Wall clock time and date at job start Tue Mar 31 2020 16:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46927 * 2 1 4 4 N 1.46491 * 109.47550 * 119.99957 * 2 1 3 5 5 C 1.36937 * 120.00460 * 275.00438 * 4 2 1 6 6 H 1.08008 * 119.99671 * 0.02562 * 5 4 2 7 7 C 1.38808 * 120.00207 * 179.71967 * 5 4 2 8 8 N 1.31621 * 120.00232 * 0.27850 * 7 5 4 9 9 Si 1.86808 * 119.99794 * 180.27573 * 7 5 4 10 10 H 1.48504 * 109.46829 * 90.00355 * 9 7 5 11 11 H 1.48501 * 109.47149 * 210.00111 * 9 7 5 12 12 H 1.48492 * 109.47017 * 330.00164 * 9 7 5 13 13 C 1.53005 * 109.47513 * 240.00334 * 2 1 3 14 14 H 1.09003 * 109.58030 * 51.76749 * 13 2 1 15 15 C 1.53191 * 109.58361 * 291.48523 * 13 2 1 16 16 C 1.53037 * 109.30988 * 185.57483 * 15 13 2 17 17 C 1.53041 * 109.53963 * 61.36424 * 16 15 13 18 18 C 1.53192 * 109.31368 * 298.63424 * 17 16 15 19 19 N 1.46921 * 109.58843 * 172.18951 * 13 2 1 20 20 C 1.34778 * 120.63313 * 353.40208 * 19 13 2 21 21 O 1.21741 * 119.99661 * 6.75104 * 20 19 13 22 22 C 1.46289 * 120.00139 * 186.75175 * 20 19 13 23 23 S 1.75824 * 125.46492 * 16.17009 * 22 20 19 24 24 C 1.70601 * 91.60895 * 179.97438 * 23 22 20 25 25 C 1.33732 * 111.03632 * 0.02562 * 24 23 22 26 26 C 1.36924 * 125.46510 * 195.86179 * 22 20 19 27 27 F 1.35101 * 123.40560 * 0.02562 * 26 22 20 28 28 H 1.08994 * 109.47715 * 324.91373 * 1 2 3 29 29 H 1.09004 * 109.47007 * 84.92025 * 1 2 3 30 30 H 1.09001 * 109.46571 * 204.91361 * 1 2 3 31 31 H 0.97002 * 120.00448 * 94.99885 * 4 2 1 32 32 H 0.96998 * 119.99927 * 179.97438 * 8 7 5 33 33 H 1.08999 * 109.49602 * 305.52547 * 15 13 2 34 34 H 1.09000 * 109.49792 * 65.58768 * 15 13 2 35 35 H 1.09003 * 109.46300 * 181.38518 * 16 15 13 36 36 H 1.09001 * 109.46152 * 301.34593 * 16 15 13 37 37 H 1.09002 * 109.49856 * 58.58167 * 17 16 15 38 38 H 1.08997 * 109.49984 * 178.65042 * 17 16 15 39 39 H 1.08996 * 109.58927 * 174.42066 * 18 17 16 40 40 H 1.09001 * 109.58266 * 294.84876 * 18 17 16 41 41 H 1.07994 * 124.47943 * 179.97438 * 24 23 22 42 42 H 1.08002 * 122.45082 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 1.1961 5 6 2.1492 -0.0075 2.3757 6 1 1.8918 1.0403 2.4244 7 6 2.6064 -0.6633 3.5104 8 7 2.9196 -1.9403 3.4513 9 14 2.7775 0.2667 5.1215 10 1 1.5061 0.1748 5.8835 11 1 3.8782 -0.3276 5.9217 12 1 3.0839 1.6922 4.8400 13 6 2.0401 -0.7212 -1.2493 14 1 1.5627 -0.3006 -2.1344 15 6 1.7129 -2.2144 -1.1497 16 6 2.3458 -2.9511 -2.3324 17 6 3.8664 -2.7855 -2.2842 18 6 4.2180 -1.2987 -2.3966 19 7 3.4972 -0.5619 -1.3496 20 6 4.1601 0.2447 -0.4972 21 8 3.5734 0.7529 0.4406 22 6 5.5846 0.5095 -0.6991 23 16 6.4793 0.2024 -2.1811 24 6 7.9242 0.7860 -1.4867 25 6 7.7251 1.1798 -0.2243 26 6 6.4337 1.0419 0.2339 27 9 6.0449 1.3924 1.4794 28 1 -0.3634 0.8408 0.5907 29 1 -0.3633 0.0910 -1.0237 30 1 -0.3632 -0.9321 0.4329 31 1 2.2491 -1.6317 1.1526 32 1 3.2394 -2.3985 4.2442 33 1 2.1122 -2.6129 -0.2171 34 1 0.6318 -2.3522 -1.1710 35 1 2.0939 -4.0102 -2.2775 36 1 1.9647 -2.5354 -3.2652 37 1 4.2455 -3.1786 -1.3408 38 1 4.3183 -3.3303 -3.1131 39 1 5.2917 -1.1661 -2.2635 40 1 3.9203 -0.9260 -3.3766 41 1 8.8740 0.8306 -1.9985 42 1 8.5181 1.5809 0.3895 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752146779.