Wall clock time and date at job start Tue Mar 31 2020 16:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47101 * 2 1 4 4 N 1.46500 * 109.46882 * 119.99804 * 2 1 3 5 5 C 1.36927 * 120.00187 * 289.10328 * 4 2 1 6 6 H 1.07997 * 120.00275 * 359.97438 * 5 4 2 7 7 C 1.38822 * 120.00224 * 179.97438 * 5 4 2 8 8 N 1.31610 * 119.99599 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99889 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47364 * 60.00144 * 9 7 5 11 11 H 1.48502 * 109.46915 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47236 * 299.99780 * 9 7 5 13 13 C 1.53007 * 109.47114 * 239.99878 * 2 1 3 14 14 H 1.09004 * 109.69717 * 283.00722 * 13 2 1 15 15 C 1.53620 * 109.66530 * 43.59477 * 13 2 1 16 16 C 1.53036 * 109.24178 * 174.54635 * 15 13 2 17 17 C 1.53038 * 109.54142 * 298.51718 * 16 15 13 18 18 C 1.53191 * 109.31338 * 61.36220 * 17 16 15 19 19 N 1.46921 * 109.58471 * 162.65372 * 13 2 1 20 20 C 1.34774 * 120.63419 * 6.62109 * 19 13 2 21 21 O 1.21744 * 119.99869 * 5.34749 * 20 19 13 22 22 C 1.46292 * 120.00158 * 185.34503 * 20 19 13 23 23 S 1.75822 * 125.46434 * 316.97940 * 22 20 19 24 24 C 1.70600 * 91.60694 * 180.02562 * 23 22 20 25 25 C 1.33740 * 111.03995 * 0.02562 * 24 23 22 26 26 C 1.36933 * 125.46384 * 137.29884 * 22 20 19 27 27 F 1.35101 * 123.40292 * 359.94244 * 26 22 20 28 28 H 1.09000 * 109.47042 * 300.00486 * 1 2 3 29 29 H 1.09002 * 109.46616 * 60.00340 * 1 2 3 30 30 H 1.08998 * 109.47101 * 179.97438 * 1 2 3 31 31 H 0.97008 * 119.99654 * 109.09803 * 4 2 1 32 32 H 0.96998 * 119.99865 * 180.02562 * 8 7 5 33 33 H 1.09003 * 109.62784 * 54.56212 * 15 13 2 34 34 H 1.08997 * 109.45978 * 294.43767 * 15 13 2 35 35 H 1.09001 * 109.46233 * 178.49437 * 16 15 13 36 36 H 1.09001 * 109.45925 * 58.53606 * 16 15 13 37 37 H 1.09006 * 109.49557 * 301.40888 * 17 16 15 38 38 H 1.09002 * 109.50108 * 181.31824 * 17 16 15 39 39 H 1.08998 * 109.58764 * 185.57855 * 18 17 16 40 40 H 1.08998 * 109.70234 * 65.22652 * 18 17 16 41 41 H 1.07997 * 124.48325 * 179.97438 * 24 23 22 42 42 H 1.07994 * 122.45515 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.8806 -0.1076 2.4275 6 1 1.4124 0.8615 2.5168 7 6 2.3428 -0.7622 3.5611 8 7 2.9129 -1.9434 3.4523 9 14 2.1543 0.0329 5.2409 10 1 0.7142 0.2622 5.5212 11 1 2.7247 -0.8626 6.2791 12 1 2.8747 1.3313 5.2576 13 6 2.0400 -0.7213 -1.2493 14 1 1.9447 -1.7990 -1.1160 15 6 1.2246 -0.2758 -2.4726 16 6 1.8282 -0.8967 -3.7344 17 6 3.2666 -0.4045 -3.9094 18 6 4.1036 -0.8468 -2.7050 19 7 3.4499 -0.3759 -1.4763 20 6 4.1322 0.3545 -0.5722 21 8 3.6120 0.6519 0.4875 22 6 5.4980 0.7898 -0.8641 23 16 6.7499 -0.2025 -1.5986 24 6 7.8740 1.0789 -1.5283 25 6 7.3245 2.1704 -0.9849 26 6 6.0083 2.0335 -0.6036 27 9 5.2916 3.0271 -0.0339 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 2.4391 -1.5609 1.1159 32 1 3.2355 -2.4010 4.2443 33 1 1.2504 0.8109 -2.5538 34 1 0.1924 -0.6079 -2.3615 35 1 1.2363 -0.6045 -4.6018 36 1 1.8248 -1.9828 -3.6419 37 1 3.2731 0.6834 -3.9772 38 1 3.6880 -0.8287 -4.8208 39 1 5.1022 -0.4158 -2.7759 40 1 4.1755 -1.9342 -2.6870 41 1 8.8947 1.0167 -1.8758 42 1 7.8738 3.0906 -0.8513 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752146780.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:45:49 Heat of formation + Delta-G solvation = -12.743364 kcal Electronic energy + Delta-G solvation = -27216.094174 eV Core-core repulsion = 23431.576412 eV Total energy + Delta-G solvation = -3784.517762 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.121 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.97578 -41.53495 -38.71647 -37.89585 -36.92840 -34.31412 -33.71446 -31.57595 -30.76046 -29.36709 -26.87968 -26.03618 -25.31467 -24.30016 -22.61787 -21.52997 -21.10784 -20.40835 -19.37574 -18.61368 -17.80697 -17.25938 -16.83324 -16.80602 -16.52885 -15.92480 -15.62198 -15.53600 -15.42290 -14.99776 -14.95447 -14.66938 -14.37983 -14.23928 -13.86441 -13.72312 -13.52700 -13.36449 -13.00261 -12.83385 -12.80234 -12.62282 -12.47941 -12.26212 -12.12297 -11.87494 -11.69151 -11.59773 -11.41721 -11.23899 -10.83782 -10.21955 -9.75724 -9.45188 -9.32950 -8.67294 -7.80505 -4.98545 -0.54282 0.24911 0.79716 1.23734 1.39189 1.44351 1.49118 1.98859 2.19861 2.62561 3.33296 3.50659 3.52853 3.82449 3.87821 3.96715 4.03104 4.10567 4.29581 4.31899 4.35438 4.41503 4.58705 4.67081 4.71884 4.74732 4.84198 4.89421 4.93338 5.03671 5.07167 5.13711 5.17481 5.24689 5.27378 5.41849 5.46189 5.52962 5.58917 5.87573 6.41738 6.51046 7.39541 7.48584 8.26804 8.49946 9.44584 Molecular weight = 326.12amu Principal moments of inertia in cm(-1) A = 0.010548 B = 0.006095 C = 0.004461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2653.990910 B = 4593.145445 C = 6274.493640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.173 3.827 3 H 0.031 0.969 4 N -0.699 5.699 5 C -0.177 4.177 6 H 0.051 0.949 7 C -0.090 4.090 8 N -0.977 5.977 9 Si 0.957 3.043 10 H -0.279 1.279 11 H -0.294 1.294 12 H -0.296 1.296 13 C 0.152 3.848 14 H 0.064 0.936 15 C -0.121 4.121 16 C -0.115 4.115 17 C -0.125 4.125 18 C 0.088 3.912 19 N -0.604 5.604 20 C 0.543 3.457 21 O -0.492 6.492 22 C -0.336 4.336 23 S 0.318 5.682 24 C -0.208 4.208 25 C -0.184 4.184 26 C 0.114 3.886 27 F -0.138 7.138 28 H 0.027 0.973 29 H 0.076 0.924 30 H 0.048 0.952 31 H 0.364 0.636 32 H 0.242 0.758 33 H 0.059 0.941 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.058 0.942 38 H 0.108 0.892 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.222 0.778 42 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.821 2.494 -23.711 25.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.065 3.935 3 H 0.049 0.951 4 N -0.337 5.337 5 C -0.311 4.311 6 H 0.069 0.931 7 C -0.280 4.280 8 N -0.631 5.631 9 Si 0.788 3.212 10 H -0.205 1.205 11 H -0.220 1.220 12 H -0.224 1.224 13 C 0.049 3.951 14 H 0.081 0.919 15 C -0.159 4.159 16 C -0.152 4.152 17 C -0.163 4.163 18 C -0.035 4.035 19 N -0.340 5.340 20 C 0.329 3.671 21 O -0.366 6.366 22 C -0.458 4.458 23 S 0.584 5.416 24 C -0.345 4.345 25 C -0.215 4.215 26 C 0.079 3.921 27 F -0.117 7.117 28 H 0.046 0.954 29 H 0.095 0.905 30 H 0.068 0.932 31 H 0.195 0.805 32 H 0.051 0.949 33 H 0.077 0.923 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.126 0.874 39 H 0.108 0.892 40 H 0.101 0.899 41 H 0.239 0.761 42 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 8.549 1.363 -23.498 25.042 hybrid contribution -0.086 2.008 2.453 3.171 sum 8.463 3.371 -21.045 22.932 Atomic orbital electron populations 1.22414 0.97692 1.01012 1.00517 1.20597 0.91760 0.95644 0.85493 0.95139 1.42256 1.69992 1.19792 1.01648 1.19193 1.27096 0.99133 0.85631 0.93062 1.25229 1.04034 0.98341 1.00441 1.69778 1.49348 1.16134 1.27869 0.85416 0.77558 0.76863 0.81322 1.20526 1.21969 1.22357 1.21539 0.79808 0.98371 0.95368 0.91856 1.22071 0.99591 1.00895 0.93382 1.21542 0.95869 1.00875 0.96924 1.21892 0.95594 1.01398 0.97452 1.22386 0.97255 1.00409 0.83459 1.47885 1.11623 1.53429 1.21055 1.17443 0.84731 0.80692 0.84245 1.91303 1.67604 1.54088 1.23602 1.24945 1.02004 1.00547 1.18259 1.82810 0.95115 1.11765 1.51904 1.25766 1.07346 0.97126 1.04265 1.19922 0.91938 1.03652 1.05984 1.17516 0.91452 0.84673 0.98411 1.91474 1.78310 1.59587 1.82334 0.95384 0.90537 0.93246 0.80509 0.94899 0.92259 0.89232 0.89374 0.90961 0.92276 0.87404 0.89179 0.89882 0.76120 0.80742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.08 8.45 71.98 0.61 -5.47 16 2 C 0.17 7.74 1.89 44.99 0.09 7.83 16 3 H 0.03 1.59 6.02 -2.39 -0.01 1.57 16 4 N -0.70 -39.12 3.44 -322.93 -1.11 -40.23 16 5 C -0.18 -11.14 8.50 84.04 0.71 -10.42 16 6 H 0.05 3.26 7.83 -2.91 -0.02 3.24 16 7 C -0.09 -5.81 5.50 84.87 0.47 -5.35 16 8 N -0.98 -65.33 13.06 21.65 0.28 -65.05 16 9 Si 0.96 52.37 29.55 68.60 2.03 54.39 16 10 H -0.28 -14.53 7.11 99.48 0.71 -13.82 16 11 H -0.29 -15.84 7.11 99.48 0.71 -15.14 16 12 H -0.30 -16.26 7.11 99.48 0.71 -15.55 16 13 C 0.15 5.21 2.69 45.12 0.12 5.33 16 14 H 0.06 2.25 8.04 -2.38 -0.02 2.23 16 15 C -0.12 -2.92 4.26 30.81 0.13 -2.79 16 16 C -0.11 -1.91 5.88 30.62 0.18 -1.73 16 17 C -0.13 -2.00 6.08 30.67 0.19 -1.82 16 18 C 0.09 1.89 5.91 86.36 0.51 2.41 16 19 N -0.60 -20.05 2.97 -799.31 -2.37 -22.42 16 20 C 0.54 22.66 7.21 86.34 0.62 23.28 16 21 O -0.49 -26.65 10.44 -4.49 -0.05 -26.70 16 22 C -0.34 -11.35 5.61 24.06 0.13 -11.21 16 23 S 0.32 6.45 19.64 -56.49 -1.11 5.34 16 24 C -0.21 -3.31 10.91 66.80 0.73 -2.58 16 25 C -0.18 -4.11 10.15 21.12 0.21 -3.90 16 26 C 0.11 3.79 7.47 21.84 0.16 3.96 16 27 F -0.14 -5.58 17.13 44.97 0.77 -4.81 16 28 H 0.03 1.20 7.92 -2.39 -0.02 1.18 16 29 H 0.08 2.34 6.47 -2.39 -0.02 2.33 16 30 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.36 21.84 7.62 -92.70 -0.71 21.13 16 32 H 0.24 15.80 8.31 -92.71 -0.77 15.03 16 33 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.09 1.97 6.75 -2.39 -0.02 1.96 16 35 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 38 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.09 1.75 3.71 -18.73 -0.07 1.68 16 40 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.22 1.42 8.06 -2.91 -0.02 1.40 16 42 H 0.18 2.97 8.06 -2.91 -0.02 2.95 16 Total: -1.00 -86.16 343.85 3.60 -82.57 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: 0.28 Total: 19.38 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: 4.87 Total: -2.47 kcal Atomic # 7 Polarization: -124.50 SS G_CDS: -3.20 Total: -127.70 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.05 Total: -26.70 kcal Atomic # 9 Polarization: -5.58 SS G_CDS: 0.77 Total: -4.81 kcal Atomic # 14 Polarization: 52.37 SS G_CDS: 2.03 Total: 54.39 kcal Atomic # 16 Polarization: 6.45 SS G_CDS: -1.11 Total: 5.34 kcal Total: -86.16 3.60 -82.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752146780.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.823 kcal (2) G-P(sol) polarization free energy of solvation -86.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds