Wall clock time and date at job start Tue Mar 31 2020 16:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46927 * 2 1 4 4 N 1.46491 * 109.47550 * 119.99957 * 2 1 3 5 5 C 1.36937 * 120.00460 * 275.00438 * 4 2 1 6 6 H 1.08008 * 119.99671 * 0.02562 * 5 4 2 7 7 C 1.38808 * 120.00207 * 179.71967 * 5 4 2 8 8 N 1.31621 * 120.00232 * 0.27850 * 7 5 4 9 9 Si 1.86808 * 119.99794 * 180.27573 * 7 5 4 10 10 H 1.48504 * 109.46829 * 90.00355 * 9 7 5 11 11 H 1.48501 * 109.47149 * 210.00111 * 9 7 5 12 12 H 1.48492 * 109.47017 * 330.00164 * 9 7 5 13 13 C 1.53005 * 109.47513 * 240.00334 * 2 1 3 14 14 H 1.09003 * 109.58030 * 51.76749 * 13 2 1 15 15 C 1.53191 * 109.58361 * 291.48523 * 13 2 1 16 16 C 1.53037 * 109.30988 * 185.57483 * 15 13 2 17 17 C 1.53041 * 109.53963 * 61.36424 * 16 15 13 18 18 C 1.53192 * 109.31368 * 298.63424 * 17 16 15 19 19 N 1.46921 * 109.58843 * 172.18951 * 13 2 1 20 20 C 1.34778 * 120.63313 * 353.40208 * 19 13 2 21 21 O 1.21741 * 119.99661 * 6.75104 * 20 19 13 22 22 C 1.46289 * 120.00139 * 186.75175 * 20 19 13 23 23 S 1.75824 * 125.46492 * 16.17009 * 22 20 19 24 24 C 1.70601 * 91.60895 * 179.97438 * 23 22 20 25 25 C 1.33732 * 111.03632 * 0.02562 * 24 23 22 26 26 C 1.36924 * 125.46510 * 195.86179 * 22 20 19 27 27 F 1.35101 * 123.40560 * 0.02562 * 26 22 20 28 28 H 1.08994 * 109.47715 * 324.91373 * 1 2 3 29 29 H 1.09004 * 109.47007 * 84.92025 * 1 2 3 30 30 H 1.09001 * 109.46571 * 204.91361 * 1 2 3 31 31 H 0.97002 * 120.00448 * 94.99885 * 4 2 1 32 32 H 0.96998 * 119.99927 * 179.97438 * 8 7 5 33 33 H 1.08999 * 109.49602 * 305.52547 * 15 13 2 34 34 H 1.09000 * 109.49792 * 65.58768 * 15 13 2 35 35 H 1.09003 * 109.46300 * 181.38518 * 16 15 13 36 36 H 1.09001 * 109.46152 * 301.34593 * 16 15 13 37 37 H 1.09002 * 109.49856 * 58.58167 * 17 16 15 38 38 H 1.08997 * 109.49984 * 178.65042 * 17 16 15 39 39 H 1.08996 * 109.58927 * 174.42066 * 18 17 16 40 40 H 1.09001 * 109.58266 * 294.84876 * 18 17 16 41 41 H 1.07994 * 124.47943 * 179.97438 * 24 23 22 42 42 H 1.08002 * 122.45082 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 1.1961 5 6 2.1492 -0.0075 2.3757 6 1 1.8918 1.0403 2.4244 7 6 2.6064 -0.6633 3.5104 8 7 2.9196 -1.9403 3.4513 9 14 2.7775 0.2667 5.1215 10 1 1.5061 0.1748 5.8835 11 1 3.8782 -0.3276 5.9217 12 1 3.0839 1.6922 4.8400 13 6 2.0401 -0.7212 -1.2493 14 1 1.5627 -0.3006 -2.1344 15 6 1.7129 -2.2144 -1.1497 16 6 2.3458 -2.9511 -2.3324 17 6 3.8664 -2.7855 -2.2842 18 6 4.2180 -1.2987 -2.3966 19 7 3.4972 -0.5619 -1.3496 20 6 4.1601 0.2447 -0.4972 21 8 3.5734 0.7529 0.4406 22 6 5.5846 0.5095 -0.6991 23 16 6.4793 0.2024 -2.1811 24 6 7.9242 0.7860 -1.4867 25 6 7.7251 1.1798 -0.2243 26 6 6.4337 1.0419 0.2339 27 9 6.0449 1.3924 1.4794 28 1 -0.3634 0.8408 0.5907 29 1 -0.3633 0.0910 -1.0237 30 1 -0.3632 -0.9321 0.4329 31 1 2.2491 -1.6317 1.1526 32 1 3.2394 -2.3985 4.2442 33 1 2.1122 -2.6129 -0.2171 34 1 0.6318 -2.3522 -1.1710 35 1 2.0939 -4.0102 -2.2775 36 1 1.9647 -2.5354 -3.2652 37 1 4.2455 -3.1786 -1.3408 38 1 4.3183 -3.3303 -3.1131 39 1 5.2917 -1.1661 -2.2635 40 1 3.9203 -0.9260 -3.3766 41 1 8.8740 0.8306 -1.9985 42 1 8.5181 1.5809 0.3895 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752146779.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:45:41 Heat of formation + Delta-G solvation = -5.739274 kcal Electronic energy + Delta-G solvation = -27616.100620 eV Core-core repulsion = 23831.886578 eV Total energy + Delta-G solvation = -3784.214042 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.121 amu Computer time = 6.24 seconds Orbital eigenvalues (eV) -49.88033 -41.52532 -38.71833 -37.78871 -36.91121 -34.19580 -33.72449 -31.40047 -30.60024 -29.74755 -26.75307 -25.79810 -25.28893 -24.66448 -22.60206 -21.88477 -20.65329 -20.31109 -19.15461 -18.77072 -17.67686 -17.21429 -16.94973 -16.63778 -16.29988 -16.06731 -15.71001 -15.54295 -15.45795 -15.10664 -14.89795 -14.53768 -14.29739 -14.11947 -13.90679 -13.70898 -13.42430 -13.26405 -13.04918 -12.84502 -12.75317 -12.67288 -12.44480 -12.32091 -12.16690 -11.88444 -11.69332 -11.47722 -11.29974 -11.16875 -10.84487 -9.91743 -9.85427 -9.37094 -9.23908 -8.63500 -7.78924 -4.95952 -0.57298 0.35560 0.82655 1.25013 1.36708 1.40053 1.48076 2.00750 2.39872 2.64001 3.39069 3.53236 3.55921 3.85199 3.92115 4.02240 4.07076 4.12130 4.26020 4.31437 4.38924 4.44319 4.59241 4.62541 4.75040 4.79536 4.88610 4.94269 4.96193 5.00819 5.08816 5.16299 5.26547 5.29050 5.31782 5.47723 5.53950 5.59879 5.66560 5.91477 6.45370 6.56108 7.45755 7.54833 8.31642 8.54659 9.46370 Molecular weight = 326.12amu Principal moments of inertia in cm(-1) A = 0.010441 B = 0.007106 C = 0.004824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2681.057183 B = 3939.458673 C = 5802.483681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.159 3.841 3 H 0.055 0.945 4 N -0.703 5.703 5 C -0.151 4.151 6 H 0.048 0.952 7 C -0.095 4.095 8 N -0.980 5.980 9 Si 0.948 3.052 10 H -0.288 1.288 11 H -0.301 1.301 12 H -0.288 1.288 13 C 0.152 3.848 14 H 0.104 0.896 15 C -0.130 4.130 16 C -0.109 4.109 17 C -0.130 4.130 18 C 0.098 3.902 19 N -0.607 5.607 20 C 0.550 3.450 21 O -0.494 6.494 22 C -0.349 4.349 23 S 0.355 5.645 24 C -0.222 4.222 25 C -0.196 4.196 26 C 0.116 3.884 27 F -0.140 7.140 28 H 0.030 0.970 29 H 0.077 0.923 30 H 0.039 0.961 31 H 0.369 0.631 32 H 0.239 0.761 33 H 0.033 0.967 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.036 0.964 38 H 0.114 0.886 39 H 0.079 0.921 40 H 0.112 0.888 41 H 0.218 0.782 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.287 0.383 -24.110 25.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.051 3.949 3 H 0.073 0.927 4 N -0.343 5.343 5 C -0.285 4.285 6 H 0.066 0.934 7 C -0.285 4.285 8 N -0.636 5.636 9 Si 0.782 3.218 10 H -0.215 1.215 11 H -0.229 1.229 12 H -0.215 1.215 13 C 0.049 3.951 14 H 0.122 0.878 15 C -0.168 4.168 16 C -0.146 4.146 17 C -0.168 4.168 18 C -0.026 4.026 19 N -0.343 5.343 20 C 0.337 3.663 21 O -0.369 6.369 22 C -0.469 4.469 23 S 0.622 5.378 24 C -0.359 4.359 25 C -0.227 4.227 26 C 0.081 3.919 27 F -0.118 7.118 28 H 0.049 0.951 29 H 0.096 0.904 30 H 0.058 0.942 31 H 0.203 0.797 32 H 0.048 0.952 33 H 0.051 0.949 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.111 0.889 37 H 0.055 0.945 38 H 0.132 0.868 39 H 0.096 0.904 40 H 0.130 0.870 41 H 0.235 0.765 42 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 7.623 0.306 -24.853 25.998 hybrid contribution 0.658 0.862 3.906 4.054 sum 8.282 1.168 -20.947 22.555 Atomic orbital electron populations 1.22438 0.97984 1.00316 1.00986 1.20863 0.91508 0.96748 0.85819 0.92726 1.42504 1.77145 1.09061 1.05632 1.19169 1.29347 0.92274 0.87681 0.93400 1.25112 1.06004 0.96969 1.00366 1.69771 1.56204 1.09631 1.28012 0.85430 0.76750 0.77630 0.82036 1.21547 1.22869 1.21454 1.21663 0.78760 0.96396 0.98248 0.87824 1.21925 1.01465 0.94486 0.98973 1.21494 0.94477 1.00725 0.97911 1.21911 0.97335 0.94829 1.02758 1.22386 0.95427 0.92978 0.91780 1.47804 1.07806 1.45424 1.33233 1.17343 0.85093 0.81308 0.82558 1.91146 1.66325 1.51007 1.28427 1.25108 0.99820 1.18609 1.03410 1.82525 0.94339 1.53585 1.07311 1.26175 1.08836 1.02004 0.98843 1.19893 0.94677 1.09219 0.98870 1.17746 0.94125 0.99686 0.80339 1.91518 1.91833 1.89321 1.39158 0.95074 0.90427 0.94150 0.79678 0.95237 0.94868 0.90153 0.90899 0.88903 0.94481 0.86806 0.90419 0.87006 0.76473 0.81869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.87 8.99 71.98 0.65 -5.22 16 2 C 0.16 6.86 1.88 44.99 0.08 6.94 16 3 H 0.06 2.70 5.81 -11.56 -0.07 2.63 16 4 N -0.70 -38.41 3.67 -322.95 -1.19 -39.60 16 5 C -0.15 -9.51 8.02 84.03 0.67 -8.84 16 6 H 0.05 3.10 7.83 -2.91 -0.02 3.08 16 7 C -0.10 -6.21 5.50 84.86 0.47 -5.74 16 8 N -0.98 -66.27 13.06 21.65 0.28 -65.99 16 9 Si 0.95 53.81 29.55 68.60 2.03 55.84 16 10 H -0.29 -15.67 7.11 99.48 0.71 -14.96 16 11 H -0.30 -17.15 7.11 99.48 0.71 -16.44 16 12 H -0.29 -16.26 7.11 99.48 0.71 -15.55 16 13 C 0.15 4.90 2.66 44.98 0.12 5.02 16 14 H 0.10 2.58 7.93 -2.39 -0.02 2.56 16 15 C -0.13 -3.89 4.97 30.67 0.15 -3.73 16 16 C -0.11 -2.17 5.88 30.62 0.18 -1.99 16 17 C -0.13 -2.57 6.08 30.67 0.19 -2.38 16 18 C 0.10 2.02 5.55 86.36 0.48 2.50 16 19 N -0.61 -19.60 2.97 -800.11 -2.38 -21.97 16 20 C 0.55 22.87 7.36 86.34 0.64 23.51 16 21 O -0.49 -26.18 9.06 -4.48 -0.04 -26.22 16 22 C -0.35 -12.05 6.12 24.06 0.15 -11.90 16 23 S 0.36 6.43 18.54 -56.49 -1.05 5.39 16 24 C -0.22 -3.74 10.91 66.80 0.73 -3.01 16 25 C -0.20 -5.02 10.15 21.12 0.21 -4.81 16 26 C 0.12 4.33 7.46 21.84 0.16 4.49 16 27 F -0.14 -6.76 16.55 44.97 0.74 -6.02 16 28 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.08 2.18 7.77 -2.38 -0.02 2.16 16 30 H 0.04 1.59 8.01 -2.39 -0.02 1.57 16 31 H 0.37 21.46 5.51 -92.71 -0.51 20.95 16 32 H 0.24 15.85 8.31 -92.71 -0.77 15.08 16 33 H 0.03 1.33 5.96 -2.39 -0.01 1.32 16 34 H 0.08 2.23 7.63 -2.39 -0.02 2.21 16 35 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.08 1.53 3.12 -23.67 -0.07 1.46 16 40 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.22 1.59 8.06 -2.91 -0.02 1.56 16 42 H 0.16 3.53 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -88.71 339.11 3.70 -85.01 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: 0.42 Total: 18.73 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: 4.88 Total: -5.16 kcal Atomic # 7 Polarization: -124.28 SS G_CDS: -3.28 Total: -127.56 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.04 Total: -26.22 kcal Atomic # 9 Polarization: -6.76 SS G_CDS: 0.74 Total: -6.02 kcal Atomic # 14 Polarization: 53.81 SS G_CDS: 2.03 Total: 55.84 kcal Atomic # 16 Polarization: 6.43 SS G_CDS: -1.05 Total: 5.39 kcal Total: -88.71 3.70 -85.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752146779.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.269 kcal (2) G-P(sol) polarization free energy of solvation -88.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.24 seconds