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:45:42 Heat of formation + Delta-G solvation = 18.590298 kcal Electronic energy + Delta-G solvation = -27615.045611 eV Core-core repulsion = 23831.886578 eV Total energy + Delta-G solvation = -3783.159032 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.121 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -48.40753 -40.15320 -37.54093 -36.51602 -35.22869 -32.54625 -32.12394 -29.80736 -29.37590 -28.02304 -25.52223 -24.20731 -23.88079 -23.15157 -21.32791 -20.57917 -19.28252 -19.12358 -17.60875 -16.92628 -16.39345 -15.88555 -15.54539 -15.25145 -14.70379 -14.56220 -14.31439 -14.19732 -13.92601 -13.83778 -13.48605 -13.14345 -12.93460 -12.73201 -12.41979 -12.27091 -12.06392 -11.83568 -11.55401 -11.49738 -11.20830 -11.10534 -10.72068 -10.60447 -10.56501 -10.46933 -10.24585 -10.02978 -9.71913 -9.27893 -8.83010 -8.56883 -8.37314 -8.23445 -7.92621 -6.51443 -5.42162 -2.63620 0.55391 1.40873 1.80736 2.36324 3.28735 3.63696 3.68702 3.72737 3.78428 4.44660 4.73166 4.86955 4.91129 5.02294 5.04016 5.14131 5.31949 5.33222 5.44772 5.49067 5.64625 5.72877 5.78361 5.83864 5.90719 5.94001 6.04346 6.10115 6.18288 6.27756 6.33088 6.44205 6.47290 6.54108 6.63553 6.89694 7.05481 7.09570 7.42803 7.89289 8.08434 8.75729 8.90924 9.88590 10.44373 10.80384 11.82492 Molecular weight = 326.12amu Principal moments of inertia in cm(-1) A = 0.010441 B = 0.007106 C = 0.004824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2681.057183 B = 3939.458673 C = 5802.483681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.166 3.834 3 H 0.082 0.918 4 N -0.702 5.702 5 C -0.174 4.174 6 H 0.064 0.936 7 C -0.029 4.029 8 N -0.948 5.948 9 Si 0.896 3.104 10 H -0.297 1.297 11 H -0.297 1.297 12 H -0.285 1.285 13 C 0.150 3.850 14 H 0.065 0.935 15 C -0.135 4.135 16 C -0.116 4.116 17 C -0.132 4.132 18 C 0.106 3.894 19 N -0.609 5.609 20 C 0.562 3.438 21 O -0.423 6.423 22 C -0.295 4.295 23 S 0.245 5.755 24 C -0.248 4.248 25 C -0.175 4.175 26 C 0.155 3.845 27 F -0.098 7.098 28 H 0.046 0.954 29 H 0.032 0.968 30 H 0.052 0.948 31 H 0.378 0.622 32 H 0.246 0.754 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.170 0.830 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.151 0.967 -19.104 20.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.056 3.944 3 H 0.099 0.901 4 N -0.344 5.344 5 C -0.305 4.305 6 H 0.082 0.918 7 C -0.222 4.222 8 N -0.601 5.601 9 Si 0.730 3.270 10 H -0.226 1.226 11 H -0.224 1.224 12 H -0.211 1.211 13 C 0.047 3.953 14 H 0.083 0.917 15 C -0.173 4.173 16 C -0.154 4.154 17 C -0.170 4.170 18 C -0.020 4.020 19 N -0.346 5.346 20 C 0.347 3.653 21 O -0.293 6.293 22 C -0.416 4.416 23 S 0.511 5.489 24 C -0.384 4.384 25 C -0.207 4.207 26 C 0.122 3.878 27 F -0.076 7.076 28 H 0.065 0.935 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.214 0.786 32 H 0.056 0.944 33 H 0.101 0.899 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.187 0.813 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 6.511 0.891 -19.759 20.823 hybrid contribution 0.957 0.648 2.604 2.849 sum 7.467 1.539 -17.155 18.773 Atomic orbital electron populations 1.22630 0.99929 1.01731 0.98596 1.20747 0.90381 0.97824 0.85427 0.90055 1.42438 1.77301 1.09612 1.05041 1.19069 1.32143 0.93105 0.86233 0.91803 1.24529 1.04089 0.95997 0.97577 1.69635 1.53905 1.08578 1.27974 0.86288 0.76780 0.79041 0.84923 1.22551 1.22411 1.21100 1.21678 0.78202 0.95991 0.99425 0.91714 1.21997 1.00843 0.95155 0.99323 1.21502 0.94720 1.00491 0.98642 1.21883 0.97203 0.95087 1.02860 1.21977 0.95561 0.92910 0.91516 1.47654 1.07659 1.46172 1.33069 1.16786 0.83804 0.81726 0.82982 1.91205 1.64346 1.48180 1.25545 1.25049 1.00285 1.16669 0.99584 1.83177 0.96652 1.56473 1.12578 1.25542 1.06874 1.05844 1.00157 1.19833 0.96319 1.07260 0.97243 1.16924 0.91676 0.97900 0.81317 1.91646 1.91141 1.88513 1.36273 0.93483 0.94899 0.92888 0.78582 0.94386 0.89904 0.90956 0.91877 0.92311 0.90903 0.91102 0.90637 0.91307 0.81294 0.83296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.14 8.99 37.16 0.33 -2.81 16 2 C 0.17 3.48 1.88 -67.93 -0.13 3.35 16 3 H 0.08 1.89 5.81 -52.51 -0.30 1.59 16 4 N -0.70 -18.09 3.67 -53.43 -0.20 -18.29 16 5 C -0.17 -5.13 8.02 -15.06 -0.12 -5.25 16 6 H 0.06 1.93 7.83 -52.48 -0.41 1.52 16 7 C -0.03 -0.90 5.50 -17.43 -0.10 -0.99 16 8 N -0.95 -30.35 13.06 55.49 0.72 -29.62 16 9 Si 0.90 24.74 29.55 -169.99 -5.02 19.71 16 10 H -0.30 -8.09 7.11 56.52 0.40 -7.69 16 11 H -0.30 -8.29 7.11 56.52 0.40 -7.89 16 12 H -0.28 -7.82 7.11 56.52 0.40 -7.42 16 13 C 0.15 2.51 2.66 -67.60 -0.18 2.33 16 14 H 0.06 0.94 7.93 -51.93 -0.41 0.53 16 15 C -0.13 -2.09 4.97 -26.61 -0.13 -2.23 16 16 C -0.12 -1.38 5.88 -26.69 -0.16 -1.54 16 17 C -0.13 -1.54 6.08 -26.61 -0.16 -1.70 16 18 C 0.11 1.30 5.55 -3.71 -0.02 1.28 16 19 N -0.61 -10.10 2.97 -166.89 -0.50 -10.60 16 20 C 0.56 11.27 7.36 -13.02 -0.10 11.17 16 21 O -0.42 -10.41 9.06 5.15 0.05 -10.37 16 22 C -0.29 -5.04 6.12 -36.82 -0.23 -5.27 16 23 S 0.24 2.70 18.54 -107.50 -1.99 0.70 16 24 C -0.25 -2.60 10.91 29.15 0.32 -2.29 16 25 C -0.17 -2.32 10.15 -41.35 -0.42 -2.74 16 26 C 0.16 2.77 7.46 -40.25 -0.30 2.47 16 27 F -0.10 -2.14 16.55 2.25 0.04 -2.11 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.03 0.50 7.77 -51.93 -0.40 0.10 16 30 H 0.05 1.04 8.01 -51.93 -0.42 0.62 16 31 H 0.38 10.32 5.51 -40.82 -0.22 10.10 16 32 H 0.25 7.75 8.31 -40.82 -0.34 7.42 16 33 H 0.08 1.61 5.96 -51.93 -0.31 1.30 16 34 H 0.07 1.07 7.63 -51.93 -0.40 0.67 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.89 3.12 -18.46 -0.06 0.83 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16 42 H 0.15 1.67 8.06 -52.49 -0.42 1.24 16 LS Contribution 339.11 15.07 5.11 5.11 Total: -1.00 -35.34 339.11 -8.63 -43.97 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -5.45 Total: 5.69 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -1.39 Total: -4.21 kcal Atomic # 7 Polarization: -58.54 SS G_CDS: 0.03 Total: -58.51 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.05 Total: -10.37 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.04 Total: -2.11 kcal Atomic # 14 Polarization: 24.74 SS G_CDS: -5.02 Total: 19.71 kcal Atomic # 16 Polarization: 2.70 SS G_CDS: -1.99 Total: 0.70 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -35.34 -8.63 -43.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752146779.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.562 kcal (2) G-P(sol) polarization free energy of solvation -35.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds