Wall clock time and date at job start Tue Mar 31 2020 16:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 N 1.46504 * 109.47054 * 184.99999 * 4 2 1 6 6 C 1.34777 * 120.00071 * 180.02562 * 5 4 2 7 7 O 1.21281 * 119.99830 * 0.02562 * 6 5 4 8 8 C 1.50692 * 120.00142 * 180.02562 * 6 5 4 9 9 S 1.81002 * 109.47076 * 179.97438 * 8 6 5 10 10 C 1.76202 * 99.99786 * 179.97438 * 9 8 6 11 11 H 1.08004 * 120.00495 * 0.02562 * 10 9 8 12 12 C 1.38800 * 120.00098 * 179.97438 * 10 9 8 13 13 N 1.31633 * 119.99583 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00303 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.46788 * 60.00479 * 14 12 10 16 16 H 1.48498 * 109.47136 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47184 * 300.00594 * 14 12 10 18 18 N 1.46901 * 109.46860 * 120.00150 * 2 1 3 19 19 C 1.46900 * 110.99890 * 274.99873 * 18 2 1 20 20 C 1.50698 * 109.47212 * 179.97438 * 19 18 2 21 21 C 1.38221 * 120.01259 * 105.00255 * 20 19 18 22 22 C 1.38225 * 120.02488 * 179.97438 * 21 20 19 23 23 C 1.38258 * 120.05064 * 0.02562 * 22 21 20 24 24 C 1.38175 * 120.02927 * 359.97438 * 23 22 21 25 25 C 1.38436 * 120.01328 * 284.72023 * 20 19 18 26 26 F 1.35096 * 120.02489 * 0.02562 * 25 20 19 27 27 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 28 28 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 30 30 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 31 31 H 1.09002 * 109.46642 * 65.00413 * 4 2 1 32 32 H 0.97000 * 119.99700 * 0.02562 * 5 4 2 33 33 H 1.09001 * 109.47456 * 300.00106 * 8 6 5 34 34 H 1.09002 * 109.47145 * 60.00200 * 8 6 5 35 35 H 0.97009 * 119.99727 * 179.97438 * 13 12 10 36 36 H 1.00901 * 111.00276 * 151.05158 * 18 2 1 37 37 H 1.09002 * 109.47391 * 300.00224 * 19 18 2 38 38 H 1.09005 * 109.47266 * 59.99895 * 19 18 2 39 39 H 1.08006 * 119.98544 * 359.95515 * 21 20 19 40 40 H 1.08000 * 119.97252 * 179.97438 * 22 21 20 41 41 H 1.08001 * 119.98651 * 179.97438 * 23 22 21 42 42 H 1.08001 * 120.01369 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.1732 -1.4284 -2.1910 7 8 3.5702 -1.8826 -3.1402 8 6 5.6750 -1.5370 -2.1303 9 16 6.2784 -2.3902 -3.6082 10 6 8.0101 -2.3772 -3.2834 11 1 8.3864 -1.9247 -2.3778 12 6 8.8908 -2.9495 -4.1908 13 7 8.4322 -3.5015 -5.2943 14 14 10.7268 -2.9351 -3.8468 15 1 10.9984 -3.6583 -2.5786 16 1 11.4446 -3.6035 -4.9618 17 1 11.1970 -1.5317 -3.7268 18 7 2.0196 -0.6925 1.1994 19 6 2.0824 0.2225 2.3469 20 6 2.5872 -0.5219 3.5561 21 6 3.8821 -0.3258 3.9978 22 6 4.3452 -1.0080 5.1072 23 6 3.5141 -1.8876 5.7758 24 6 2.2192 -2.0853 5.3361 25 6 1.7523 -1.3979 4.2283 26 9 0.4848 -1.5865 3.8005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.6055 -1.7198 -1.2951 31 1 1.7517 -0.1583 -2.1369 32 1 3.9824 -0.4628 -0.4315 33 1 6.1100 -0.5386 -2.0837 34 1 5.9630 -2.1006 -1.2429 35 1 9.0478 -3.9011 -5.9288 36 1 2.9173 -1.1205 1.0288 37 1 2.7588 1.0462 2.1183 38 1 1.0870 0.6163 2.5525 39 1 4.5325 0.3606 3.4758 40 1 5.3573 -0.8545 5.4514 41 1 3.8772 -2.4205 6.6423 42 1 1.5704 -2.7728 5.8584 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752863319.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:40 Heat of formation + Delta-G solvation = -60.825901 kcal Electronic energy + Delta-G solvation = -24259.600297 eV Core-core repulsion = 20472.997520 eV Total energy + Delta-G solvation = -3786.602777 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.121 amu Computer time = 10.48 seconds Orbital eigenvalues (eV) -49.04267 -39.68186 -39.23290 -37.45587 -34.26838 -32.59963 -32.43404 -30.91125 -30.04825 -29.30013 -26.25164 -25.51748 -25.02471 -23.10481 -21.74013 -20.89845 -20.42930 -18.05192 -17.79656 -16.91856 -16.59967 -16.29210 -16.24148 -15.86715 -15.68325 -15.09457 -14.81320 -14.75621 -14.54633 -14.12718 -13.80514 -13.51968 -13.29553 -13.15821 -12.89904 -12.80406 -12.65046 -12.54894 -12.22409 -12.08318 -11.80660 -11.64668 -11.29920 -11.10704 -11.05202 -11.04661 -10.77433 -9.83683 -9.44010 -9.38941 -9.07461 -8.98198 -8.94082 -8.79864 -8.25178 -6.51020 -6.22308 -3.93138 0.78296 0.85640 2.99373 3.06850 3.18270 3.22618 3.26649 3.29771 3.66117 3.87551 3.98115 4.19556 4.28370 4.37098 4.50938 4.60954 4.78938 4.89176 4.98199 5.04794 5.10386 5.12688 5.13066 5.20178 5.48802 5.50290 5.56260 5.59755 5.67315 5.70894 5.80482 5.85194 5.87593 5.94199 6.03305 6.05511 6.10773 6.52154 6.53491 6.64912 7.00641 7.57871 7.61024 8.33946 8.57111 9.22718 10.85058 Molecular weight = 326.12amu Principal moments of inertia in cm(-1) A = 0.012622 B = 0.002606 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.762996 B =10743.616409 C =12495.878405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.075 3.925 3 H 0.052 0.948 4 C 0.118 3.882 5 N -0.742 5.742 6 C 0.533 3.467 7 O -0.514 6.514 8 C -0.154 4.154 9 S -0.058 6.058 10 C -0.537 4.537 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 N -0.680 5.680 19 C 0.100 3.900 20 C -0.125 4.125 21 C -0.085 4.085 22 C -0.132 4.132 23 C -0.089 4.089 24 C -0.160 4.160 25 C 0.125 3.875 26 F -0.130 7.130 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.392 0.608 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.269 0.731 36 H 0.346 0.654 37 H 0.045 0.955 38 H 0.085 0.915 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.131 0.869 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.132 9.168 22.939 27.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.035 4.035 3 H 0.069 0.931 4 C -0.006 4.006 5 N -0.398 5.398 6 C 0.319 3.681 7 O -0.387 6.387 8 C -0.305 4.305 9 S 0.168 5.832 10 C -0.685 4.685 11 H 0.090 0.910 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.200 1.200 18 N -0.314 5.314 19 C -0.028 4.028 20 C -0.126 4.126 21 C -0.104 4.104 22 C -0.151 4.151 23 C -0.108 4.108 24 C -0.179 4.179 25 C 0.105 3.895 26 F -0.109 7.109 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.226 0.774 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.079 0.921 36 H 0.166 0.834 37 H 0.063 0.937 38 H 0.103 0.897 39 H 0.149 0.851 40 H 0.148 0.852 41 H 0.149 0.851 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -14.786 8.056 21.285 27.140 hybrid contribution 2.703 1.156 1.478 3.290 sum -12.083 9.212 22.763 27.368 Atomic orbital electron populations 1.21726 0.93245 1.03064 1.01544 1.21793 0.96979 0.96004 0.88674 0.93050 1.21517 0.80363 1.01739 0.96971 1.46046 1.07176 1.62190 1.24405 1.20292 0.89482 0.76697 0.81630 1.90712 1.69869 1.45720 1.32419 1.23534 0.93521 1.05617 1.07787 1.85417 1.04555 1.73114 1.20102 1.22825 0.91547 1.44442 1.09687 0.91000 1.24994 0.99593 0.94521 0.94456 1.70012 1.35536 1.35356 1.09360 0.86223 0.82761 0.78453 0.78055 1.19922 1.20794 1.19955 1.60519 1.34137 1.32889 1.03897 1.20841 1.01278 0.92816 0.87907 1.19859 0.94559 0.99845 0.98347 1.21023 0.93987 0.99012 0.96345 1.21208 1.00344 0.97347 0.96153 1.21047 0.92782 0.97384 0.99539 1.21200 0.97608 1.01834 0.97261 1.17503 0.79941 0.97483 0.94534 1.91520 1.36304 1.93761 1.89275 0.92076 0.91428 0.92416 0.90540 0.90784 0.77418 0.89310 0.89223 0.92106 0.83375 0.93664 0.89703 0.85110 0.85244 0.85079 0.84786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.41 37.16 0.35 -0.78 16 2 C 0.08 0.67 2.81 -67.71 -0.19 0.48 16 3 H 0.05 0.42 7.80 -51.93 -0.40 0.01 16 4 C 0.12 1.38 5.31 -4.04 -0.02 1.36 16 5 N -0.74 -9.69 4.99 -60.30 -0.30 -9.99 16 6 C 0.53 9.88 7.85 -10.99 -0.09 9.79 16 7 O -0.51 -11.70 15.86 5.56 0.09 -11.61 16 8 C -0.15 -3.07 6.16 36.00 0.22 -2.85 16 9 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 10 C -0.54 -15.25 9.50 30.94 0.29 -14.95 16 11 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 12 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 13 N -0.87 -26.16 13.22 55.49 0.73 -25.43 16 14 Si 0.92 21.30 29.55 -169.99 -5.02 16.28 16 15 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 17 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 18 N -0.68 -6.27 6.29 -107.99 -0.68 -6.95 16 19 C 0.10 0.80 5.30 -4.98 -0.03 0.77 16 20 C -0.12 -1.07 5.40 -104.56 -0.56 -1.64 16 21 C -0.09 -0.62 9.67 -39.59 -0.38 -1.01 16 22 C -0.13 -0.90 10.04 -39.58 -0.40 -1.30 16 23 C -0.09 -0.61 10.04 -39.60 -0.40 -1.01 16 24 C -0.16 -1.29 10.03 -39.51 -0.40 -1.69 16 25 C 0.13 1.20 7.25 -39.42 -0.29 0.92 16 26 F -0.13 -1.44 16.75 2.25 0.04 -1.40 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.45 7.45 -51.93 -0.39 0.06 16 30 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.39 3.99 7.37 -40.82 -0.30 3.69 16 33 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 34 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 35 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.35 3.33 6.70 -39.29 -0.26 3.07 16 37 H 0.05 0.30 7.87 -51.93 -0.41 -0.11 16 38 H 0.08 0.69 7.37 -51.93 -0.38 0.31 16 39 H 0.13 0.73 8.00 -52.48 -0.42 0.31 16 40 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 41 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 42 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 374.52 15.07 5.64 5.64 Total: -1.00 -34.56 374.52 -9.61 -44.16 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -5.92 Total: 3.00 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: -1.98 Total: -9.90 kcal Atomic # 7 Polarization: -42.13 SS G_CDS: -0.25 Total: -42.38 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.09 Total: -11.61 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.56 -9.61 -44.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752863319.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.663 kcal (2) G-P(sol) polarization free energy of solvation -34.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.48 seconds