 0.021 0.979 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.790 3.210 9 H -0.189 1.189 10 H -0.201 1.201 11 H -0.212 1.212 12 N -0.348 5.348 13 C 0.388 3.612 14 O -0.465 6.465 15 C -0.267 4.267 16 C -0.008 4.008 17 N -0.160 5.160 18 H 0.285 0.715 19 C -0.024 4.024 20 C -0.107 4.107 21 C -0.121 4.121 22 C -0.116 4.116 23 C -0.016 4.016 24 C -0.095 4.095 25 N -0.119 5.119 26 N -0.072 5.072 27 N -0.064 5.064 28 H 0.345 0.655 29 N -0.149 5.149 30 C -0.081 4.081 31 H 0.028 0.972 32 H 0.081 0.919 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.226 0.774 36 H 0.227 0.773 37 H 0.189 0.811 38 H 0.192 0.808 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 10.203 -6.267 19.640 23.002 hybrid contribution 0.313 0.066 -1.206 1.248 sum 10.516 -6.201 18.434 22.110 Atomic orbital electron populations 1.21893 0.98921 0.99076 0.99127 1.18145 0.90233 0.92236 0.81511 0.97859 1.21541 1.31657 1.12860 0.91270 0.92060 1.25697 0.95139 0.95632 1.01891 1.70082 1.37421 1.24015 1.24016 0.85414 0.78126 0.78457 0.78990 1.18908 1.20128 1.21174 1.46056 1.65972 1.13289 1.09499 1.17312 0.75736 0.85426 0.82719 1.90646 1.52338 1.17748 1.85808 1.20236 0.99123 1.05575 1.01810 1.22281 0.97303 0.93633 0.87567 1.41324 1.15254 1.33367 1.26100 0.71489 1.18257 0.91073 0.95228 0.97800 1.20674 0.90430 1.00834 0.98750 1.21154 0.99479 0.94218 0.97298 1.21222 0.96179 0.99997 0.94157 1.16924 0.96902 0.94884 0.92915 1.24350 0.90174 0.96603 0.98394 1.76634 1.20276 1.12445 1.02524 1.79138 1.01540 1.05670 1.20894 1.47826 1.18002 1.25988 1.14588 0.65516 1.74660 1.25567 1.10071 1.04595 1.18823 0.93874 0.98214 0.97233 0.97242 0.91908 0.94233 0.92889 0.77395 0.77270 0.81137 0.80765 0.84099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.10 9.26 71.98 0.67 -6.43 16 2 C 0.28 15.83 2.56 44.25 0.11 15.95 16 3 H 0.00 0.23 7.58 -2.39 -0.02 0.21 16 4 C -0.53 -30.47 8.73 25.60 0.22 -30.25 16 5 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 6 C 0.02 0.89 5.30 84.65 0.45 1.34 16 7 N -0.92 -55.24 11.32 21.45 0.24 -55.00 16 8 Si 0.96 44.56 29.54 68.60 2.03 46.58 16 9 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 10 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 12 N -0.70 -32.90 5.07 -449.81 -2.28 -35.18 16 13 C 0.60 27.74 5.08 86.53 0.44 28.18 16 14 O -0.59 -32.51 14.36 -4.25 -0.06 -32.57 16 15 C -0.26 -9.08 6.02 -19.04 -0.11 -9.19 16 16 C 0.13 2.87 11.80 83.72 0.99 3.86 16 17 N -0.56 -8.95 5.99 -187.09 -1.12 -10.07 16 18 H 0.44 2.82 8.96 -92.71 -0.83 1.99 16 19 C 0.08 1.77 7.25 38.89 0.28 2.06 16 20 C -0.09 -1.22 10.06 22.41 0.23 -1.00 16 21 C -0.10 -1.54 10.00 22.24 0.22 -1.32 16 22 C -0.09 -2.19 9.69 22.50 0.22 -1.97 16 23 C -0.01 -0.41 5.89 -19.94 -0.12 -0.53 16 24 C 0.18 7.30 7.93 137.30 1.09 8.39 16 25 N -0.25 -11.70 6.81 -52.25 -0.36 -12.06 16 26 N -0.08 -3.43 13.47 37.02 0.50 -2.93 16 27 N -0.22 -7.05 7.90 37.02 0.29 -6.76 16 28 H 0.49 10.40 8.96 -347.53 -3.12 7.28 16 29 N -0.30 -10.02 12.11 -52.19 -0.63 -10.65 16 30 C -0.07 -2.42 6.19 -19.92 -0.12 -2.54 16 31 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.06 3.69 6.07 -2.39 -0.01 3.68 16 33 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 35 H 0.39 16.28 8.52 -92.71 -0.79 15.49 16 36 H 0.21 3.40 8.06 -2.91 -0.02 3.38 16 37 H 0.17 0.90 8.06 -2.91 -0.02 0.88 16 38 H 0.17 1.17 8.06 -2.91 -0.02 1.14 16 39 H 0.14 2.91 7.90 -2.91 -0.02 2.89 16 Total: -1.00 -89.97 338.14 -0.40 -90.37 By element: Atomic # 1 Polarization: 25.30 SS G_CDS: -3.57 Total: 21.73 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: 4.56 Total: 6.54 kcal Atomic # 7 Polarization: -129.30 SS G_CDS: -3.35 Total: -132.65 kcal Atomic # 8 Polarization: -32.51 SS G_CDS: -0.06 Total: -32.57 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -89.97 -0.40 -90.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589788376.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 229.911 kcal (2) G-P(sol) polarization free energy of solvation -89.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 22.14 seconds